GOID TERM ONTOLOGY pValue Genes GO:0009636 response to toxic substance BP 0.00909280471723878 AT5G60730//AHK2//ATMTP3 GO:0071368 cellular response to cytokinin stimulus BP 0.0131214143218309 ARR2//ARR6//AHP3//AHK2//SRD2//ARR4 GO:0034470 ncRNA processing BP 0.0227398749554302 ATIPT9//AT5G16130//AT5G15550//AT5G58330//AT3G63510//AT3G59040//ATNOA1//AT4G26600//RH39//AT3G07750//RHON1//emb2184//AtRH36//DRB1//SE//EDA13 GO:0034660 ncRNA metabolic process BP 0.0231303735760668 ATIPT9//AT5G16130//AT5G15550//AT5G58330//AT3G63510//AT3G59040//ATNOA1//AT4G39280//AT4G26600//RH39//AT3G07750//RHON1//emb2184//AtRH36//SRD2//DRB1//ATNAF1//SE//EDA13 GO:0009735 response to cytokinin BP 0.0248555756813554 ARR2//ARR6//AHP3//AHK2//SRD2//ARR4//DRB1 GO:0072527 pyrimidine-containing compound metabolic... BP 0.0261495603202687 ATEIF2-A2//AT5G02870//PYRR//AT4G29630//AT4G28450//AT3G18510//RPL18//ATYLMG1-1//NOP56//AT1G13030//AT2G42910//AT2G18220 GO:0016143 S-glycoside metabolic process BP 0.0261780301411918 AT5G58330//AtPLR1//AT5G44020//AT3G56010//AT3G02250//AT2G25450 GO:0019757 glycosinolate metabolic process BP 0.0261780301411918 AT5G58330//AtPLR1//AT5G44020//AT3G56010//AT3G02250//AT2G25450 GO:0019760 glucosinolate metabolic process BP 0.0261780301411918 AT5G58330//AtPLR1//AT5G44020//AT3G56010//AT3G02250//AT2G25450 GO:0006073 cellular glucan metabolic process BP 0.0281635632307211 XTH6//AT5G58330//XTH25//AtPLR1//AtENODL17//EXGT-A4//PPD5//AT3G56010//ATXTH18//XTH16//sks5//XET//ATATP-PRT2//EXGT-A1 GO:0044042 glucan metabolic process BP 0.0281635632307211 XTH6//AT5G58330//XTH25//AtPLR1//AtENODL17//EXGT-A4//PPD5//AT3G56010//ATXTH18//XTH16//sks5//XET//ATATP-PRT2//EXGT-A1 GO:0072528 pyrimidine-containing compound biosynthe... BP 0.0350172176342734 ATEIF2-A2//AT5G02870//PYRR//AT4G28450//AT3G18510//RPL18//ATYLMG1-1//NOP56//AT1G13030//AT2G42910//AT2G18220 GO:0007005 mitochondrion organization BP 0.0359016623826748 AT2G39725//ATRH1//AT5G15550//LON1//TOM20-1//AT3G07750//AT1G02370//AT1G14060//AT2G40700 GO:0006626 protein targeting to mitochondrion BP 0.0386877598995016 AT2G39725//ATRH1//AT5G15550//TOM20-1//AT3G07750//AT1G02370//AT1G14060//AT2G40700 GO:0070585 protein localization to mitochondrion BP 0.0386877598995016 AT2G39725//ATRH1//AT5G15550//TOM20-1//AT3G07750//AT1G02370//AT1G14060//AT2G40700 GO:0072655 establishment of protein localization to... BP 0.0386877598995016 AT2G39725//ATRH1//AT5G15550//TOM20-1//AT3G07750//AT1G02370//AT1G14060//AT2G40700 GO:0006606 protein import into nucleus BP 0.0405667732120006 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0034504 protein localization to nucleus BP 0.0405667732120006 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0044744 protein targeting to nucleus BP 0.0405667732120006 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:1902593 single-organism nuclear import BP 0.0405667732120006 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0031537 regulation of anthocyanin metabolic proc... BP 0.0406120958457265 ARR2//AHP3//AHK2 GO:0009736 cytokinin-activated signaling pathway BP 0.042182017904396 ARR2//ARR6//AHP3//AHK2//ARR4 GO:0016144 S-glycoside biosynthetic process BP 0.042182017904396 AT5G58330//AtPLR1//AT5G44020//AT3G02250//AT2G25450 GO:0019758 glycosinolate biosynthetic process BP 0.042182017904396 AT5G58330//AtPLR1//AT5G44020//AT3G02250//AT2G25450 GO:0019761 glucosinolate biosynthetic process BP 0.042182017904396 AT5G58330//AtPLR1//AT5G44020//AT3G02250//AT2G25450 GO:0008202 steroid metabolic process BP 0.0426258114538889 AT1G77330//AGP7//AtENODL17//TTL4//ORP2B//BR6OX2//AT3G24040//ORP3B//sks5//EXGT-A1 GO:0051170 nuclear import BP 0.0426258114538889 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0009657 plastid organization BP 0.0465197444231631 AT5G58330//CAA33//PPD5//AT3G59040//ATNOA1//MRL7//cpHsc70-1//RH39//EMB1303//ATYLMG1-1//RHON1//emb2184//ATECB2//PSRP3/1//RAP2.6//HMR GO:0006333 chromatin assembly or disassembly BP 0.0492518195307873 AT3G09480//AT3G05810//NRP1//AT1G13030//AT2G11910//AT2G34450 GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 0.0515721943909662 ATEIF2-A2//AT5G02870//AT4G28450//AT3G18510//RPL18//ATYLMG1-1//NOP56//AT1G13030//AT2G42910//AT2G18220 GO:1901657 glycosyl compound metabolic process BP 0.0515721943909662 AT5G58330//AtPLR1//AT5G44020//APT5//AT3G56010//PYRR//AT4G29630//AT3G02250//AT2G42910//AT2G25450 GO:0009658 chloroplast organization BP 0.0527709413926872 CAA33//AT3G59040//ATNOA1//MRL7//cpHsc70-1//RH39//EMB1303//ATYLMG1-1//emb2184//ATECB2//RAP2.6 GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 0.053990131419545 ATEIF2-A2//AT5G02870//AT4G28450//AT3G18510//RPL18//ATYLMG1-1//NOP56//AT1G13030//AT2G42910//AT2G18220 GO:0019722 calcium-mediated signaling BP 0.0541104149107182 AtCAM7//ECT1//AtPERK4 GO:0000023 maltose metabolic process BP 0.0586776571144127 AT5G58330//AtPLR1//PPD5//AT3G56010//ATATP-PRT2 GO:0006220 pyrimidine nucleotide metabolic process BP 0.0616894804939158 ATEIF2-A2//AT5G02870//AT4G28450//AT3G18510//RPL18//ATYLMG1-1//NOP56//AT1G13030//AT2G42910//AT2G18220 GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 0.0616894804939158 ATEIF2-A2//AT5G02870//AT4G28450//AT3G18510//RPL18//ATYLMG1-1//NOP56//AT1G13030//AT2G42910//AT2G18220 GO:0033365 protein localization to organelle BP 0.064213614042121 AT2G39725//ATRH1//Toc90//AT5G15550//ATTIP49A//PPD5//ATRH25//AT4G26600//cpHsc70-1//EMB1303//TOM20-1//AT3G07750//AT1G02370//UBC28//AT1G14060//AtRH36//ATSYP51//AT1G75760//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0005975 carbohydrate metabolic process BP 0.0672056195447717 AT5G12350//XTH6//AT5G58330//XTH25//AtPLR1//ATTPPA//GAUT4//AT5G45620//ATTIP49A//AtENODL17//EXGT-A4//PPD5//AtGulLO3//iqd2//BGLU16//GAUT15//ADPG1//AT3G56010//AT3G52500//ATNOA1//AT4G33440//ATXTH18//AT4G10930//ACT11//XTH16//AT3G01620//BE1//NANA//RAP2.2//NDF5//AT1G72230//NRP1//sks5//AT1G74790//ARAC5//AT1G12990//AT1G75760//XET//ATATP-PRT2//ATHEX1//ATCEL5//SDH4//AT2G25450//EXGT-A1 GO:0006364 rRNA processing BP 0.0722562961900752 AT5G16130//AT5G15550//AT5G58330//AT3G59040//ATNOA1//AT4G26600//RH39//AT3G07750//RHON1//emb2184//AtRH36//EDA13 GO:0016072 rRNA metabolic process BP 0.0722562961900752 AT5G16130//AT5G15550//AT5G58330//AT3G59040//ATNOA1//AT4G26600//RH39//AT3G07750//RHON1//emb2184//AtRH36//EDA13 GO:0009112 nucleobase metabolic process BP 0.0743396598532505 APT5//PYRR GO:0044264 cellular polysaccharide metabolic proces... BP 0.074716316487891 AT5G12350//XTH6//AT5G58330//XTH25//AtPLR1//AtENODL17//EXGT-A4//PPD5//AT3G56010//ATXTH18//AT4G10930//XTH16//AT1G72230//sks5//XET//ATATP-PRT2//EXGT-A1 GO:0017038 protein import BP 0.0761740433011478 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//EMB1303//TOM20-1//UBC28//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0005976 polysaccharide metabolic process BP 0.07761848572284 AT5G12350//XTH6//AT5G58330//XTH25//AtPLR1//AtENODL17//EXGT-A4//PPD5//AT3G56010//AT3G52500//ATXTH18//AT4G10930//XTH16//AT1G72230//sks5//ARAC5//XET//ATATP-PRT2//EXGT-A1 GO:0046283 anthocyanin-containing compound metaboli... BP 0.0865509566799025 ARR2//AHP3//AHK2 GO:0006415 translational termination BP 0.0881748070136115 PEL1//ATELF5A-1 GO:0051193 regulation of cofactor metabolic process BP 0.0881748070136115 AHK2//EMB1303 GO:0090056 regulation of chlorophyll metabolic proc... BP 0.0881748070136115 AHK2//EMB1303 GO:1901401 regulation of tetrapyrrole metabolic pro... BP 0.0881748070136115 AHK2//EMB1303 GO:0010029 regulation of seed germination BP 0.088336716623135 ARR2//AHP3//AHK2//BRIZ2 GO:0051604 protein maturation BP 0.088336716623135 AT5G15550//AT5G45620//ATTIP49A//AT2G40700 GO:0044550 secondary metabolite biosynthetic proces... BP 0.0909434204728417 AT5G58330//AtPLR1//AT5G44020//AT3G13650//AT3G02250//LAP6//AT2G25450 GO:0006996 organelle organization BP 0.0919233224935143 AT2G39725//AT5G12350//ATRH1//LYK3//AT5G15550//LON1//AT5G59600//AT5G58330//EXL3//CAA33//AT5G45620//AtRAD21.1//ATTIP49A//PPD5//AT5G05420//BIN5//BGLU16//AT3G59040//ATNOA1//ATNEK6//AT3G42860//ATCSP2//MRL7//PEL1//cpHsc70-1//RH39//EMB1303//ACT11//LDL2//ATRAB7B//TOM20-1//AT3G09480//AT3G05810//ATYLMG1-1//AT3G09360//AT3G02250//AT3G07750//AT1G02370//NRP1//RHON1//emb2184//ATHDA8//ATECB2//PSRP3/1//ATU2AF35A//UBC28//AT1G14060//ATLSD1//ARAC5//AT1G13030//AT2G11910//RAP2.6//ATRAD50//AT2G40700//SE//EDA13//ABIL1//HMR//AT2G34450 GO:1900140 regulation of seedling development BP 0.0953342860975467 ARR2//AHP3//AHK2//BRIZ2 GO:0015824 proline transport BP 0.0956948397562556 AT5G54300//AT5G41800//AT4G08940 GO:0048445 carpel morphogenesis BP 0.0956948397562556 AT4G36600//HEC1//AT5G38760 GO:0072594 establishment of protein localization to... BP 0.0981759859287372 AT2G39725//ATRH1//Toc90//AT5G15550//ATTIP49A//PPD5//ATRH25//AT4G26600//cpHsc70-1//EMB1303//TOM20-1//AT3G07750//AT1G02370//UBC28//AT1G14060//AtRH36//ATSYP51//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0044703 multi-organism reproductive process BP 0.099693360124445 ATRH1//LON1//ERL1//NRPC2//AtRAD21.1//AT5G38760//ATTIP49A//ADPG1//PIP5K4//AT4G26470//KLCR2//AT1G24620//APK3//ATCHX1//AT1G04500//ATRAD50//AT2G40700//EDA13//PIP5K5 GO:0044262 cellular carbohydrate metabolic process BP 0.100163802270499 AT5G12350//XTH6//AT5G58330//XTH25//AtPLR1//ATTPPA//AtENODL17//EXGT-A4//PPD5//AT3G56010//ATNOA1//ATXTH18//AT4G10930//XTH16//AT1G72230//sks5//XET//ATATP-PRT2//AT2G25450//EXGT-A1 GO:0006694 steroid biosynthetic process BP 0.101066102786706 AT1G77330//AGP7//AtENODL17//TTL4//BR6OX2//AT3G24040//sks5//EXGT-A1 GO:0009269 response to desiccation BP 0.102696283479793 XTH6//ATCSP2 GO:0015804 neutral amino acid transport BP 0.10521347765102 AT5G54300//AT5G41800//AT4G08940 GO:0019932 second-messenger-mediated signaling BP 0.10521347765102 AtCAM7//ECT1//AtPERK4 GO:0006839 mitochondrial transport BP 0.105366059347786 AT2G39725//ATRH1//AT5G15550//TOM20-1//AT3G07750//AT1G02370//AT1G14060//AT2G40700 GO:0009827 plant-type cell wall modification BP 0.105366059347786 ERL1//ADPG1//PIP5K4//AT4G26470//ATCHX1//XET//AT1G04500//PIP5K5 GO:0009560 embryo sac egg cell differentiation BP 0.10976605578422 ATRH1//LON1//NRPC2//AtRAD21.1//ATTIP49A//ATRAD50//AT2G40700//EDA13 GO:0071669 plant-type cell wall organization or bio... BP 0.111741897561651 ERL1//XTH25//AtENODL17//AT5G02870//ADPG1//PIP5K4//AT4G26470//AtMYB42//ANAC070//LYM3//sks5//ATCHX1//XET//AT1G04500//PIP5K5 GO:0005984 disaccharide metabolic process BP 0.112702160233582 AT5G58330//AtPLR1//ATTPPA//PPD5//AT3G56010//ATATP-PRT2 GO:0007292 female gamete generation BP 0.114265302190268 ATRH1//LON1//NRPC2//AtRAD21.1//ATTIP49A//ATRAD50//AT2G40700//EDA13 GO:0048588 developmental cell growth BP 0.116248756927365 ERL1//iqd2//ADPG1//PIP5K4//AT4G26470//KLCR2//AT1G24620//ATRAB7B//RALFL22//ARAC5//ATCHX1//AT1G04500//EXGT-A1//PIP5K5 GO:0001522 pseudouridine synthesis BP 0.1178120869637 AT3G06950//ATNAF1 GO:0009893 positive regulation of metabolic process BP 0.122663023082812 AT5G58330//AtPLR1//AT5G44310//AtRAD21.1//PPD5//ATBZIP61//AT3G56010//ATNOA1//AT3G42860//ANAC070//AT3G09360//NDF5//RHON1//AT1G02700//ATELF5A-1//ARR4//RAP2.6//SE//HMR GO:0016126 sterol biosynthetic process BP 0.124110784243733 AGP7//AtENODL17//TTL4//AT3G24040//sks5//EXGT-A1 GO:0000160 phosphorelay signal transduction system BP 0.12689177797603 ARR2//ARR6//AHP3//AHK2//ARR4 GO:0019252 starch biosynthetic process BP 0.12689177797603 AT5G58330//AtPLR1//PPD5//AT3G56010//ATATP-PRT2 GO:0009561 megagametogenesis BP 0.130092965901862 ATRH1//LON1//NRPC2//AtRAD21.1//ATTIP49A//AtRH36//ATRAD50//AT2G40700//EDA13 GO:0009913 epidermal cell differentiation BP 0.133437188112313 BIN5//ATNEK6 GO:0030855 epithelial cell differentiation BP 0.133437188112313 BIN5//ATNEK6 GO:0007276 gamete generation BP 0.139254165245135 ATRH1//LON1//NRPC2//AtRAD21.1//ATTIP49A//APK3//ATRAD50//AT2G40700//EDA13 GO:0009845 seed germination BP 0.139254165245135 ARR2//AHP3//AHK2//AT2S3//AtNG1//ATEM6//ATRAD50//AtPERK4//BRIZ2 GO:0042254 ribosome biogenesis BP 0.143738047061541 AT5G16130//AT5G15550//AT5G58330//AT5G56940//AT3G59040//ATNOA1//AT4G26600//RH39//AT3G07750//AT2G43460//RHON1//emb2184//AtRH36//ATNAF1//EDA13 GO:0006397 mRNA processing BP 0.146585444495053 RNPS1//AT5G01290//AT4G32420//RHON1//DRB1//PRP39//SE GO:0042398 cellular modified amino acid biosyntheti... BP 0.146618278835452 AT4G30000//AT3G13650//RALFL22 GO:0016125 sterol metabolic process BP 0.148531511138415 AGP7//AtENODL17//TTL4//AT3G24040//sks5//EXGT-A1 GO:0009834 plant-type secondary cell wall biogenesi... BP 0.149493086365025 AtMYB42//ANAC070 GO:0009451 RNA modification BP 0.150690906341782 AT5G16130//AT5G15550//MEF1//ATTIP49A//AT5G02870//AT3G63510//AT3G53170//AT3G23620//AT3G06950//AT3G07750//NDF5//ATECB2//NOP56//CRR28//ATNAF1 GO:0009664 plant-type cell wall organization BP 0.152546444716003 ERL1//AtENODL17//AT5G02870//ADPG1//PIP5K4//AT4G26470//LYM3//sks5//ATCHX1//XET//AT1G04500//PIP5K5 GO:0022613 ribonucleoprotein complex biogenesis BP 0.154234794241385 AT5G16130//AT5G15550//AT5G58330//AT5G56940//AT3G59040//ATNOA1//AT4G26600//RH39//AT3G07750//AT2G43460//RHON1//emb2184//AtRH36//ATNAF1//EDA13 GO:0070838 divalent metal ion transport BP 0.154953940641317 AT5G44020//BGLU16//ATMTP3//ATGLR1.4//AT3G02250//AtMT4a GO:0072511 divalent inorganic cation transport BP 0.154953940641317 AT5G44020//BGLU16//ATMTP3//ATGLR1.4//AT3G02250//AtMT4a GO:0006913 nucleocytoplasmic transport BP 0.157094413778656 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0019953 sexual reproduction BP 0.157094413778656 ATRH1//LON1//NRPC2//AtRAD21.1//AT5G38760//ATTIP49A//APK3//ATRAD50//AT2G40700//EDA13 GO:0051169 nuclear transport BP 0.157094413778656 ATRH1//AT5G15550//ATTIP49A//ATRH25//AT4G26600//AtRH36//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0009891 positive regulation of biosynthetic proc... BP 0.157406045597473 AT5G44310//AtRAD21.1//PPD5//ATBZIP61//ATNOA1//AT3G42860//ANAC070//AT3G09360//NDF5//RHON1//AT1G02700//ATELF5A-1//ARR4//RAP2.6//SE//HMR GO:0007267 cell-cell signaling BP 0.159727356451688 RALFL33//RALFL28//RALFL22//ATRAD50 GO:1902580 single-organism cellular localization BP 0.163095036472395 AT2G39725//ATRH1//Toc90//AT5G15550//ATTIP49A//PPD5//ATRH25//AT4G26600//cpHsc70-1//EMB1303//TOM20-1//AT3G07750//AT1G02370//AT1G65080//UBC28//AT1G14060//AtRH36//ATSYP51//ARR4//ATNAF1//AT2G18220//ATRAD50//AT2G40700 GO:0090351 seedling development BP 0.163551024116424 ARR2//AHP3//AHK2//AT2S3//AtNG1//ATEM6//ATRAD50//AtPERK4//BRIZ2 GO:0010557 positive regulation of macromolecule bio... BP 0.165132102878304 AT5G44310//AtRAD21.1//PPD5//ATBZIP61//ATNOA1//AT3G42860//ANAC070//AT3G09360//NDF5//RHON1//AT1G02700//ATELF5A-1//RAP2.6//SE//HMR GO:1901135 carbohydrate derivative metabolic proces... BP 0.165513526312134 GMD1//AT5G58330//AtPLR1//AT5G44020//PPD5//APT5//ATEIF2-A2//AT5G02870//AT3G59040//AT3G56010//PYRR//ATNOA1//AT4G29630//AT4G28450//AT3G01620//AT3G18510//RAP2.2//RPL18//ATYLMG1-1//AT3G02250//emb2184//NOP56//PSRP3/1//AT1G12990//AT1G13030//AT1G09130//AT2G42910//AT2G18220//AT2G25450