GOID TERM ONTOLOGY pValue Genes GO:0006661 phosphatidylinositol biosynthetic proces... BP 0.00379427591408738 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G03180//AT3G03590//UREF GO:0046474 glycerophospholipid biosynthetic process BP 0.00407767644339279 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G29185//AT3G03180//AT3G03590//UREF//LPAT3 GO:0045017 glycerolipid biosynthetic process BP 0.0061043310362289 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G29185//AT3G03180//AT3G03590//UREF//LPAT3 GO:0006575 cellular modified amino acid metabolic p... BP 0.0123115744713906 5-FCL//FOLB2//PDH-E1//AGP12//RALFL22 GO:0042398 cellular modified amino acid biosyntheti... BP 0.0125870806886192 5-FCL//PDH-E1//AGP12//RALFL22 GO:0046488 phosphatidylinositol metabolic process BP 0.0135412732522034 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G03180//AT3G03590//UREF GO:0016132 brassinosteroid biosynthetic process BP 0.0168908734255226 BEN1//AGP22//BCCP//PDH-E1//PIP1;3//ATDET2//AT2G29660 GO:0006650 glycerophospholipid metabolic process BP 0.0178709972251618 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G29185//AT3G03180//AT3G03590//UREF//LPAT3 GO:0016129 phytosteroid biosynthetic process BP 0.0180091399826088 BEN1//AGP22//BCCP//PDH-E1//PIP1;3//ATDET2//AT2G29660 GO:0016131 brassinosteroid metabolic process BP 0.0191784984388984 BEN1//AGP22//BCCP//PDH-E1//PIP1;3//ATDET2//AT2G29660 GO:0016128 phytosteroid metabolic process BP 0.0204000241356816 BEN1//AGP22//BCCP//PDH-E1//PIP1;3//ATDET2//AT2G29660 GO:0006598 polyamine catabolic process BP 0.0254654272525227 PDH-E1//AGP12//RALFL22 GO:0006694 steroid biosynthetic process BP 0.0256120182850858 BEN1//AGP7//AGP22//BCCP//PDH-E1//AT3G28200//PIP1;3//GATL8//ATDET2//AT2G29660 GO:0046486 glycerolipid metabolic process BP 0.0258474521740858 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G29185//AT3G03180//AT3G03590//UREF//LPAT3 GO:0009845 seed germination BP 0.0283708848874004 SPT//LECRKA4.3//AT2S3//AT2301//EDA8//RGL//CRB//AtGRF1 GO:0042446 hormone biosynthetic process BP 0.0290036489568957 BEN1//AGP22//CYP716A2//BCCP//PDH-E1//AT3G27150//ATSKL1//PIP1;3//ATDET2//AT2G29660 GO:0042445 hormone metabolic process BP 0.0301169240567352 BEN1//AGP22//CYP716A2//BCCP//EDA40//PDH-E1//AT3G27150//ATSKL1//PIP1;3//ATDET2//AT2G29660 GO:0009310 amine catabolic process BP 0.0315656756740537 CYP716A2//PDH-E1//AGP12//ATSKL1//RALFL22 GO:0042402 cellular biogenic amine catabolic proces... BP 0.0315656756740537 CYP716A2//PDH-E1//AGP12//ATSKL1//RALFL22 GO:0090351 seedling development BP 0.0327730120357352 SPT//LECRKA4.3//AT2S3//AT2301//EDA8//RGL//CRB//AtGRF1 GO:0010089 xylem development BP 0.0339154641860764 COBL4//TBL36//TET5//AHP6//ATELF5A-1 GO:0010583 response to cyclopentenone BP 0.0339154641860764 ABCA7//ATEXLA2//AT4G37295//FLA18//ATAUX2-27 GO:0008202 steroid metabolic process BP 0.0367214684147398 BEN1//AGP7//AGP22//BCCP//PDH-E1//AT3G28200//PIP1;3//GATL8//ATDET2//AT2G29660 GO:0005985 sucrose metabolic process BP 0.0436165599862486 ATSUS6//AT1G66430 GO:0006083 acetate metabolic process BP 0.0436165599862486 AT1G58150//AT1G66430 GO:0006760 folic acid-containing compound metabolic... BP 0.0436165599862486 5-FCL//FOLB2 GO:0006825 copper ion transport BP 0.0436165599862486 COPT5//AT3G48970 GO:0051247 positive regulation of protein metabolic... BP 0.0436165599862486 CSP41A//ATELF5A-1 GO:0051235 maintenance of location BP 0.0443809974576646 AT5G56100//NKS1//AT2S3//EDA8//CRB GO:0044036 cell wall macromolecule metabolic proces... BP 0.0444158145396577 COBL4//F8H//TBL36//TET5//AT4G22110//AT4G21060//ATXYN1//IQD10//AT1G72230//LYM1//ANAC012 GO:0009737 response to abscisic acid BP 0.0450345175404071 ATDI21//COPT5//AtCAF1b//LECRKA4.3//AT3G57450//AT2301//EDA8//CIPK11//AtHB33//ATERF-7//AT3G05000//RGL//CRB//AtGRF1 GO:1901565 organonitrogen compound catabolic proces... BP 0.0502729493581882 CYP716A2//AT5G23820//AT5G11840//J20//PDH-E1//AGP12//ATSKL1//RALFL22//AT1G15710 GO:0006595 polyamine metabolic process BP 0.0520625856284658 PDH-E1//AGP12//RALFL22 GO:0009957 epidermal cell fate specification BP 0.0521302004802076 ATMYC1//AT1G09600 GO:0042558 pteridine-containing compound metabolic ... BP 0.0521302004802076 5-FCL//FOLB2 GO:0051186 cofactor metabolic process BP 0.054413781368194 ATDUF3//5-FCL//FOLB2//PGL4//PGL5//FTRA1//BCCP//AT5G11840//CSP41A//PGL2//J20//PDH-E1//ATSKL1//PIP1;3//TOR2//COX10 GO:0010087 phloem or xylem histogenesis BP 0.0633340415910859 COBL4//TBL36//TET5//AHP6//ATELF5A-1 GO:0006473 protein acetylation BP 0.0707107684124436 AtSGF29b//ARP6 GO:0016579 protein deubiquitination BP 0.0707107684124436 CHR23//AT3G42860 GO:0022411 cellular component disassembly BP 0.0707107684124436 AT4G37295//ATELF5A-1 GO:0009698 phenylpropanoid metabolic process BP 0.0731724898358884 LAC16//PDH-E1//AGP12//AT3G13662//ATPHO1//RALFL22//ANAC012 GO:0010413 glucuronoxylan metabolic process BP 0.0731724898358884 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0016126 sterol biosynthetic process BP 0.0731724898358884 BEN1//AGP7//BCCP//PDH-E1//AT3G28200//PIP1;3//GATL8 GO:0045492 xylan biosynthetic process BP 0.0731724898358884 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0097305 response to alcohol BP 0.0766326685166674 ATDI21//COPT5//AtCAF1b//LECRKA4.3//AT3G57450//AT4G37295//AT2301//EDA8//CIPK11//AtHB33//ATERF-7//AT3G05000//RGL//ATAUX2-27//CRB//AtGRF1 GO:0045491 xylan metabolic process BP 0.0790493959596577 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0008380 RNA splicing BP 0.0794331670329908 AT1G57540//AT5G19030//AT;CDCKD;3//AT1G07170//AT1G22910//AT3G16200//TAF13//At-RSZ21 GO:0000398 mRNA splicing, via spliceosome BP 0.0803527372261947 AT5G19030//AT1G07170//AT1G22910//At-RSZ21 GO:0019915 lipid storage BP 0.0803527372261947 AT5G56100//AT2S3//EDA8//CRB GO:0009960 endosperm development BP 0.0806880164932019 TTL//TAF13 GO:0016125 sterol metabolic process BP 0.0820880119777266 BEN1//AGP7//BCCP//PDH-E1//AT3G28200//PIP1;3//GATL8 GO:0044038 cell wall macromolecule biosynthetic pro... BP 0.0820880119777266 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0070589 cellular component macromolecule biosynt... BP 0.0820880119777266 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0070592 cell wall polysaccharide biosynthetic pr... BP 0.0820880119777266 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0006397 mRNA processing BP 0.086181833160545 AtCAF1b//AT5G19030//AT1G07170//AT1G22910//At-RSZ21 GO:0000041 transition metal ion transport BP 0.0862078541807819 COPT5//AGP22//AT3G48970//AT4G30170//AT3G27150//ATPHO1//PIP1;3//ATNRAMP6//ATCDF1 GO:0006417 regulation of translation BP 0.0877941645722333 CSP41A//AT3G49100//ATELF5A-1 GO:0006732 coenzyme metabolic process BP 0.0886588643654055 5-FCL//FOLB2//PGL4//PGL5//FTRA1//BCCP//CSP41A//PGL2//PDH-E1//ATSKL1//PIP1;3//TOR2 GO:0006414 translational elongation BP 0.0945403070288042 AT3G49100//AT3G44590//ATELF5A-1 GO:0009312 oligosaccharide biosynthetic process BP 0.0945403070288042 ATSUS6//AT1G66430//RGL GO:0006084 acetyl-CoA metabolic process BP 0.0955017125992892 BCCP//PDH-E1//PIP1;3//TOR2 GO:0000375 RNA splicing, via transesterification re... BP 0.100829715676392 AT5G19030//AT1G07170//AT1G22910//At-RSZ21 GO:0000377 RNA splicing, via transesterification re... BP 0.100829715676392 AT5G19030//AT1G07170//AT1G22910//At-RSZ21 GO:0010817 regulation of hormone levels BP 0.104836103326671 BEN1//AGP22//CYP716A2//BCCP//EDA40//PDH-E1//AT3G27150//ATSKL1//PIP1;3//ATDET2//LCR68//AT2G29660 GO:0008610 lipid biosynthetic process BP 0.106589030948625 BEN1//ATSUS6//AT5G10710//AT1G57540//AGP7//AGP22//FTRA1//BCCP//AT3G62920//PIS2//AT2301//ATFAH2//SMAP1//PDH-E1//AT3G28200//AT3G14430//AT3G29185//ATSKL1//AT3G03180//AT3G03590//PIP1;3//UREF//GATL8//CRB//LPAT3//ATDET2//AT2G29660 GO:0046165 alcohol biosynthetic process BP 0.107572392333034 BEN1//AGP7//AGP22//BCCP//AT2301//PDH-E1//AT3G28200//PIP1;3//GATL8//ATDET2//AT2G29660 GO:0010410 hemicellulose metabolic process BP 0.108771698362875 COBL4//F8H//AT4G22110//ATXYN1//IQD10//AT1G72230//ANAC012 GO:0006865 amino acid transport BP 0.109825512244318 ATFOLT1//AT5G61890//AT5G41800//RHA3B//AT1G64380//AtGDU4 GO:0006637 acyl-CoA metabolic process BP 0.111885785746438 BCCP//PDH-E1//PIP1;3//TOR2 GO:0035383 thioester metabolic process BP 0.111885785746438 BCCP//PDH-E1//PIP1;3//TOR2 GO:0006338 chromatin remodeling BP 0.112879844692127 ATSWI3B//ARP6 GO:0006875 cellular metal ion homeostasis BP 0.115978191026037 NKS1//ATNRAMP6//ATCDF1 GO:0048573 photoperiodism, flowering BP 0.117544163773757 FTIP1//AT2301//AT1G25420//ATSWI3B//At-RSZ21 GO:0032269 negative regulation of cellular protein ... BP 0.123496161361494 AT3G49100//AT;CDCKD;3//AT1G64010 GO:0051248 negative regulation of protein metabolic... BP 0.123496161361494 AT3G49100//AT;CDCKD;3//AT1G64010 GO:0009308 amine metabolic process BP 0.12365727907033 CYP716A2//EDA40//PDH-E1//AT3G27150//AGP12//ATSKL1//RALFL22 GO:0016485 protein processing BP 0.135861953188704 AT1G64010//CLPB-M GO:0008654 phospholipid biosynthetic process BP 0.136371660524909 AT5G10710//AT1G57540//AT3G62920//PIS2//SMAP1//AT3G14430//AT3G29185//ATSKL1//AT3G03180//AT3G03590//UREF//LPAT3 GO:0010106 cellular response to iron ion starvation BP 0.142803897784296 AGP22//AT4G30170//AT3G27150//ATPHO1//PIP1;3 GO:0010162 seed dormancy process BP 0.142803897784296 AT2301//EDA8//RGL//CRB//AtGRF1 GO:0022611 dormancy process BP 0.142803897784296 AT2301//EDA8//RGL//CRB//AtGRF1 GO:0009913 epidermal cell differentiation BP 0.14771109847003 ATMYC1//AT1G09600 GO:0018208 peptidyl-proline modification BP 0.14771109847003 AT5G13410//AT4G21060 GO:0030855 epithelial cell differentiation BP 0.14771109847003 ATMYC1//AT1G09600 GO:0006576 cellular biogenic amine metabolic proces... BP 0.148118794889916 CYP716A2//PDH-E1//AGP12//ATSKL1//RALFL22 GO:0009648 photoperiodism BP 0.148118794889916 FTIP1//AT2301//AT1G25420//ATSWI3B//At-RSZ21 GO:0001708 cell fate specification BP 0.155200597736978 ATMYC1//HMGA//AT1G09600 GO:0044106 cellular amine metabolic process BP 0.158995466033119 CYP716A2//PDH-E1//AGP12//ATSKL1//RALFL22 GO:0031668 cellular response to extracellular stimu... BP 0.162715466379875 AGP22//ATCYS1//PYRR//AT4G30170//AT3G27150//ATPHO1//PIP1;3//AT1G64150//ATATG8E GO:0071496 cellular response to external stimulus BP 0.162715466379875 AGP22//ATCYS1//PYRR//AT4G30170//AT3G27150//ATPHO1//PIP1;3//AT1G64150//ATATG8E GO:0015824 proline transport BP 0.163491899410257 AT5G41800//RHA3B//AT1G64380 GO:0033993 response to lipid BP 0.164615858995278 ATDI21//COPT5//AtMYB24//AtCAF1b//LECRKA4.3//AT3G57450//AT4G37295//AT2301//EDA8//CIPK11//AtHB33//ATERF-7//AT3G05000//RGL//ATAUX2-27//CRB//AtGRF1 GO:0015849 organic acid transport BP 0.168634158013029 ATFOLT1//AT5G61890//AT5G41800//RHA3B//AT1G64380//AtGDU4 GO:0046942 carboxylic acid transport BP 0.168634158013029 ATFOLT1//AT5G61890//AT5G41800//RHA3B//AT1G64380//AtGDU4 GO:0050826 response to freezing BP 0.1719121808353 AT2S3//EDA8//CRB GO:0008544 epidermis development BP 0.171980403748487 ATMYC1//AT1G09600 GO:0009106 lipoate metabolic process BP 0.171980403748487 FTRA1//ATSKL1 GO:0032940 secretion by cell BP 0.171980403748487 HCF106//AT4G31740 GO:0046903 secretion BP 0.171980403748487 HCF106//AT4G31740 GO:0006066 alcohol metabolic process BP 0.172514531425581 BEN1//AT1G58150//AGP7//AGP22//BCCP//AT2301//PDH-E1//AT3G28200//PIP1;3//GATL8//ATDET2//AT2G29660