GOID TERM ONTOLOGY pValue Genes GO:0042398 cellular modified amino acid biosyntheti... BP 3.23049845428836e-05 A11//ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0006598 polyamine catabolic process BP 4.04918053834327e-05 ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0006595 polyamine metabolic process BP 0.00028449318987141 ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0006575 cellular modified amino acid metabolic p... BP 0.00037575447348266 A11//ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0009698 phenylpropanoid metabolic process BP 0.00232243600769755 UGT72E2//ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//ATCCR1//MAT3 GO:0006816 calcium ion transport BP 0.00611778020130175 AtPPa5//ATGSR2//AT1G50410//MAT3 GO:0071241 cellular response to inorganic substance BP 0.00636189949618181 RAP2.11//ACS9//AGL44 GO:0009310 amine catabolic process BP 0.00731709540312694 ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0042402 cellular biogenic amine catabolic proces... BP 0.00731709540312694 ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0009736 cytokinin-activated signaling pathway BP 0.00821905555601646 CKI1//ARR19//ARR15//ARR3 GO:0071368 cellular response to cytokinin stimulus BP 0.00880957566254983 CKI1//ARR19//ARR15//ARR3 GO:0000160 phosphorelay signal transduction system BP 0.010521276756168 CKI1//ARR19//AtERF98//ARR15//ARR3 GO:0045132 meiotic chromosome segregation BP 0.0222157479692493 SHOC1//SNI1//ATORC4//AT2G42720 GO:0048364 root development BP 0.0226994882352567 ATCSLB05//LOI1//RAP2.11//ARK1//ATXTH14//ANAC070//RALFL27//RHS12//WPP2//ARF17//AGL44 GO:0022622 root system development BP 0.0231294198596073 ATCSLB05//LOI1//RAP2.11//ARK1//ATXTH14//ANAC070//RALFL27//RHS12//WPP2//ARF17//AGL44 GO:0009911 positive regulation of flower developmen... BP 0.0233109448995765 CIB5//EBS GO:0090558 plant epidermis development BP 0.025369238042475 ATCSLB05//ICK6//DCR//AT5G01890//ARK1//AT4G28650//ATXTH14//RALFL27//RHS12//AGL44//AtRLP29 GO:0010017 red or far-red light signaling pathway BP 0.0263649203798352 ROC1//ARR3 GO:0071489 cellular response to red or far red ligh... BP 0.0263649203798352 ROC1//ARR3 GO:0009735 response to cytokinin BP 0.0280590727268403 CKI1//ARR19//ARR15//ARR3 GO:0000280 nuclear division BP 0.0288796613177599 SHOC1//ICK6//SNI1//WPP2//ATORC4//AT2G42720 GO:0006563 L-serine metabolic process BP 0.029570916497053 ATSERAT2;1//AT2G17630 GO:0080167 response to karrikin BP 0.0319648449232528 AT5G10120//ATMSRA2//A11//ATPAL2 GO:0006468 protein phosphorylation BP 0.0324029790945409 CKI1//AT5G49780//ICK6//AT5G10530//AT5G01890//ATMPK10//ROC1//AT4G28650//AT4G24480//SNI1//AtPERK3//AT3G10540//BSK9//ATMPK11//AT1G72540 GO:0009744 response to sucrose BP 0.032630343118367 UGT84A1//LHCA1//A11//ATGSR2//AT1G71780 GO:0034285 response to disaccharide BP 0.032630343118367 UGT84A1//LHCA1//A11//ATGSR2//AT1G71780 GO:2000243 positive regulation of reproductive proc... BP 0.0329233485067301 CIB5//EBS GO:1901565 organonitrogen compound catabolic proces... BP 0.033313098104751 ATPAL2//AT4G34880//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0006576 cellular biogenic amine metabolic proces... BP 0.0348522703385491 ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0051052 regulation of DNA metabolic process BP 0.0348522703385491 ICK6//SNI1//AT1G75150//LGO//AT2G42720 GO:0007049 cell cycle BP 0.0348990528662246 SHOC1//ICK6//AT4G28200//SNI1//AT1G75150//LGO//AT1G17680//WPP2//ATORC4//AGL44//AT2G42720//AT2G16960 GO:0009755 hormone-mediated signaling pathway BP 0.0353310386366781 CKI1//AT5G10120//ROC1//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//ARF17//ARR15//ARR3 GO:0051716 cellular response to stimulus BP 0.0363878198466636 CKI1//RAP2.11//AT5G49780//ODB2//AT5G38850//AT5G10120//ATMSRA2//AT5G02430//AT5G01890//AT3G62270//ATMPK10//ACS9//ROC1//AT4G34880//AT4G28650//AT4G28200//AT4G26910//SNI1//AT4G03010//ARR19//ABCB17//AtERF98//ATMPK11//ATSERAT2;1//AT1G78410//bZIP21//ARF17//ARR15//ARR3//AGL44//AtRLP29//AT2G42720//AT2G19780 GO:0032204 regulation of telomere maintenance BP 0.0364167695798638 SNI1//AT2G42720 GO:0043247 telomere maintenance in response to DNA ... BP 0.0364167695798638 SNI1//AT2G42720 GO:0033043 regulation of organelle organization BP 0.0371659164461099 AtFH19//ARK1//SNI1//AGL44//AT2G42720 GO:0044106 cellular amine metabolic process BP 0.0395719805397857 ATPAL2//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:0000723 telomere maintenance BP 0.0400458678628715 SNI1//AT2G42720 GO:0032200 telomere organization BP 0.0400458678628715 SNI1//AT2G42720 GO:0032844 regulation of homeostatic process BP 0.0400458678628715 SNI1//AT2G42720 GO:0071248 cellular response to metal ion BP 0.0400458678628715 RAP2.11//ACS9 GO:0009308 amine metabolic process BP 0.0402288444452696 ATPAL2//EDA40//CCoAOMT1//ATGSR2//AT3G13650//MAT3 GO:1903046 meiotic cell cycle process BP 0.0422627238057521 SHOC1//SNI1//ATORC4//AT2G42720 GO:0048285 organelle fission BP 0.0423600939221238 SHOC1//ICK6//SNI1//WPP2//ATORC4//AT2G42720 GO:0070887 cellular response to chemical stimulus BP 0.0424066105655301 CKI1//RAP2.11//AT5G10120//ATMSRA2//ACS9//ROC1//AT4G34880//AT4G28200//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//ARF17//ARR15//ARR3//AGL44 GO:0031047 gene silencing by RNA BP 0.0434519486770339 ICK6//AT4G28200//SNI1//AT1G75150//ATORC4//AT2G42720 GO:0060249 anatomical structure homeostasis BP 0.0438054635953978 SNI1//AT2G42720 GO:0009699 phenylpropanoid biosynthetic process BP 0.0438698856816803 ATPAL2//CCoAOMT1//AT3G13650//ATCCR1 GO:0048468 cell development BP 0.0442551803197218 ATCSLB05//AT5G24940//DCR//ARK1//AT4G28200//RALFL27//PIP5K6//LGO//AT3G10540//AGL44//AGL3 GO:0007059 chromosome segregation BP 0.0471862392012405 SHOC1//SNI1//ATORC4//AT2G42720 GO:0051321 meiotic cell cycle BP 0.0473501334649902 SHOC1//SNI1//ATORC4//AGL44//AT2G42720 GO:0032870 cellular response to hormone stimulus BP 0.0485184470797254 CKI1//AT5G10120//ROC1//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//ARF17//ARR15//ARR3 GO:0044700 single organism signaling BP 0.0487165292489463 CKI1//AT5G49780//AT5G38850//AT5G10120//AT5G02430//AT5G01890//ATMPK10//ROC1//AT4G28650//AT4G03010//RALFL27//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//bZIP21//ARF17//ARR15//ARR3//AtRLP29//AT2G19780 GO:0006275 regulation of DNA replication BP 0.0488953570958614 ICK6//SNI1//AT1G75150//LGO GO:0023052 signaling BP 0.0491840952573316 CKI1//AT5G49780//AT5G38850//AT5G10120//AT5G02430//AT5G01890//ATMPK10//ROC1//AT4G28650//AT4G03010//RALFL27//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//bZIP21//ARF17//ARR15//ARR3//AtRLP29//AT2G19780 GO:0071495 cellular response to endogenous stimulus BP 0.0492553281948523 CKI1//AT5G10120//ROC1//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//ARF17//ARR15//ARR3 GO:0009581 detection of external stimulus BP 0.0516960719371044 ROC1//ATMPK11 GO:0016310 phosphorylation BP 0.0520106645974669 CKI1//AT5G50370//AT5G49780//ICK6//AT5G10530//AT5G01890//ATMPK10//ROC1//AT4G28650//AT4G24480//SNI1//AtPERK3//AT3G10540//BSK9//ATMPK11//AT1G72540//AT1G78410 GO:0030154 cell differentiation BP 0.0526130026965743 ATCSLB05//AT5G24940//DCR//ARK1//EDA40//AT4G28200//ATXTH14//RALFL27//PIP5K6//RHS12//LGO//AT3G10540//ATORC4//AGL44//AGL3 GO:0006342 chromatin silencing BP 0.0530058761451269 ICK6//SNI1//AT1G75150//ATORC4//AT2G42720 GO:0007165 signal transduction BP 0.0536206486587459 CKI1//AT5G49780//AT5G38850//AT5G10120//AT5G02430//AT5G01890//ATMPK10//ROC1//AT4G28650//AT4G03010//ARR19//ABCB17//AtERF98//ATMPK11//AT1G78410//bZIP21//ARF17//ARR15//ARR3//AtRLP29//AT2G19780 GO:0000741 karyogamy BP 0.0558173603408247 EDA40//AT4G28200 GO:0048284 organelle fusion BP 0.0558173603408247 EDA40//AT4G28200 GO:0045814 negative regulation of gene expression, ... BP 0.0559754151354707 ICK6//SNI1//AT1G75150//ATORC4//AT2G42720 GO:0048856 anatomical structure development BP 0.0584531637506768 CKI1//ATCSLB05//LOI1//CIB5//RAP2.11//ACP5//AT5G24940//ICK6//DCR//AT5G01890//ARK1//AT3G54080//EDA40//AT4G28650//AT4G28200//AT4G28370//ATXTH14//EBS//SNI1//ANAC070//ATSUS3//DLAH//RALFL27//ABCB17//AtPERK3//PIP5K6//RHS12//LGO//AT3G10540//AT1G17680//WPP2//ARF17//ATORC4//emb1129//AGL44//AtRLP29//AGL3//AT2G47670 GO:0090627 plant epidermal cell differentiation BP 0.0596331554300512 ATCSLB05//ARK1//ATXTH14//RALFL27//RHS12//LGO//AGL44 GO:0042221 response to chemical BP 0.0596473818036875 CKI1//UGT84A1//RAP2.11//UGT72E2//AT5G57410//ATMYB64//AT5G10120//ATMSRA2//AT5G01890//AT3G62270//LHCA1//A11//ACS9//ROC1//AT4G34880//CCoAOMT1//ADS1//AT4G28650//AT4G28200//AT4G23030//ATSUS3//ATGSR2//ARR19//ABCB17//AtERF98//AT1G17680//ATMPK11//ATSERAT2;1//AT1G78410//AT1G71780//ARF17//ARR15//ARR3//AT2G17630//AT1G05710//AGL44//MAT3//AT2G36430//AtRLP29 GO:0009889 regulation of biosynthetic process BP 0.060015767896838 CKI1//CIB5//ICK6//ATMYB64//AT5G10120//ATPAL2//ACS9//CCoAOMT1//AT4G28200//EBS//ATWRKY31//SNI1//ANAC070//AT1G75150//ARR19//AtERF98//LGO//ATMPK11//ASG4//bZIP21//ARF17//ATORC4//ARR15//ARR3//AGL44//AT2G42720//AGL3 GO:0048731 system development BP 0.0608172665095339 ATCSLB05//LOI1//CIB5//RAP2.11//DCR//AT5G01890//ARK1//AT3G54080//AT4G28650//AT4G28200//AT4G28370//ATXTH14//EBS//SNI1//ANAC070//ATSUS3//DLAH//RALFL27//ABCB17//RHS12//AT1G17680//WPP2//ARF17//ATORC4//emb1129//AGL44//AtRLP29//AGL3//AT2G47670 GO:0090626 plant epidermis morphogenesis BP 0.0638123264039769 DCR//AT5G01890//AT4G28650//AGL44//AtRLP29 GO:0006855 drug transmembrane transport BP 0.0643885075594101 ADS1//AT4G23030 GO:0009734 auxin-activated signaling pathway BP 0.0643885075594101 ABCB17//ARF17 GO:0051128 regulation of cellular component organiz... BP 0.0647354463338726 AtFH19//ARK1//SNI1//AtPERK3//AGL44//AT2G42720 GO:0007062 sister chromatid cohesion BP 0.0655660865032853 SNI1//ATORC4//AT2G42720 GO:0007126 meiotic nuclear division BP 0.0678351208884013 SHOC1//SNI1//ATORC4//AT2G42720 GO:0033044 regulation of chromosome organization BP 0.068299363558258 SNI1//AGL44//AT2G42720 GO:0051493 regulation of cytoskeleton organization BP 0.068299363558258 AtFH19//ARK1//AGL44 GO:0015893 drug transport BP 0.0688293611788328 ADS1//AT4G23030 GO:0010556 regulation of macromolecule biosynthetic... BP 0.0726152993175222 CKI1//CIB5//ICK6//ATMYB64//AT5G10120//ACS9//AT4G28200//EBS//ATWRKY31//SNI1//ANAC070//AT1G75150//ARR19//AtERF98//LGO//ATMPK11//ASG4//bZIP21//ARF17//ATORC4//ARR15//ARR3//AGL44//AT2G42720//AGL3 GO:2000112 regulation of cellular macromolecule bio... BP 0.0726152993175222 CKI1//CIB5//ICK6//ATMYB64//AT5G10120//ACS9//AT4G28200//EBS//ATWRKY31//SNI1//ANAC070//AT1G75150//ARR19//AtERF98//LGO//ATMPK11//ASG4//bZIP21//ARF17//ATORC4//ARR15//ARR3//AGL44//AT2G42720//AGL3 GO:0006418 tRNA aminoacylation for protein translat... BP 0.0733679220957009 AT5G26710//ATNS2 GO:0010074 maintenance of meristem identity BP 0.0733679220957009 AT4G28200//AGL3 GO:0010393 galacturonan metabolic process BP 0.0733679220957009 AT3G62270//AT4G28370 GO:0042493 response to drug BP 0.0733679220957009 ADS1//AT4G23030 GO:0043038 amino acid activation BP 0.0733679220957009 AT5G26710//ATNS2 GO:0043039 tRNA aminoacylation BP 0.0733679220957009 AT5G26710//ATNS2 GO:0045488 pectin metabolic process BP 0.0733679220957009 AT3G62270//AT4G28370 GO:0048582 positive regulation of post-embryonic de... BP 0.0733679220957009 CIB5//EBS GO:0070838 divalent metal ion transport BP 0.074160832002736 AtPPa5//ATGSR2//AT1G50410//MAT3 GO:0048443 stamen development BP 0.0763338571638745 AT5G01890//AT4G28650//AtRLP29//AGL3 GO:0048466 androecium development BP 0.0763338571638745 AT5G01890//AT4G28650//AtRLP29//AGL3 GO:0072511 divalent inorganic cation transport BP 0.0763338571638745 AtPPa5//ATGSR2//AT1G50410//MAT3 GO:0007131 reciprocal meiotic recombination BP 0.0768035477025322 SHOC1//SNI1//AT2G42720 GO:0035825 reciprocal DNA recombination BP 0.0768035477025322 SHOC1//SNI1//AT2G42720 GO:0016579 protein deubiquitination BP 0.0779999701341464 AT4G28200//SNI1 GO:0071478 cellular response to radiation BP 0.0779999701341464 ROC1//ARR3 GO:0071482 cellular response to light stimulus BP 0.0779999701341464 ROC1//ARR3 GO:0010103 stomatal complex morphogenesis BP 0.0797373293063669 AT5G01890//AT4G28650//AtRLP29 GO:0010374 stomatal complex development BP 0.080775336151567 ICK6//AT5G01890//AT4G28650//AtRLP29 GO:0031326 regulation of cellular biosynthetic proc... BP 0.0822389711410723 CKI1//CIB5//ICK6//ATMYB64//AT5G10120//ACS9//AT4G28200//EBS//ATWRKY31//SNI1//ANAC070//AT1G75150//ARR19//AtERF98//LGO//ATMPK11//ASG4//bZIP21//ARF17//ATORC4//ARR15//ARR3//AGL44//AT2G42720//AGL3