GOID	TERM	ONTOLOGY	pValue	Genes
GO:0043436	oxoacid metabolic process	BP	0.000152356190183289	FdC1//AT-P5C1//CYP81F2//PSL4//AT5G55450//AT5G51140//PFK2//ATCBP20//ATUK/UPRT1//GDH1//AT5G17760//GLN1;4//VAT1//TUB6//CBSX3//14-3-3lambda//ATGA20OX3//SNRK2-2//AT3G50850//SHL1//IDH-III//XLG2//AT4G33740//AT4G31180//AT4G24750//ATSR//IBR1//AOP//LIF2//PSP//EMB1303//AT3G14860//AT3G29185//bHLH121//AT3G16200//ATCNGC20//BUL1//AT3G02630//AT3G01740//ADT2//AJH2//NRP1//BIO2//UGT74F1//AT1G06790//ADS1//OTC//ATPDI8//AT2G01060//AT1G43580//ALDH5F1//KCS12//ABI5//AT1G12050//CSD1//AT1G24360//AT1G23780//AT2G16800//HY3//AT2G35120
GO:0006082	organic acid metabolic process	BP	0.000156807663214083	FdC1//AT-P5C1//CYP81F2//PSL4//AT5G55450//AT5G51140//PFK2//ATCBP20//ATUK/UPRT1//GDH1//AT5G17760//GLN1;4//VAT1//TUB6//CBSX3//14-3-3lambda//ATGA20OX3//SNRK2-2//AT3G50850//SHL1//IDH-III//XLG2//AT4G33740//AT4G31180//AT4G24750//ATSR//IBR1//AOP//LIF2//PSP//EMB1303//AT3G14860//AT3G29185//bHLH121//AT3G16200//ATCNGC20//BUL1//AT3G02630//AT3G01740//ADT2//AJH2//NRP1//BIO2//UGT74F1//AT1G06790//ADS1//OTC//ATPDI8//AT2G01060//AT1G43580//ALDH5F1//KCS12//ABI5//AT1G12050//CSD1//AT1G24360//AT1G23780//AT2G16800//HY3//AT2G35120
GO:0019752	carboxylic acid metabolic process	BP	0.00018682374241064	FdC1//AT-P5C1//PSL4//AT5G55450//AT5G51140//PFK2//ATCBP20//ATUK/UPRT1//GDH1//AT5G17760//GLN1;4//VAT1//TUB6//CBSX3//14-3-3lambda//ATGA20OX3//SNRK2-2//AT3G50850//SHL1//IDH-III//XLG2//AT4G33740//AT4G31180//AT4G24750//ATSR//IBR1//LIF2//PSP//EMB1303//AT3G14860//AT3G29185//bHLH121//AT3G16200//ATCNGC20//BUL1//AT3G02630//AT3G01740//ADT2//AJH2//NRP1//BIO2//UGT74F1//AT1G06790//ADS1//OTC//ATPDI8//AT2G01060//AT1G43580//ALDH5F1//KCS12//ABI5//AT1G12050//CSD1//AT1G24360//AT1G23780//AT2G16800//HY3//AT2G35120
GO:0010029	regulation of seed germination	BP	0.000242501834612482	AHP3//AT5G06550//SNRK2-2//ARR10//ABI5//ARR14//HY3
GO:0009086	methionine biosynthetic process	BP	0.000245840477800208	PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//AT4G33740//AT3G14860//AT3G16200//AT3G01740//ATPDI8//AT1G43580//AT2G16800
GO:0006555	methionine metabolic process	BP	0.000307419067076915	PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//AT4G33740//AT3G14860//AT3G16200//AT3G01740//ATPDI8//AT1G43580//AT2G16800
GO:1900140	regulation of seedling development	BP	0.000356676067786135	AHP3//AT5G06550//SNRK2-2//ARR10//ABI5//ARR14//HY3
GO:0009066	aspartate family amino acid metabolic pr...	BP	0.000363730779557198	AT-P5C1//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//AT4G33740//AT3G14860//AT3G16200//AT3G01740//ATPDI8//AT1G43580//AT2G16800
GO:0009067	aspartate family amino acid biosynthetic...	BP	0.000520370598327556	PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//AT4G33740//AT3G14860//AT3G16200//AT3G01740//ATPDI8//AT1G43580//AT2G16800
GO:0007623	circadian rhythm	BP	0.000926325679335106	AT5G62720//BBX8//AT5G14550//AGL25//AT3G51400//AT4G33980//AT4G26670//EPR1//AT2G21130//AtPIF4//HY3
GO:0048511	rhythmic process	BP	0.000926325679335106	AT5G62720//BBX8//AT5G14550//AGL25//AT3G51400//AT4G33980//AT4G26670//EPR1//AT2G21130//AtPIF4//HY3
GO:0008380	RNA splicing	BP	0.0010402157376975	PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//U1-70K//AT4G33740//AT1G07170//AT3G14860//AT3G16200//U11/U12-31K//AT3G01740//ATPDI8//At-SR34//AT1G43580//AT1G54380//AT2G16800//AT-RS2Z33
GO:0000394	RNA splicing, via endonucleolytic cleava...	BP	0.00339818373881245	PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//AT4G33740//AT3G14860//AT3G16200//AT3G01740//ATPDI8//AT1G43580//AT2G16800
GO:0006767	water-soluble vitamin metabolic process	BP	0.00361679573175541	ATPDX2//AJH2//BIO2//ATSIRB//KPHMT1
GO:0042364	water-soluble vitamin biosynthetic proce...	BP	0.00361679573175541	ATPDX2//AJH2//BIO2//ATSIRB//KPHMT1
GO:0044281	small molecule metabolic process	BP	0.00383267787666376	NAD4//FdC1//AT-P5C1//ATPDX2//CYP81F2//PSL4//AT5G55450//AT5G51140//PFK2//ATCBP20//ATUK/UPRT1//GDH1//AT5G17760//GLN1;4//VAT1//TUB6//CBSX3//14-3-3lambda//ATGA20OX3//SNRK2-2//AT3G50850//PEX11B//SHL1//IDH-III//XLG2//AT4G33740//AT4G31180//AT4G24750//ATSR//IBR1//AOP//LIF2//AT4G00560//PSP//EMB1303//AT3G14860//AT3G29185//ETR2//bHLH121//AT3G16200//ATCNGC20//BUL1//AT3G02630//ATPRMT4B//AT3G01740//ADT2//ATY1//AJH2//NRP1//PPR596//BIO2//UGT74F1//AT1G06790//ADS1//OTC//ATPDI8//AT2G01060//ATSIRB//ATPWP2//AT1G43580//ALDH5F1//KCS12//ABI5//AT2G35880//AT1G12050//CSD1//AT1G24360//AT1G23780//AT2G16800//HY3//AT2G35120//KPHMT1//BAS1
GO:1901605	alpha-amino acid metabolic process	BP	0.00535429601291294	AT-P5C1//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//GLN1;4//VAT1//TUB6//AT4G33740//ATSR//PSP//AT3G14860//AT3G16200//AT3G01740//ADT2//ATPDI8//AT1G43580//ALDH5F1//AT1G12050//AT2G16800//AT2G35120
GO:0009110	vitamin biosynthetic process	BP	0.00579699793244543	ATPDX2//AJH2//BIO2//ATSIRB//KPHMT1
GO:0006520	cellular amino acid metabolic process	BP	0.00601889956890204	AT-P5C1//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//GDH1//GLN1;4//VAT1//TUB6//AT4G33740//AT4G31180//ATSR//PSP//AT3G14860//AT3G16200//AT3G01740//ADT2//UGT74F1//OTC//ATPDI8//AT1G43580//ALDH5F1//AT1G12050//AT2G16800//AT2G35120
GO:0009736	cytokinin-activated signaling pathway	BP	0.00632531699680382	ATAUX2-11//AHP3//ARR10//AT1G34010//AT3G23190//ARR14
GO:0071368	cellular response to cytokinin stimulus	BP	0.00708732218584712	ATAUX2-11//AHP3//ARR10//AT1G34010//AT3G23190//ARR14
GO:0040029	regulation of gene expression, epigeneti...	BP	0.00748648257108372	ADA2B//ELF9//AT5G56940//ATCBP20//SDG18//ATTIF3K1//AT3G51280//U1-70K//DMS3//AT4G39860//ATK1//BSH//DML2//NRPD1//ATOGG1//ATVLN1//AT1G70180//CSD1//POLD2
GO:0051258	protein polymerization	BP	0.00753081834970637	LRP1//ATAUX2-11//ABIL4//TUB6//AT3G02630//AtCPA//BIO2//ATVLN1//NCRK//ATEXP6//POLD2
GO:0032259	methylation	BP	0.00873066186618919	SDG18//AT5G06550//AT3G58470//AT3G51280//DMS3//AT4G39860//ATK1//APUM24//ATPRMT4B//AT3G09500//DML2//AT3G04920//AT3G03920//AJH2//NRPD1//ATOGG1//ATPWP2//EDA27//ATVLN1//RPL16A//AT1G27400//AT2G32060//POLD2
GO:0006396	RNA processing	BP	0.00941555780102401	ADA2B//AT5G27700//AT5G56940//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//ATTIF3K1//U1-70K//DMS3//AT4G33740//AT1G07170//AT3G14860//AT3G16200//U11/U12-31K//AT3G01740//NRPD1//GIF2//ATPDI8//At-SR34//AT1G43580//AT1G54380//AT2G16800//AT-RS2Z33
GO:0031048	chromatin silencing by small RNA	BP	0.0105249757860169	SDG18//ATTIF3K1//ATK1//NRPD1//ATVLN1//AT1G70180//POLD2
GO:0072329	monocarboxylic acid catabolic process	BP	0.0119652907399204	ATGA20OX3//AT3G50850//SHL1//LIF2//EMB1303//bHLH121//AT1G06790//AT2G01060//ALDH5F1//AT1G12050//AT1G23780
GO:0017038	protein import	BP	0.0120218546342998	AT5G09840//APC8//AT4G40000//SHL1//AT4G02820//LIF2//EMB1303//APUM24//bHLH121//AT3G03920//PPR596//AT2G01060//ATPWP2//AT1G23780
GO:0006325	chromatin organization	BP	0.0123843118405424	ADA2B//ELF9//HTR11//SDG18//AT5G06550//AT3G56120//AT3G51280//DMS3//AT4G39860//SHL1//ATK1//BSH//ATPRMT4B//MCC1//AT3G03920//AJH2//NRP1//NRPD1//ALDH5F1//ATVLN1//HY3//POLD2
GO:0035194	posttranscriptional gene silencing by RN...	BP	0.0126358456228785	ADA2B//ELF9//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//NRPD1//ATVLN1//CSD1
GO:1901607	alpha-amino acid biosynthetic process	BP	0.0126454492955816	AT-P5C1//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//GLN1;4//TUB6//AT4G33740//PSP//AT3G14860//AT3G16200//AT3G01740//ADT2//ATPDI8//AT1G43580//AT2G16800
GO:1901564	organonitrogen compound metabolic proces...	BP	0.0133973255141944	NAD4//FdC1//AT-P5C1//AT5G65480//ATPDX2//CYP81F2//ATCKX3//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//GDH1//GLN1;4//VAT1//TUB6//ATCKX6//PEX11B//AT4G33740//ARR10//AT4G31180//ATSR//IBR1//PSP//EMB1303//AT3G14860//AT3G16200//ATPRMT4B//AT3G01740//ADT2//AT1G28100//PPR596//BIO2//UGT74F1//OTC//ATPDI8//ATSIRB//ATPWP2//AT1G43580//ALDH5F1//AT1G12050//AT2G16800//AT2G35120//KPHMT1
GO:0000398	mRNA splicing, via spliceosome	BP	0.013483909817391	ATCBP20//U1-70K//AT1G07170//U11/U12-31K//At-SR34//AT1G54380//AT-RS2Z33
GO:0043414	macromolecule methylation	BP	0.0136267371350999	SDG18//AT5G06550//AT3G51280//DMS3//AT4G39860//ATK1//APUM24//ATPRMT4B//AT3G09500//DML2//AT3G04920//AT3G03920//AJH2//NRPD1//ATOGG1//ATPWP2//EDA27//ATVLN1//RPL16A//AT1G27400//AT2G32060//POLD2
GO:0032787	monocarboxylic acid metabolic process	BP	0.0139784335469731	FdC1//AT5G55450//AT5G51140//PFK2//AT5G17760//TUB6//CBSX3//14-3-3lambda//ATGA20OX3//SNRK2-2//AT3G50850//SHL1//XLG2//AT4G31180//AT4G24750//LIF2//EMB1303//AT3G29185//bHLH121//ATCNGC20//BUL1//AT3G02630//NRP1//BIO2//UGT74F1//AT1G06790//ADS1//AT2G01060//ALDH5F1//KCS12//AT1G12050//CSD1//AT1G24360//AT1G23780//HY3
GO:0007031	peroxisome organization	BP	0.0140068514464722	PEX11B//SHL1//LIF2//EMB1303//bHLH121//PEX11C//AT2G01060//AT1G23780
GO:0009733	response to auxin	BP	0.0140766446061566	LRP1//ADA2B//ATAUX2-11//SAUR23//XLG2//AT4G26400//IBR1//SAUR27//AT1G29500//AJH2//AT1G49010//BDL//AtPIF4//AT2G18010//BAS1
GO:0046364	monosaccharide biosynthetic process	BP	0.014774618263973	ATUK/UPRT1//VAT1//TUB6//14-3-3lambda//AT4G31180//ATSUMO1//AJH2//NRP1//CSD1
GO:0006096	glycolytic process	BP	0.0157087510870028	PFK2//TUB6//CBSX3//14-3-3lambda//SNRK2-2//SHL1//AT4G31180//NRP1//CSD1
GO:0009735	response to cytokinin	BP	0.0157610903005176	ADA2B//ATAUX2-11//AHP3//ARR10//AT1G34010//AT3G23190//ARR14
GO:0006766	vitamin metabolic process	BP	0.0158093410427293	ATPDX2//AJH2//BIO2//ATSIRB//KPHMT1
GO:0045892	negative regulation of transcription, DN...	BP	0.0160060886272665	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0051253	negative regulation of RNA metabolic pro...	BP	0.0160060886272665	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:1902679	negative regulation of RNA biosynthetic ...	BP	0.0160060886272665	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:1903507	negative regulation of nucleic acid-temp...	BP	0.0160060886272665	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0048580	regulation of post-embryonic development	BP	0.0163791968596662	ELF9//SDG18//AHP3//AGL25//AT5G06550//AT3G56120//SNRK2-2//ARR10//ATK1//AG//ATPRMT4B//AT3G03920//AJH2//ABI5//AtGRF3//ARR14//HY3//POLD2
GO:0016441	posttranscriptional gene silencing	BP	0.0164259056448158	ADA2B//ELF9//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//NRPD1//ATVLN1//CSD1
GO:0018205	peptidyl-lysine modification	BP	0.0177307772037865	AT5G27700//SDG18//AT3G51280//DMS3//AT4G39860//ATSUMO1//ATK1//ATPRMT4B//MCC1//AT3G03920//NRPD1//ATVLN1//AT2G28200//POLD2
GO:0010629	negative regulation of gene expression	BP	0.0179961795082674	ADA2B//AT1G56610//ELF9//AT5G58800//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//AT4G39860//AT4G27270//ATK1//ATPRMT4B//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//CSD1//POLD2
GO:0000375	RNA splicing, via transesterification re...	BP	0.0182987498090203	ATCBP20//U1-70K//AT1G07170//U11/U12-31K//At-SR34//AT1G54380//AT-RS2Z33
GO:0000377	RNA splicing, via transesterification re...	BP	0.0182987498090203	ATCBP20//U1-70K//AT1G07170//U11/U12-31K//At-SR34//AT1G54380//AT-RS2Z33
GO:0016053	organic acid biosynthetic process	BP	0.0188905665534757	AT-P5C1//PSL4//AT5G55450//AT5G51140//ATCBP20//ATUK/UPRT1//AT5G17760//GLN1;4//VAT1//TUB6//ATGA20OX3//XLG2//AT4G33740//PSP//AT3G14860//AT3G16200//ATCNGC20//BUL1//AT3G02630//AT3G01740//ADT2//AJH2//BIO2//ADS1//ATPDI8//AT1G43580//KCS12//ABI5//AT1G24360//AT2G16800
GO:0046394	carboxylic acid biosynthetic process	BP	0.0188905665534757	AT-P5C1//PSL4//AT5G55450//AT5G51140//ATCBP20//ATUK/UPRT1//AT5G17760//GLN1;4//VAT1//TUB6//ATGA20OX3//XLG2//AT4G33740//PSP//AT3G14860//AT3G16200//ATCNGC20//BUL1//AT3G02630//AT3G01740//ADT2//AJH2//BIO2//ADS1//ATPDI8//AT1G43580//KCS12//ABI5//AT1G24360//AT2G16800
GO:0046686	response to cadmium ion	BP	0.0193613093195315	FDH//GDH1//TUB6//CBSX3//14-3-3lambda//SNRK2-2//SHL1//AT4G31180//AT4G19880//AT4G08790//NRP1//AT1G49010//EPR1//CSD1//AT2G30710
GO:0031047	gene silencing by RNA	BP	0.0200323484603797	ADA2B//ELF9//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//ATK1//NRPD1//ATVLN1//AT1G70180//CSD1//POLD2
GO:0016246	RNA interference	BP	0.0207115826527482	ADA2B//ELF9//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//NRPD1//ATVLN1
GO:0045934	negative regulation of nucleobase-contai...	BP	0.0207581328234718	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0034504	protein localization to nucleus	BP	0.0210404818805776	AT5G09840//FHL//APC8//AT4G40000//AT4G02820//APUM24//AT3G03920//PPR596//ATPWP2
GO:0008652	cellular amino acid biosynthetic process	BP	0.0212035925273017	AT-P5C1//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//GLN1;4//VAT1//TUB6//AT4G33740//PSP//AT3G14860//AT3G16200//AT3G01740//ADT2//ATPDI8//AT1G43580//AT2G16800
GO:0010558	negative regulation of macromolecule bio...	BP	0.0215164348800901	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0051172	negative regulation of nitrogen compound...	BP	0.0215164348800901	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:2000113	negative regulation of cellular macromol...	BP	0.0215164348800901	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0045454	cell redox homeostasis	BP	0.022027019302499	CBSX3//AT3G62950//AtGRXS17//ATY1//ATPDI8//AT2G47880
GO:0043933	macromolecular complex subunit organizat...	BP	0.0221010401505498	LRP1//ADA2B//ELF9//HTR11//SDG18//ATAUX2-11//ABIL4//TUB6//AT5G06550//ASK13//AT3G56120//AT3G51280//DMS3//AT4G39860//SHL1//HCF153//ATK1//AT1G33340//BSH//AT3G02630//ATPRMT4B//MCC1//AtCPA//AT3G03920//AJH2//NRP1//BIO2//NRPD1//ALDH5F1//AT1G54380//ATVLN1//NCRK//AT-RS2Z33//HY3//ATEXP6//WLIM2a//POLD2
GO:0006346	methylation-dependent chromatin silencin...	BP	0.0226233967880496	ADA2B//ELF9//SDG18//ATK1//NRPD1//ATVLN1//POLD2
GO:0006342	chromatin silencing	BP	0.0230845338744698	ADA2B//ELF9//SDG18//ATTIF3K1//DMS3//AT4G39860//ATK1//NRPD1//ATVLN1//AT1G70180//POLD2
GO:0045814	negative regulation of gene expression, ...	BP	0.0230845338744698	ADA2B//ELF9//SDG18//ATTIF3K1//DMS3//AT4G39860//ATK1//NRPD1//ATVLN1//AT1G70180//POLD2
GO:0016458	gene silencing	BP	0.0239179401500038	ADA2B//ELF9//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//AT4G39860//ATK1//ATPRMT4B//NRPD1//ATVLN1//AT1G70180//CSD1//POLD2
GO:0031327	negative regulation of cellular biosynth...	BP	0.0247617564319167	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0006090	pyruvate metabolic process	BP	0.0249125211793844	FdC1//PFK2//TUB6//CBSX3//14-3-3lambda//SNRK2-2//SHL1//AT4G31180//AT4G24750//AT3G29185//NRP1//CSD1
GO:0016571	histone methylation	BP	0.0249125211793844	SDG18//AT5G06550//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//AT3G03920//AJH2//NRPD1//ATVLN1//POLD2
GO:0018193	peptidyl-amino acid modification	BP	0.0260375287153323	AT5G27700//SDG18//AT5G06550//AT3G51280//DMS3//AT4G39860//ATSUMO1//ATK1//ATPRMT4B//MCC1//AT3G03920//NRPD1//ATVLN1//AT2G28200//POLD2
GO:0000097	sulfur amino acid biosynthetic process	BP	0.027102142342305	PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//TUB6//AT4G33740//AT3G14860//AT3G16200//AT3G01740//ATPDI8//AT1G43580//AT2G16800
GO:0016568	chromatin modification	BP	0.0276637903481696	ADA2B//ELF9//SDG18//AT5G06550//AT3G56120//AT3G51280//DMS3//AT4G39860//ATK1//BSH//ATPRMT4B//MCC1//AT3G03920//AJH2//NRPD1//ATVLN1//POLD2
GO:0006094	gluconeogenesis	BP	0.0280253521224194	ATUK/UPRT1//VAT1//TUB6//14-3-3lambda//AT4G31180//ATSUMO1//NRP1//CSD1
GO:0019319	hexose biosynthetic process	BP	0.0280253521224194	ATUK/UPRT1//VAT1//TUB6//14-3-3lambda//AT4G31180//ATSUMO1//NRP1//CSD1
GO:0009890	negative regulation of biosynthetic proc...	BP	0.0283623981730273	ADA2B//AT1G56610//ELF9//AT5G58800//SDG18//ATTIF3K1//DMS3//AT4G39860//AT4G27270//ATK1//MCC1//NRPD1//ATVLN1//BDL//AT1G70180//POLD2
GO:0016569	covalent chromatin modification	BP	0.0283623981730273	ADA2B//ELF9//SDG18//AT5G06550//AT3G56120//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//MCC1//AT3G03920//AJH2//NRPD1//ATVLN1//POLD2
GO:0022613	ribonucleoprotein complex biogenesis	BP	0.0295385429130969	FdC1//AT5G27700//AT5G56940//AT4G24750//AT3G09500//AT3G04920//AT3G03920//ATPWP2//AT1G15250//AT1G54380//EDA27//AT1G60230//AT-RS2Z33
GO:0006631	fatty acid metabolic process	BP	0.0299577334346269	AT5G51140//ATGA20OX3//AT3G50850//SHL1//LIF2//EMB1303//bHLH121//BUL1//AT3G02630//AT1G06790//ADS1//AT2G01060//KCS12//AT1G24360//AT1G23780
GO:0010605	negative regulation of macromolecule met...	BP	0.0306060375960326	ADA2B//AT1G56610//ELF9//AT5G58800//AT5G56940//ATCBP20//SDG18//ATTIF3K1//U1-70K//DMS3//AT4G39860//AT4G27270//ATK1//ATPRMT4B//MCC1//NRPD1//ATVLN1//CKS2//BDL//AT1G70180//CSD1//POLD2
GO:0034968	histone lysine methylation	BP	0.0306348289438955	SDG18//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//AT3G03920//NRPD1//ATVLN1//POLD2
GO:0006479	protein methylation	BP	0.0306447672803187	SDG18//AT5G06550//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//AT3G03920//AJH2//NRPD1//ATVLN1//POLD2
GO:0008213	protein alkylation	BP	0.0306447672803187	SDG18//AT5G06550//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//AT3G03920//AJH2//NRPD1//ATVLN1//POLD2
GO:0051567	histone H3-K9 methylation	BP	0.0313494460357916	SDG18//AT3G51280//DMS3//AT4G39860//ATK1//NRPD1//ATVLN1//POLD2
GO:0061647	histone H3-K9 modification	BP	0.0313494460357916	SDG18//AT3G51280//DMS3//AT4G39860//ATK1//NRPD1//ATVLN1//POLD2
GO:0018022	peptidyl-lysine methylation	BP	0.0320765143734447	SDG18//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//AT3G03920//NRPD1//ATVLN1//POLD2
GO:0006305	DNA alkylation	BP	0.032103261081605	SDG18//AT3G51280//DMS3//ATK1//DML2//NRPD1//ATOGG1//ATVLN1//POLD2
GO:0006306	DNA methylation	BP	0.032103261081605	SDG18//AT3G51280//DMS3//ATK1//DML2//NRPD1//ATOGG1//ATVLN1//POLD2
GO:0016570	histone modification	BP	0.0326831537630685	SDG18//AT5G06550//AT3G56120//AT3G51280//DMS3//AT4G39860//ATK1//ATPRMT4B//MCC1//AT3G03920//AJH2//NRPD1//ATVLN1//POLD2
GO:0006997	nucleus organization	BP	0.0335070837036309	AT4G39860//AT4G31180//AtGRXS17//AT1G54380//EDA27
GO:2000026	regulation of multicellular organismal d...	BP	0.0340603134866684	ELF9//SDG18//AHP3//AGL25//AT5G06550//AT3G56120//SNRK2-2//XLG2//ARR10//ATK1//AG//ATPRMT4B//AT3G03920//AJH2//ATL8//BIO2//ABI5//AtGRF3//LAX2//AT2G19970//ARR14//HY3//POLD2
GO:0044710	single-organism metabolic process	BP	0.0346843104481697	NAD4//FdC1//AT4G17370//ACL5//AT-P5C1//FDH//AT5G65480//AT5G62930//CYP89A3//ATPDX2//AT5G60010//AT5G56940//CYP81F2//ATCKX3//PSL4//AT5G56520//AT5G55450//AtIAMT1//AT5G54980//AT5G51140//PFK2//ATCBP20//SDG18//ATUK/UPRT1//AT5G39940//AHP3//GDH1//AT5G17760//GLN1;4//VAT1//TUB6//CBSX3//14-3-3lambda//ATGA20OX3//AT5G06550//AT5G06480//ATCKX6//ATTIF3K1//ASK13//AT3G56120//DGAT2//AT3G51280//SNRK2-2//U1-70K//AT3G50850//AT3G50210//DMS3//APC8//PEX11B//ATSUS4//AT4G39860//SHL1//AT4G38690//AT4G35530//IDH-III//XLG2//AT4G33740//ARR10//HCF153//AT4G31180//AT4G30500//AT4G27120//ATSUMO1//AT4G24750//ATK1//ATSR//IBR1//AOP//LIF2//AT4G00560//PSP//EMB1303//AT1G33430//AT3G14860//AT3G28670//AT3G15570//AT3G29185//ETR2//bHLH121//AT3G16200//AT3G17940//ATCNGC20//ATLPP3//BUL1//AT3G02630//AT3G07000//ATPRMT4B//MCC1//DML2//AT3G01740//ADT2//AT3G03920//AT1G28100//ATY1//AJH2//NRP1//PPR596//BIO2//UGT74F1//AT1G06790//ADS1//NRPD1//OTC//AT1G19600//CYP705A25//ATPLMT//ATPDI8//AT2G01060//ATSIRB//ATOGG1//ATPWP2//AT1G43580//ALDH5F1//KCS12//ATVLN1//AT2G40420//ABI5//AT2G35880//CKS2//BGLU46//AT1G12050//AT1G70180//CSD1//AT1G03520//AT1G24360//AT1G23780//AtPIF4//AT2G16800//FEI2//ARR14//HY3//AT2G35120//KPHMT1//ATLAC2//WLIM2a//BAS1//POLD2
GO:0008283	cell proliferation	BP	0.0351018281611834	ADA2B//SDG18//AT3G51280//AT4G39860//SOL1//NRP1//GIF2//AT1G14180//ATVLN1//POLD2
GO:0044728	DNA methylation or demethylation	BP	0.0354013707264699	SDG18//AT3G51280//DMS3//ATK1//DML2//NRPD1//ATOGG1//ATVLN1//POLD2
GO:0065008	regulation of biological quality	BP	0.0360149394241048	LRP1//ACL5//ATCAX3//ATCKX3//ABIL4//ATUK/UPRT1//TUB6//CBSX3//FHL//ATCKX6//AT3G62950//ATTIF3K1//DMS3//IBR1//AtGRXS17//AT3G14860//CCL//BUL1//AtCPA//ATY1//BIO2//NRPD1//ATPDI8//ATVLN1//ABI5//PIN6//AtPIF4//AT2G16800//NCRK//FEI2//HY3//AT2G47880//WLIM2a//BAS1
GO:0009651	response to salt stress	BP	0.0362625792872477	AT-P5C1//SNRK2-5//GDH1//TUB6//CBSX3//14-3-3lambda//ASK2//ATBZIP24//SNRK2-2//SHL1//XLG2//AT4G31180//AT4G26400//ABF4//NRP1//AT1G49010//EPR1//ABI5//CSD1//ATEXP6
GO:0031537	regulation of anthocyanin metabolic proc...	BP	0.0366239499222379	AHP3//ARR10//ARR14
GO:0006304	DNA modification	BP	0.0371347533162047	SDG18//AT3G51280//DMS3//ATK1//DML2//NRPD1//ATOGG1//ATVLN1//POLD2
GO:1901566	organonitrogen compound biosynthetic pro...	BP	0.0382614239903006	FdC1//AT-P5C1//ATPDX2//CYP81F2//PSL4//AT5G51140//ATCBP20//ATUK/UPRT1//GLN1;4//VAT1//TUB6//AT4G33740//ARR10//PSP//AT3G14860//AT3G16200//ATPRMT4B//AT3G01740//ADT2//AT1G28100//PPR596//BIO2//OTC//ATPDI8//ATSIRB//ATPWP2//AT1G43580//AT2G16800//KPHMT1