GOID TERM ONTOLOGY pValue Genes GO:0016192 vesicle-mediated transport BP 0.00502819842668276 ATPDI2//ATEXO70A3//AT5G05010//AT4G11380//AT4G09930//AT3G16270//ATTIM23-1//AT1G45000//ATSYP111//ATVPS34//ATI1 GO:0006066 alcohol metabolic process BP 0.0113751808337935 ATKCR1//AHL1//AT4G10750//ATFAO3//SBH2//AT1G78040//FLA6//ATSYP111//ATVPS34//BAS1 GO:0006113 fermentation BP 0.0131478691896969 AT4G10750//AT1G78040 GO:0006665 sphingolipid metabolic process BP 0.0136279850488997 ATKCR1//SBH2//AT1G33700 GO:0030244 cellulose biosynthetic process BP 0.0136982552305955 ATPDI2//RGP5//AT4G11380//AT1G45000 GO:1901575 organic substance catabolic process BP 0.0146698833057451 ALDH12A1//FTSH11//RGP5//CYC2BAT//UPL4//UBC14//AT4G30010//AT4G28440//AT4G26390//AT4G10750//ABCE1//AT3G14100//UBP7//AT1G15710//AT1G45000//AT1G33700//AT1G78040//ACD1//AtCaN2//ATVPS34//ACR3//AT2G38920 GO:0046174 polyol catabolic process BP 0.015610178937775 AT1G78040//ATVPS34 GO:0051274 beta-glucan biosynthetic process BP 0.0172176524831938 ATPDI2//RGP5//AT4G11380//AT1G45000 GO:0009616 virus induced gene silencing BP 0.0191702768987129 TDP1//SMC6A//AT4G32620//RDR2 GO:0052018 modulation by symbiont of RNA levels in ... BP 0.0191702768987129 TDP1//SMC6A//AT4G32620//RDR2 GO:0052249 modulation of RNA levels in other organi... BP 0.0191702768987129 TDP1//SMC6A//AT4G32620//RDR2 GO:0098586 cellular response to virus BP 0.0201958873991691 TDP1//SMC6A//AT4G32620//RDR2 GO:0009640 photomorphogenesis BP 0.0207283312388862 COP9//AT5G27750//PAT1//SBH2//ATAMPD//AtAUR3 GO:0046164 alcohol catabolic process BP 0.0210700938835442 AT1G78040//ATVPS34 GO:0046434 organophosphate catabolic process BP 0.0210700938835442 AT1G78040//ATVPS34 GO:0035821 modification of morphology or physiology... BP 0.0212547233426526 TDP1//SMC6A//AT4G32620//RDR2 GO:0044003 modification by symbiont of host morphol... BP 0.0212547233426526 TDP1//SMC6A//AT4G32620//RDR2 GO:0051817 modification of morphology or physiology... BP 0.0212547233426526 TDP1//SMC6A//AT4G32620//RDR2 GO:0006633 fatty acid biosynthetic process BP 0.0234873828469607 ATKCR1//AT5G10160//LACS9//SBH2//AtFAD3 GO:0070646 protein modification by small protein re... BP 0.0234873828469607 COP9//ATESD4//AT5G27750//ATVPS34//AtAUR3 GO:0006083 acetate metabolic process BP 0.0240549400856624 AT4G10750//AT1G78040 GO:0051701 interaction with host BP 0.0283181741228017 TDP1//SMC6A//AT4G32620//RDR2 GO:1901616 organic hydroxy compound catabolic proce... BP 0.0305036942724903 AT1G78040//ATVPS34 GO:0044282 small molecule catabolic process BP 0.0307082052147641 ALDH12A1//ABCE1//AT1G15710//AT1G78040//ACD1//ATVPS34//ACR3//AT2G38920 GO:0006007 glucose catabolic process BP 0.0337166498506629 RGP5//AT4G10750//AT3G14100//AT1G78040 GO:0046520 sphingoid biosynthetic process BP 0.0339557744725949 ATKCR1//SBH2 GO:0019320 hexose catabolic process BP 0.0351536143524053 RGP5//AT4G10750//AT3G14100//AT1G78040 GO:0044403 symbiosis, encompassing mutualism throug... BP 0.0351536143524053 TDP1//SMC6A//AT4G32620//RDR2 GO:0006487 protein N-linked glycosylation BP 0.0364976185891558 AT5G18525//ABCA1//ATVPS34 GO:0044419 interspecies interaction between organis... BP 0.0366256726373569 TDP1//SMC6A//AT4G32620//RDR2 GO:0046365 monosaccharide catabolic process BP 0.0366256726373569 RGP5//AT4G10750//AT3G14100//AT1G78040 GO:0048193 Golgi vesicle transport BP 0.0367642067325914 ATPDI2//AT4G11380//AT3G16270//ATTIM23-1//AT1G45000//ATI1 GO:0046519 sphingoid metabolic process BP 0.0375520185679591 ATKCR1//SBH2 GO:0009056 catabolic process BP 0.0380301052687882 ALDH12A1//FTSH11//RGP5//CYC2BAT//UPL4//UBC14//AT4G30010//AT4G28440//AT4G26390//AT4G10750//ABCE1//AT3G14100//UBP7//AT1G15710//AT1G45000//AT1G33700//AT1G78040//ACD1//AtCaN2//ATVPS34//ACR3//AT2G38920//ATI1 GO:0046364 monosaccharide biosynthetic process BP 0.0447118835805944 AT4G26390//AT4G10750//AT1G78040//ACD1//AtkdsA1 GO:0006897 endocytosis BP 0.0451549462742369 AT4G09930//ATVPS34 GO:0030148 sphingolipid biosynthetic process BP 0.0451549462742369 ATKCR1//SBH2 GO:0005975 carbohydrate metabolic process BP 0.0487816769958904 ATESD4//BAM1//ATPDI2//AtXTH12//AT5G18525//RGP5//XCP1//AT4G32120//AT4G30010//AT4G26390//AT4G11380//AT4G10750//GUX4//AT3G14100//BGLU23//ATCEL3//AT1G63290//ABCA1//AT1G45000//AT1G78060//AT1G78040//ACD1//AtkdsA1//ATVPS34 GO:1902589 single-organism organelle organization BP 0.0493033327278148 AT5G27750//BAM1//ARAC10//ATFH5//SMC6A//AT4G26660//RDR2//AT1G75150//MER3//AT3G09730//AT1G20410//ATTIM23-1//ATXIC//ATSYP111//ATAMPD//AtAUR3 GO:0010564 regulation of cell cycle process BP 0.0496683995051304 CYC2BAT//ANAC008//MER3//ATAMPD GO:0008202 steroid metabolic process BP 0.050136585733172 ATKCR1//AHL1//SBH2//FLA6//ATSYP111//BAS1 GO:0006631 fatty acid metabolic process BP 0.0501675782278631 ATKCR1//AT5G10160//ABCE1//LACS9//SBH2//AT2G38920//AtFAD3 GO:0015980 energy derivation by oxidation of organi... BP 0.0532800915479665 OLD5//AT4G30010//AT4G10750//AT1G78040 GO:0030243 cellulose metabolic process BP 0.0532800915479665 ATPDI2//RGP5//AT4G11380//AT1G45000 GO:0030163 protein catabolic process BP 0.0536469060230886 FTSH11//CYC2BAT//UPL4//UBC14//AT4G30010//AT4G28440//AT4G26390//UBP7//AT1G45000 GO:0010073 meristem maintenance BP 0.0538911831026834 ATESD4//BAM1//PLA//RDR2//LBD4//AT1G78060 GO:0051645 Golgi localization BP 0.0575063675405225 AT4G22720//ATXIC GO:0051646 mitochondrion localization BP 0.0575063675405225 AT4G22720//ATXIC GO:0060151 peroxisome localization BP 0.0575063675405225 AT4G22720//ATXIC GO:0051273 beta-glucan metabolic process BP 0.060920663868731 ATPDI2//RGP5//AT4G11380//AT1G45000 GO:0031325 positive regulation of cellular metaboli... BP 0.0621466385978563 BZIP17//AT5G27750//OLD5//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:0044724 single-organism carbohydrate catabolic p... BP 0.0641517167015511 RGP5//AT4G30010//AT4G26390//AT4G10750//AT3G14100//AT1G78040//ACD1 GO:0044767 single-organism developmental process BP 0.0645073082349724 ATKCR1//COP9//ATESD4//ATDI21//AT5G27750//BAM1//AtXTH12//emb2731//ATFH5//PAT1//TDP1//CYC2BAT//SMC6A//NAKR1//PLA//AGL13//LAP3//ATCLC-E//XCP1//AT4G32620//AT4G26660//ATCIPK8//AT4G13230//RDR2//ANAC008//ANAC015//AT3G19020//LBD4//AT3G09730//AT3G16270//AT1G20410//AT1G63210//ATLOX4//ABCG13//SBH2//AT1G01640//AT1G78060//AtkdsA1//ZFP5//FLA6//ATVPS34//ATI1//ATAMPD//AtAUR3 GO:0051607 defense response to virus BP 0.064947562392088 TDP1//SMC6A//AT4G32620//RDR2 GO:0016579 protein deubiquitination BP 0.0663136016902049 AT5G27750//AtAUR3 GO:0044248 cellular catabolic process BP 0.0663864480536085 ALDH12A1//FTSH11//CYC2BAT//UPL4//UBC14//AT4G30010//AT4G28440//AT4G26390//ABCE1//UBP7//AT1G15710//AT1G33700//AT1G78040//ACD1//AtCaN2//ACR3//AT2G38920//ATI1 GO:0070647 protein modification by small protein co... BP 0.0679841955335151 COP9//ATESD4//AT5G27750//UPL4//ATVPS34//ATAMPD//AtAUR3 GO:0051726 regulation of cell cycle BP 0.0690888603036634 CYC2BAT//AT4G26660//ANAC008//AT1G75150//MER3//ATAMPD GO:0051301 cell division BP 0.0706143881853856 CYC2BAT//AT4G26660//ANAC008//MER3//ATSYP111//ATAMPD//AtAUR3 GO:0006006 glucose metabolic process BP 0.0736247824601824 RGP5//AT4G26390//AT4G10750//AT3G14100//AT1G78040//ACD1 GO:0048509 regulation of meristem development BP 0.0746276032361669 BAM1//PLA//LBD4//AT1G78060//ZFP5 GO:1901136 carbohydrate derivative catabolic proces... BP 0.0755351464399622 AT1G33700//AT1G78040 GO:0006096 glycolytic process BP 0.0782851203467126 AT4G30010//AT4G26390//AT4G10750//AT1G78040//ACD1 GO:0006626 protein targeting to mitochondrion BP 0.0798817030751407 COP9//AT4G22720//ATTIM23-1 GO:0070585 protein localization to mitochondrion BP 0.0798817030751407 COP9//AT4G22720//ATTIM23-1 GO:0072655 establishment of protein localization to... BP 0.0798817030751407 COP9//AT4G22720//ATTIM23-1 GO:1901615 organic hydroxy compound metabolic proce... BP 0.0803071409076681 ATKCR1//AHL1//AT4G10750//ATFAO3//SBH2//AT1G78040//FLA6//ATSYP111//ATVPS34//ACR3//BAS1 GO:0007275 multicellular organismal development BP 0.0812314275559338 ATKCR1//COP9//ATESD4//ATDI21//AT5G27750//BAM1//AtXTH12//emb2731//ATFH5//PAT1//TDP1//CYC2BAT//SMC6A//NAKR1//PLA//AGL13//LAP3//ATCLC-E//AT4G32620//AT4G26660//ATCIPK8//AT4G13230//RDR2//ANAC008//ANAC015//LBD4//AT3G09730//AT1G20410//AT1G63210//ATLOX4//ABCG13//SBH2//AT1G01640//AT1G78060//ZFP5//FLA6//ATVPS34//ATAMPD//AtAUR3 GO:0045893 positive regulation of transcription, DN... BP 0.0817370449460201 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:0051254 positive regulation of RNA metabolic pro... BP 0.0817370449460201 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:1902680 positive regulation of RNA biosynthetic ... BP 0.0817370449460201 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:1903508 positive regulation of nucleic acid-temp... BP 0.0817370449460201 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:0044262 cellular carbohydrate metabolic process BP 0.0845290310682095 ATESD4//ATPDI2//AtXTH12//RGP5//XCP1//AT4G11380//GUX4//AT1G45000//AT1G78040//AtkdsA1//ATVPS34 GO:0006486 protein glycosylation BP 0.0847302208164081 AT5G18525//AT4G32120//ABCA1//ATVPS34 GO:0009101 glycoprotein biosynthetic process BP 0.0847302208164081 AT5G18525//AT4G32120//ABCA1//ATVPS34 GO:0043413 macromolecule glycosylation BP 0.0847302208164081 AT5G18525//AT4G32120//ABCA1//ATVPS34 GO:0051302 regulation of cell division BP 0.0851354203504921 CYC2BAT//ANAC008 GO:0000338 protein deneddylation BP 0.0860019327602633 COP9//AT5G27750//AtAUR3 GO:0010388 cullin deneddylation BP 0.0860019327602633 COP9//AT5G27750//AtAUR3 GO:0019751 polyol metabolic process BP 0.0860019327602633 AT4G10750//AT1G78040//ATVPS34 GO:0032502 developmental process BP 0.0898973197442623 ATKCR1//COP9//ATESD4//ATDI21//AT5G27750//BAM1//AtXTH12//emb2731//ATFH5//PAT1//TDP1//CYC2BAT//SMC6A//NAKR1//PLA//AGL13//LAP3//ATCLC-E//XCP1//AT4G32620//AT4G26660//ATCIPK8//AT4G13230//RDR2//ANAC008//ANAC015//AT3G19020//LBD4//AT3G09730//AT3G16270//AT1G20410//AT1G63210//ATLOX4//ABCG13//SBH2//AT1G01640//AT1G78060//AtkdsA1//ZFP5//FLA6//ATVPS34//ATI1//ATAMPD//AtAUR3 GO:0044707 single-multicellular organism process BP 0.0905996427071373 ATKCR1//COP9//ATESD4//ATDI21//AT5G27750//BAM1//AtXTH12//emb2731//ATFH5//PAT1//TDP1//CYC2BAT//SMC6A//NAKR1//PLA//AGL13//LAP3//ATCLC-E//AT4G32620//AT4G26660//ATCIPK8//AT4G13230//RDR2//ANAC008//ANAC015//LBD4//AT3G09730//AT1G20410//AT1G63210//ATLOX4//ABCG13//SBH2//AT1G01640//AT1G78060//ZFP5//FLA6//ATVPS34//ATAMPD//AtAUR3 GO:0045935 positive regulation of nucleobase-contai... BP 0.0907089205315804 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:0048507 meristem development BP 0.0909975404945717 ATESD4//BAM1//PLA//RDR2//LBD4//AT1G78060//ZFP5//ATAMPD GO:0009651 response to salt stress BP 0.0916036631090769 BZIP17//STT3A//ALDH12A1//AAP6//RGP5//BGLU23//ABCG13//ATCOX6B2//ACD1//ATVPS34 GO:0009100 glycoprotein metabolic process BP 0.0919100870322915 AT5G18525//AT4G32120//ABCA1//ATVPS34 GO:0044712 single-organism catabolic process BP 0.092337670395467 ALDH12A1//RGP5//AT4G30010//AT4G26390//AT4G10750//ABCE1//AT3G14100//AT1G15710//AT1G33700//AT1G78040//ACD1//ATVPS34//ACR3//AT2G38920 GO:0044723 single-organism carbohydrate metabolic p... BP 0.0925778521385769 ATESD4//BAM1//ATPDI2//AT5G18525//RGP5//XCP1//AT4G32120//AT4G30010//AT4G26390//AT4G11380//AT4G10750//AT3G14100//ABCA1//AT1G45000//AT1G78040//ACD1//AtkdsA1//ATVPS34 GO:0051173 positive regulation of nitrogen compound... BP 0.0953957978920205 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:0010267 production of ta-siRNAs involved in RNA ... BP 0.0955422126202537 SMC6A//AT4G32620//RDR2 GO:0044257 cellular protein catabolic process BP 0.0966945800799102 FTSH11//CYC2BAT//UPL4//UBC14//AT4G30010//AT4G28440//AT4G26390//UBP7 GO:0009615 response to virus BP 0.0968532963385329 TDP1//SMC6A//AT4G32620//RDR2 GO:0070085 glycosylation BP 0.0993710162639896 AT5G18525//AT4G32120//ABCA1//ATVPS34 GO:0009834 plant-type secondary cell wall biogenesi... BP 0.100172628604934 ANAC015//AtMYB20 GO:0048582 positive regulation of post-embryonic de... BP 0.100172628604934 ATESD4//CYC2BAT GO:0010628 positive regulation of gene expression BP 0.100215526792313 BZIP17//AT5G27750//GATA3//RDR2//ANAC015//AT2G42860//AtAUR3 GO:0006094 gluconeogenesis BP 0.101919073061449 AT4G26390//AT4G10750//AT1G78040//ACD1 GO:0009057 macromolecule catabolic process BP 0.102805333644981 FTSH11//CYC2BAT//UPL4//UBC14//AT4G30010//AT4G28440//AT4G26390//UBP7//AT1G45000//AtCaN2 GO:0005996 monosaccharide metabolic process BP 0.103501976368749 RGP5//AT4G26390//AT4G10750//AT3G14100//AT1G78040//ACD1//AtkdsA1 GO:0032501 multicellular organismal process BP 0.104005597664401 ATKCR1//COP9//ATESD4//ATDI21//AT5G27750//BAM1//AtXTH12//emb2731//ATFH5//PAT1//TDP1//CYC2BAT//SMC6A//NAKR1//PLA//AGL13//LAP3//ATCLC-E//AT4G32620//AT4G26660//ATCIPK8//AT4G13230//RDR2//ANAC008//ANAC015//AT3G19020//LBD4//AT3G09730//AT1G20410//AT1G63210//ATLOX4//ABCG13//SBH2//AT1G01640//AT1G78060//AtkdsA1//ZFP5//FLA6//ATVPS34//ATAMPD//AtAUR3