GOID TERM ONTOLOGY pValue Genes GO:0055067 monovalent inorganic cation homeostasis BP 0.00308763349588156 AP-3//ATCHX19//AHA10 GO:0010035 response to inorganic substance BP 0.00706579067809636 FDH//CYCH;1//ATDI8//AtTudor2//AT5G38895//SLAH3//ATP5//AT5G07330//AT3G62040//XERO1//ATCSP2//AT4G34180//AT4G32190//ATCIPK6//emb2726//AT4G20860//AT4G00910//AT1G66070//NRT1.9//ATCDSP32//CYP705A25//Hop2//c-NAD-MDH1//LEA//AtTHP1//ATBAG6//AKR4C9 GO:0050801 ion homeostasis BP 0.0070723775804906 SLAH3//ATP5//AP-3//AT4G32190//ATCHX19//ATPDHK//NDF6//AHA10 GO:0009664 plant-type cell wall organization BP 0.00781824915617622 AT5G04390//AT5G14610//ATROPGEF9//AT1G16760//AT3G25150//AT3G23270//MFP1//AT3G07840//LYM3//ATCHX1//ROPGAP3 GO:0055080 cation homeostasis BP 0.0131912241193875 ATP5//AP-3//AT4G32190//ATCHX19//ATPDHK//NDF6//AHA10 GO:0048878 chemical homeostasis BP 0.0166040600850696 SLAH3//ATP5//AP-3//AT4G32190//ATCHX19//ATPDHK//NDF6//AHA10 GO:0006753 nucleoside phosphate metabolic process BP 0.0211225333805553 NAD4L//NFD3//CYCH;1//AT5G64420//AtTudor2//ATP5//ATHDA14//SKS1//AT3G06200//MFP1//NDF6//GAE2//AHA10//Hop2 GO:0009117 nucleotide metabolic process BP 0.0211225333805553 NAD4L//NFD3//CYCH;1//AT5G64420//AtTudor2//ATP5//ATHDA14//SKS1//AT3G06200//MFP1//NDF6//GAE2//AHA10//Hop2 GO:0009061 anaerobic respiration BP 0.0227191051253887 AT1G19530//AT1G33055 GO:0042592 homeostatic process BP 0.0235372637622698 AT5G65180//SLAH3//ATP5//AP-3//AT4G32190//AESP//ATCHX19//ATPDHK//NDF6//ATCDSP32//AHA10 GO:0090305 nucleic acid phosphodiester bond hydroly... BP 0.0258896556020187 AT5G65180//ATRAD1//AESP//AT1G69630//DRB1 GO:0098771 inorganic ion homeostasis BP 0.0258896556020187 ATP5//AP-3//AT4G32190//ATCHX19//AHA10 GO:0010118 stomatal movement BP 0.0260763982887746 CYCH;1//ATCIPK6//ATB//COI1 GO:0071669 plant-type cell wall organization or bio... BP 0.0269912784045546 AT5G04390//GAUT12//AT5G14610//ATROPGEF9//AT1G16760//AT3G25150//AT3G23270//MFP1//AT3G07840//LYM3//ATCHX1//ROPGAP3 GO:0006829 zinc II ion transport BP 0.0313160963205953 AtMT4b//AtZIP12 GO:0055086 nucleobase-containing small molecule met... BP 0.033145770056659 NAD4L//NFD3//CYCH;1//AT5G64420//AtTudor2//ATP5//ATHDA14//SKS1//AT3G06200//MFP1//NDF6//GAE2//AHA10//Hop2 GO:0009631 cold acclimation BP 0.0360208401247143 ATDI8//ATCSP2 GO:0035725 sodium ion transmembrane transport BP 0.0369540150637811 ATCHX9//ATCHX19//ATCHX1 GO:0006633 fatty acid biosynthetic process BP 0.0378580863301245 KCS17//ACP4//AtLEC1//FTM1//KAS//AT2G37700 GO:0071310 cellular response to organic substance BP 0.0445406158721676 ATEOL1//AT5G38895//ATPGIP1//AT5G05600//AESP//ATBZIP10//AT4G01870//ATB//AT1G78990//AT1G69580//AtLEC1//FTM1//SKP2A//ATUGT85A1//SMC3//CHR35//DRB1//ANAC040//AtTHP1//COI1 GO:0000302 response to reactive oxygen species BP 0.0463393659613405 AT5G38895//ATP5//AT5G07330//AT4G32190//AT1G66070//Hop2//AtTHP1//ATBAG6 GO:1901700 response to oxygen-containing compound BP 0.0473021396685388 ATEOL1//CYCH;1//ATDI8//AT5G38895//SLAH3//ATP5//AT5G07330//ATPGIP1//AT5G05600//AT3G62040//XERO1//ATCSP2//AT4G32190//ATCIPK6//ACP4//AESP//AT4G20860//AT4G01870//ATB//AT1G66070//AtLEC1//FTM1//NRT1.9//ATCDSP32//ATAUX2-27//CYP705A25//ATUGT85A1//Hop2//LEA//DRB1//ANAC040//AtTHP1//ATBAG6//AKR4C9//COI1 GO:0006814 sodium ion transport BP 0.0521922178823504 ATCHX9//ATCHX19//ATCHX1 GO:0007059 chromosome segregation BP 0.0549256802998677 AT5G10710//AT5G65180//ATRAD1//AESP//AT1G69630//SMC3 GO:0006873 cellular ion homeostasis BP 0.0557765257705108 SLAH3//AP-3//ATPDHK//NDF6//AHA10 GO:0001101 response to acid chemical BP 0.0560919099042618 CYCH;1//ATDI8//AT5G38895//SLAH3//ATPGIP1//AT5G05600//AT3G62040//XERO1//ATCSP2//ATCIPK6//AT4G20860//AT4G01870//ATB//AtLEC1//FTM1//NRT1.9//ATCDSP32//CYP705A25//ATUGT85A1//LEA//DRB1//AtTHP1//AKR4C9//COI1 GO:0031047 gene silencing by RNA BP 0.0568650613742636 AT5G65180//AtTudor2//SDG18//AESP//SMC3//CHR35//DRB1//AT2G07170 GO:0055114 oxidation-reduction process BP 0.0618508236010385 NAD4L//PSBD//D2HGDH//FDH//CYP71B12//CYP81G1//AT5G05600//CYP76G1//ATCSP2//CYP81F4//CYP81F3//AT4G35820//AT4G25980//SKS1//AT4G20860//AT1G31490//CYP89A9//AT1G19530//FTM1//NDF6//AT1G33055//CYP705A25//AT1G22430//c-NAD-MDH1//CYP709B1//AT2G37700//AKR4C9 GO:0055072 iron ion homeostasis BP 0.0630781453859739 ATP5//AT4G32190 GO:0071555 cell wall organization BP 0.0634552360901084 AT5G04390//LNG1//GAUT12//AT5G14610//ATROPGEF9//AT1G16760//AT3G25150//AT3G23270//MFP1//AT3G07840//LYM3//ATCHX1//ROPGAP3 GO:0055082 cellular chemical homeostasis BP 0.0665701301626942 SLAH3//AP-3//ATPDHK//NDF6//AHA10 GO:0006260 DNA replication BP 0.066656722816943 CYCH;1//AT5G64420//SDG18//AESP//CHR35//AT2G07170//PIRL6 GO:0006139 nucleobase-containing compound metabolic... BP 0.0673464641556009 NAD4L//PSBD//CRR4//AT4G15820//PI//NFD3//ATHSF3//CYCH;1//AT5G65180//AT5G64420//AtTudor2//AtMYB19//AT5G46310//AT5G46390//SDG18//ATRAD1//NF-YC12//ATP5//AL1//AT3G59540//AT3G44240//ATHDA14//emb2726//ACP4//SKS1//AESP//PSAD-1//ATBZIP10//AT1G12650//AtbZIP58//AT3G06200//AT1G22910//AT3G15780//MFP1//AT3G16680//ATRAB8E//AtMYB106//AT1G69580//AT1G69630//AtLEC1//SKP2A//NDF6//GAE2//ATAUX2-27//AHA10//Hop2//TAF9//ATMGD3//ALKBH2//SMC3//CHR35//AT2G42780//AT1G61700//DRB1//AT1G03830//RPL24A//AT2G20060//ANAC040//ANAC038//WRKY3//AT2G18090//AT2G07170//PIRL6 GO:0031048 chromatin silencing by small RNA BP 0.0683803866442429 AT5G65180//SDG18//AESP//AT2G07170 GO:0098655 cation transmembrane transport BP 0.0735670764331782 AtZIP12//ATCHX9//ATP5//ATCHX19//ATCHX1 GO:0098662 inorganic cation transmembrane transport BP 0.0735670764331782 AtZIP12//ATCHX9//ATP5//ATCHX19//ATCHX1 GO:0009165 nucleotide biosynthetic process BP 0.0737460146946118 NFD3//CYCH;1//AT5G64420//ATP5//SKS1//AHA10//Hop2 GO:1901293 nucleoside phosphate biosynthetic proces... BP 0.0737460146946118 NFD3//CYCH;1//AT5G64420//ATP5//SKS1//AHA10//Hop2 GO:0010106 cellular response to iron ion starvation BP 0.0741337146662843 AtZIP12//BTS//NRT1.9//CYP705A25 GO:0032870 cellular response to hormone stimulus BP 0.0758675927510069 ATEOL1//AT5G38895//ATPGIP1//AT5G05600//AT4G01870//ATB//AT1G78990//AT1G69580//AtLEC1//SKP2A//ATUGT85A1//AtTHP1//COI1 GO:0071495 cellular response to endogenous stimulus BP 0.0758675927510069 ATEOL1//AT5G38895//ATPGIP1//AT5G05600//AT4G01870//ATB//AT1G78990//AT1G69580//AtLEC1//SKP2A//ATUGT85A1//AtTHP1//COI1 GO:0098660 inorganic ion transmembrane transport BP 0.0759854102777201 AtZIP12//ATCHX9//ATP5//ATCHX19//ATCHX1 GO:0042545 cell wall modification BP 0.0769356548869023 AT5G04390//AT5G14610//ATROPGEF9//AT1G16760//AT3G25150//AT3G23270//AT3G07840//LYM3//ATCHX1 GO:0000394 RNA splicing, via endonucleolytic cleava... BP 0.0770996952054962 AT4G15820//CYCH;1//ATRAB8E//TAF9 GO:0034641 cellular nitrogen compound metabolic pro... BP 0.0775414941288863 NAD4L//PSBD//CRR4//AT4G15820//PI//NFD3//ATEOL1//ATHSF3//CYCH;1//AT5G65180//AT5G64420//AtTudor2//AtMYB19//AT5G46310//AT5G46390//SDG18//ATRAD1//NF-YC12//SLAH3//ATP5//AT5G12970//AL1//AT3G59540//AT3G44240//CYP81F4//CYP81F3//ATHDA14//emb2726//ACP4//SKS1//AESP//PSAD-1//ATBZIP10//AT1G12650//AtbZIP58//AT3G06200//AT1G22910//AT3G15780//MFP1//AT3G16680//ATRAB8E//AtMYB106//AT1G69580//AT1G69630//AtLEC1//SKP2A//NDF6//GAE2//ATAUX2-27//AHA10//Hop2//TAF9//ATMGD3//ALKBH2//SMC3//CHR35//AT2G42780//AT1G61700//DRB1//AT1G03830//RPL24A//AT2G20060//ANAC040//ANAC038//WRKY3//AT2G18090//AT2G07170//PIRL6 GO:0007129 synapsis BP 0.0777643860320144 AT5G65180//AESP//AT1G69630 GO:0045143 homologous chromosome segregation BP 0.0777643860320144 AT5G65180//AESP//AT1G69630 GO:0006979 response to oxidative stress BP 0.0811170239943614 ATRAD1//AT5G38895//ATP5//AT5G07330//AT4G32190//AT4G25980//AT1G66070//ATCDSP32//Hop2//AtTHP1//ATBAG6 GO:0010565 regulation of cellular ketone metabolic ... BP 0.0817065338812836 ATEOL1//AtLEC1 GO:0070192 chromosome organization involved in meio... BP 0.0817932012756032 AT5G65180//AESP//AT1G69630 GO:0016070 RNA metabolic process BP 0.0860949829519727 PSBD//CRR4//AT4G15820//PI//NFD3//ATHSF3//CYCH;1//AT5G65180//AT5G64420//AtMYB19//AT5G46310//AT5G46390//SDG18//NF-YC12//AL1//AT3G59540//AT3G44240//ATHDA14//emb2726//ACP4//AESP//PSAD-1//ATBZIP10//AT1G12650//AtbZIP58//AT1G22910//AT3G15780//MFP1//AT3G16680//ATRAB8E//AtMYB106//AT1G69580//AtLEC1//SKP2A//NDF6//ATAUX2-27//TAF9//ATMGD3//SMC3//CHR35//AT2G42780//AT1G61700//DRB1//RPL24A//AT2G20060//ANAC040//ANAC038//WRKY3//AT2G18090//AT2G07170 GO:0010629 negative regulation of gene expression BP 0.0882822997548939 AT5G65180//AtTudor2//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//SMC3//CHR35//DRB1//AT2G07170 GO:0010605 negative regulation of macromolecule met... BP 0.0907496722234766 CYCH;1//AT5G65180//AtTudor2//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//SMC3//CHR35//DRB1//AT2G07170 GO:0046483 heterocycle metabolic process BP 0.0931524344900025 NAD4L//PSBD//CRR4//AT4G15820//PI//NFD3//ATHSF3//CYCH;1//AT5G65180//AT5G64420//AtTudor2//AtMYB19//AT5G46310//AT5G46390//SDG18//ATRAD1//NF-YC12//ATP5//AT5G12970//AL1//AT3G59540//AT3G44240//CYP81F4//CYP81F3//AT4G35820//ATHDA14//emb2726//ACP4//SKS1//AESP//PSAD-1//ATBZIP10//AT1G12650//AtbZIP58//AT3G06200//AT1G22910//AT3G15780//MFP1//AT3G16680//ATRAB8E//AtMYB106//AT1G69580//AT1G69630//AtLEC1//SKP2A//NDF6//GAE2//ATAUX2-27//AHA10//Hop2//TAF9//ATMGD3//ALKBH2//SMC3//CHR35//AT2G42780//AT1G61700//DRB1//AT1G03830//RPL24A//AT2G20060//ANAC040//ANAC038//WRKY3//AT2G18090//AT2G07170//PIRL6 GO:0009827 plant-type cell wall modification BP 0.0938329100300392 AT5G04390//ATROPGEF9//AT1G16760//AT3G23270//AT3G07840//ATCHX1 GO:0002238 response to molecule of fungal origin BP 0.0949410472555713 ATPHOS32//AT1G16760 GO:0009415 response to water BP 0.0950514063151674 CYCH;1//ATDI8//XERO1//ATCSP2//ATCIPK6//ATCDSP32//LEA//AKR4C9 GO:0070887 cellular response to chemical stimulus BP 0.0976874560781959 ATEOL1//AT5G38895//ATPGIP1//AT5G05600//AESP//ATBZIP10//AT4G01870//ATB//AT1G78990//AT1G69580//AtLEC1//FTM1//SKP2A//ATUGT85A1//SMC3//CHR35//DRB1//ANAC040//AtTHP1//COI1 GO:0042221 response to chemical BP 0.0994147072536621 ATEOL1//FDH//CYCH;1//ATDI8//AtTudor2//ATPHOS32//AT5G38895//SLAH3//ATP5//AT5G07330//ATPGIP1//AT5G05600//AT3G62040//XERO1//ATCSP2//AT4G34180//AT4G32190//ATCIPK6//emb2726//ATDTX35//ACP4//AESP//AT4G20860//ATBZIP10//AT4G01870//AT4G00910//ATB//AT1G16760//AT1G66070//AT1G78990//AT1G69580//AtLEC1//FTM1//SKP2A//NRT1.9//ATCDSP32//ATAUX2-27//CYP705A25//ATUGT85A1//Hop2//SMC3//CHR35//c-NAD-MDH1//LEA//DRB1//ANAC040//AtTHP1//ATBAG6//AKR4C9//COI1//NET4B GO:0009755 hormone-mediated signaling pathway BP 0.0994651181370717 ATEOL1//AT5G38895//ATPGIP1//AT5G05600//AT4G01870//ATB//AT1G78990//AT1G69580//AtLEC1//ATUGT85A1//AtTHP1//COI1 GO:0019693 ribose phosphate metabolic process BP 0.104266821559561 NAD4L//NFD3//CYCH;1//AtTudor2//ATP5//ATHDA14//MFP1//NDF6//AHA10 GO:0009926 auxin polar transport BP 0.107752355974696 ATCIPK6//ATB//ROPGAP3 GO:0019637 organophosphate metabolic process BP 0.107798242836225 NAD4L//AT5G10710//NFD3//CYCH;1//AT5G64420//AtTudor2//ATP5//AT5G04980//ATHDA14//emb2726//ACP4//SKS1//AT3G06200//MFP1//NDF6//GAE2//AHA10//Hop2 GO:0045229 external encapsulating structure organiz... BP 0.111108335320212 AT5G04390//LNG1//GAUT12//AT5G14610//ATROPGEF9//AT1G16760//AT3G25150//AT3G23270//MFP1//AT3G07840//LYM3//ATCHX1//ROPGAP3 GO:0007131 reciprocal meiotic recombination BP 0.113467438722453 AT5G65180//ATRAD1//AESP//AT1G69630 GO:0010075 regulation of meristem growth BP 0.113467438722453 AT2G45340//LNG1//MFP1//AT1G33055 GO:0035825 reciprocal DNA recombination BP 0.113467438722453 AT5G65180//ATRAD1//AESP//AT1G69630 GO:0090304 nucleic acid metabolic process BP 0.114343567075354 PSBD//CRR4//AT4G15820//PI//NFD3//ATHSF3//CYCH;1//AT5G65180//AT5G64420//AtMYB19//AT5G46310//AT5G46390//SDG18//ATRAD1//NF-YC12//AL1//AT3G59540//AT3G44240//ATHDA14//emb2726//ACP4//AESP//PSAD-1//ATBZIP10//AT1G12650//AtbZIP58//AT1G22910//AT3G15780//MFP1//AT3G16680//ATRAB8E//AtMYB106//AT1G69580//AT1G69630//AtLEC1//SKP2A//NDF6//ATAUX2-27//TAF9//ATMGD3//ALKBH2//SMC3//CHR35//AT2G42780//AT1G61700//DRB1//AT1G03830//RPL24A//AT2G20060//ANAC040//ANAC038//WRKY3//AT2G18090//AT2G07170//PIRL6 GO:0009914 hormone transport BP 0.117036697330332 ATCIPK6//ATB//ROPGAP3 GO:0060918 auxin transport BP 0.117036697330332 ATCIPK6//ATB//ROPGAP3 GO:0007127 meiosis I BP 0.11709529187523 AT5G65180//ATRAD1//AESP//AT1G69630 GO:0009266 response to temperature stimulus BP 0.117553156834911 ATHSF3//ATDI8//AT5G38895//AT5G07330//ATPGIP1//ATCSP2//AT4G34180//AESP//ATROPGEF9//AT1G66070//AT1G80030//c-NAD-MDH1//KAS//ANAC040//ATBAG6//AKR4C9 GO:0045892 negative regulation of transcription, DN... BP 0.119652417307925 AT5G65180//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//CHR35//AT2G07170 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.119652417307925 AT5G65180//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//CHR35//AT2G07170 GO:1903507 negative regulation of nucleic acid-temp... BP 0.119652417307925 AT5G65180//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//CHR35//AT2G07170 GO:0051567 histone H3-K9 methylation BP 0.120773328353678 SDG18//AESP//CHR35//AT2G07170 GO:0061647 histone H3-K9 modification BP 0.120773328353678 SDG18//AESP//CHR35//AT2G07170 GO:0006275 regulation of DNA replication BP 0.121787738967658 SDG18//AESP//AT2G07170 GO:0042138 meiotic DNA double-strand break formatio... BP 0.121787738967658 AT5G65180//AESP//AT1G69630 GO:0016458 gene silencing BP 0.121843347992415 AT5G65180//AtTudor2//SDG18//AESP//SMC3//CHR35//DRB1//AT2G07170 GO:0051253 negative regulation of RNA metabolic pro... BP 0.121843347992415 AT5G65180//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//CHR35//AT2G07170 GO:0010119 regulation of stomatal movement BP 0.123020999656816 CYCH;1//ATB GO:0016114 terpenoid biosynthetic process BP 0.127163159228487 AtMT4b//AtTudor2//emb2726//AT1G80030//LEA//ANAC040 GO:0045333 cellular respiration BP 0.128276487493716 NAD4L//ATCSP2//AT1G19530//AT1G33055 GO:0000038 very long-chain fatty acid metabolic pro... BP 0.130325360569793 KCS17//KAS GO:0042430 indole-containing compound metabolic pro... BP 0.131496795875104 AT5G12970//CYP81F4//CYP81F3 GO:0035266 meristem growth BP 0.132099837475725 AT2G45340//LNG1//MFP1//AT1G33055 GO:0045132 meiotic chromosome segregation BP 0.132099837475725 AT5G65180//ATRAD1//AESP//AT1G69630 GO:0006807 nitrogen compound metabolic process BP 0.132710728910981 NAD4L//PSBD//CRR4//AT4G15820//PI//NFD3//ATEOL1//ATHSF3//CYCH;1//AT5G65180//AT5G64420//AtTudor2//AtMYB19//AT5G46310//AT5G46390//SDG18//ATRAD1//NF-YC12//SLAH3//ATP5//AT5G12970//AL1//AT3G59540//AHAS//AT3G44240//CYP81F4//CYP81F3//AT4G35820//ATHDA14//emb2726//ACP4//SKS1//AESP//PSAD-1//ATBZIP10//AT1G12650//AtbZIP58//AT3G06200//AT1G31490//AT1G22910//AT3G15780//MFP1//AT3G16680//ATRAB8E//AtMYB106//AT1G69580//AT1G69630//AtLEC1//SKP2A//NDF6//GAE2//ATAUX2-27//AHA10//Hop2//TAF9//ATMGD3//ALKBH2//SMC3//CHR35//AT2G42780//AT1G61700//DRB1//AT1G03830//RPL24A//AT2G20060//ANAC040//ANAC038//WRKY3//AT2G18090//AT2G07170//PIRL6 GO:0008283 cell proliferation BP 0.132951870539981 SDG18//AESP//AtSEC24A//CHR35//AT2G07170 GO:1901657 glycosyl compound metabolic process BP 0.135189190207874 NAD4L//ATP5//CYP81F4//CYP81F3//ATHDA14//MFP1//AHA10 GO:0009860 pollen tube growth BP 0.135579427404985 AT5G04390//ATROPGEF9//AT1G16760//AT3G23270//ATCHX1//AT1G10770 GO:0030003 cellular cation homeostasis BP 0.135969827443684 AP-3//ATPDHK//NDF6//AHA10 GO:0042180 cellular ketone metabolic process BP 0.135969827443684 ATEOL1//AT4G01870//AtLEC1//SPS1 GO:0010167 response to nitrate BP 0.136202961799986 SLAH3//AT3G62040//AT4G20860//NRT1.9//CYP705A25 GO:0006270 DNA replication initiation BP 0.137727161911765 SDG18//AT2G07170 GO:0010039 response to iron ion BP 0.137727161911765 ATP5//AT4G32190 GO:0042335 cuticle development BP 0.137727161911765 ACP4//KAS GO:0010558 negative regulation of macromolecule bio... BP 0.137767846401291 AT5G65180//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//CHR35//AT2G07170 GO:0045934 negative regulation of nucleobase-contai... BP 0.137767846401291 AT5G65180//SDG18//AESP//AT3G15780//SKP2A//ATMGD3//CHR35//AT2G07170