GOID TERM ONTOLOGY pValue Genes GO:0006662 glycerol ether metabolic process BP 0.0094282407113258 HCF164//ATF2//WCRKC1 GO:0018904 ether metabolic process BP 0.0094282407113258 HCF164//ATF2//WCRKC1 GO:0009736 cytokinin-activated signaling pathway BP 0.0100917686671657 AT4G11190//AT4G02850//AtETR1//AHP6 GO:0071368 cellular response to cytokinin stimulus BP 0.0108400394598625 AT4G11190//AT4G02850//AtETR1//AHP6 GO:0044242 cellular lipid catabolic process BP 0.0145488650002819 CAT2//ATG8G//AT3G03330//ATGA2OX1//ATPEX2//APG9//AtCYS2 GO:0009699 phenylpropanoid biosynthetic process BP 0.0151159889844586 ATPRR1//CCH//ATCAD7//AT4G11190 GO:0009960 endosperm development BP 0.0154325313739662 ATUBC8//ATWRKY10 GO:0048573 photoperiodism, flowering BP 0.0156938825077253 CAT2//AT1G76460//AT1G73660//AT1G55880//AT1G48550//ABH1 GO:0016042 lipid catabolic process BP 0.0172328391331187 CAT2//ATG8G//AT3G03330//ATGA2OX1//ATPEX2//APG9//AtCYS2 GO:0016054 organic acid catabolic process BP 0.0177167489638868 CAT2//ATG8G//AT3G03330//ATGA2OX1//ATPEX2//AT1G64800//APG9//pEARLI4//AtCYS2 GO:0046395 carboxylic acid catabolic process BP 0.0177167489638868 CAT2//ATG8G//AT3G03330//ATGA2OX1//ATPEX2//AT1G64800//APG9//pEARLI4//AtCYS2 GO:0009648 photoperiodism BP 0.0190066901444443 CAT2//AT1G76460//AT1G73660//AT1G55880//AT1G48550//ABH1 GO:0045454 cell redox homeostasis BP 0.0239244919336516 HCF164//ATF2//WCRKC1//AT2G47880 GO:0009062 fatty acid catabolic process BP 0.0244041660946458 CAT2//ATG8G//AT3G03330//ATPEX2//APG9//AtCYS2 GO:0072329 monocarboxylic acid catabolic process BP 0.0244041660946458 CAT2//ATG8G//AT3G03330//ATPEX2//APG9//AtCYS2 GO:0007346 regulation of mitotic cell cycle BP 0.0278838947634773 AT3G56870//TRM7//ATCDT1A//OTLD1 GO:0009735 response to cytokinin BP 0.0278838947634773 AT4G11190//AT4G02850//AtETR1//AHP6 GO:0019748 secondary metabolic process BP 0.0281158948036303 ATPRR1//HCF164//CCH//ATCAD7//AT4G13840//AT4G11190//AT3G20390//ATGSTU23//BDG1//APG9//ATOFP2 GO:0045892 negative regulation of transcription, DN... BP 0.0282401319071399 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0282401319071399 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0282401319071399 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0288941746609652 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0044550 secondary metabolite biosynthetic proces... BP 0.031471339942345 ATPRR1//HCF164//CCH//ATCAD7//AT4G13840//AT4G11190//AT3G20390 GO:0044282 small molecule catabolic process BP 0.0322109728115546 CAT2//AT5G10540//ATG8G//AT3G03330//ATGA2OX1//ATPEX2//AT1G64800//APG9//pEARLI4//AtCYS2 GO:0010558 negative regulation of macromolecule bio... BP 0.0323246779154356 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0045934 negative regulation of nucleobase-contai... BP 0.0323246779154356 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:2000113 negative regulation of cellular macromol... BP 0.0323246779154356 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0051172 negative regulation of nitrogen compound... BP 0.0345138544475532 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0000086 G2/M transition of mitotic cell cycle BP 0.0355889263193031 AT3G56870//TRM7//ATCDT1A GO:0010389 regulation of G2/M transition of mitotic... BP 0.0355889263193031 AT3G56870//TRM7//ATCDT1A GO:0044839 cell cycle G2/M phase transition BP 0.0355889263193031 AT3G56870//TRM7//ATCDT1A GO:1902749 regulation of cell cycle G2/M phase tran... BP 0.0355889263193031 AT3G56870//TRM7//ATCDT1A GO:0031327 negative regulation of cellular biosynth... BP 0.0375893555376497 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0009890 negative regulation of biosynthetic proc... BP 0.039195404833356 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:1901987 regulation of cell cycle phase transitio... BP 0.0401660115558398 AT3G56870//TRM7//ATCDT1A GO:1901990 regulation of mitotic cell cycle phase t... BP 0.0401660115558398 AT3G56870//TRM7//ATCDT1A GO:0031048 chromatin silencing by small RNA BP 0.0437620624951612 AT3G56870//AT5G26760//TRM7//AT4G31880 GO:0009968 negative regulation of signal transducti... BP 0.0475604665508929 ATICMTA//AT4G18593//AtETR1 GO:0010648 negative regulation of cell communicatio... BP 0.0475604665508929 ATICMTA//AT4G18593//AtETR1 GO:0023057 negative regulation of signaling BP 0.0475604665508929 ATICMTA//AT4G18593//AtETR1 GO:0044770 cell cycle phase transition BP 0.0475604665508929 AT3G56870//TRM7//ATCDT1A GO:0044772 mitotic cell cycle phase transition BP 0.0475604665508929 AT3G56870//TRM7//ATCDT1A GO:0031324 negative regulation of cellular metaboli... BP 0.0516624012641865 AT3G56870//ATMYB86//AT5G26760//TRM7//AT4G31880//AT4G18593//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:1902532 negative regulation of intracellular sig... BP 0.0571063993166964 AT4G18593//AtETR1 GO:0006342 chromatin silencing BP 0.0573008468496171 AT3G56870//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A GO:0045814 negative regulation of gene expression, ... BP 0.0587571135925105 AT3G56870//AT5G26760//TRM7//AT4G31880//ABH1//ATCDT1A GO:0009698 phenylpropanoid metabolic process BP 0.063791671458346 ATPRR1//CCH//ATCAD7//AT4G11190 GO:0015824 proline transport BP 0.0666929220977482 ATSGP2//AT1G76520 GO:0009817 defense response to fungus, incompatible... BP 0.071672459609611 PCK1//ATMLO6 GO:0015804 neutral amino acid transport BP 0.071672459609611 ATSGP2//AT1G76520 GO:0010629 negative regulation of gene expression BP 0.0753882047403619 AT3G56870//ATMYB86//AT5G26760//mtACP3//TRM7//AT4G31880//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0010605 negative regulation of macromolecule met... BP 0.0770254131763927 AT3G56870//ATMYB86//AT5G26760//mtACP3//TRM7//AT4G31880//AT4G18593//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0006865 amino acid transport BP 0.077757803611989 CAT2//ATSGP2//AT1G76520//SIAR1 GO:0033037 polysaccharide localization BP 0.0798070066899595 ATGSL09//AtETR1//ATMLO6 GO:0052545 callose localization BP 0.0798070066899595 ATGSL09//AtETR1//ATMLO6 GO:0044699 single-organism process BP 0.0808880552876208 PSBF//PIP5K3//COP9//AT4G16750//ATPRR1//CAT2//CIB5//HCF164//AT3G56870//AT5G26760//AT5G61670//AT5G60760//AT5G60530//EOL2//anac099//AT5G51560//ATSDI1//mtACP3//KAT1//ATDUR3//CYP706A3//ATUBC8//AT5G40910//ATMYB23//ATGSL09//AT5G24070//ATICMTA//AT5G22530//ATF2//AT5G10540//AT5G07760//WCRKC1//ATSED5//ATG8G//AT3G59120//TRM7//ASL16//CCH//ABCG18//AT3G53100//CYP71B30P//AT3G51150//CRK4//ATCAD7//PCK1//ARAC3//AT4G32640//AT4G31880//MEF29//AT4G25710//ATFSD1//AT4G18593//AT4G13840//AtYUC2//AT4G11190//ATMSRB6//AT4G02850//AT2G40460//ATXYN1//AT1G07025//ATNDI1//AT3G06130//AT1G33270//QQS//AT3G20390//AT3G17020//ATSGP2//CLE27//AT-RSH2//IAA31//AtRLP32//AT3G03330//AT3G09180//ATGPAT2//LEA14//AT1G43020//AtRLP7//COG0212//AT1G71250//AT1G76520//AT1G76460//AtbZIP//AT1G73660//AtETR1//AT1G55880//AtDJ1B//ATGA2OX1//ATGSTU23//AT1G06750//AT1G48550//SIAR1//AT1G35710//ATPEX2//AT1G65070//AT1G22550//BDG1//AHP6//AT1G64800//AT2G17600//ZIP7//ABH1//AT2G21960//APG9//ATCDT1A//AtSDD1//ATWRKY10//GXM3//ATMLO6//AT2G20920//pEARLI4//NCRK//OTLD1//AtCYS2//AtPNP-A//ATDET2//CYP78A6//AT2G47880//APD1//ACD11//ATOFP2 GO:0002238 response to molecule of fungal origin BP 0.0819750997287438 AT3G17020//AT1G77280 GO:0010565 regulation of cellular ketone metabolic ... BP 0.0819750997287438 EOL2//BDG1 GO:0009892 negative regulation of metabolic process BP 0.0933475182885639 AT3G56870//ATMYB86//AT5G26760//mtACP3//TRM7//AT4G31880//AT4G18593//ABH1//ATCDT1A//AtSDD1//OTLD1//ATOFP2 GO:0006635 fatty acid beta-oxidation BP 0.0985404598635324 CAT2//AT3G03330//ATPEX2//APG9 GO:1990267 response to transition metal nanoparticl... BP 0.100489079203433 ATFSD1//AtETR1//AT2G20030 GO:1902531 regulation of intracellular signal trans... BP 0.103802513744319 AT4G18593//AtETR1 GO:0019395 fatty acid oxidation BP 0.106938634555119 CAT2//AT3G03330//ATPEX2//APG9 GO:0015849 organic acid transport BP 0.112712040604082 CAT2//ATSGP2//AT1G76520//SIAR1 GO:0046942 carboxylic acid transport BP 0.112712040604082 CAT2//ATSGP2//AT1G76520//SIAR1 GO:0006631 fatty acid metabolic process BP 0.11413571398558 CAT2//mtACP3//ATG8G//AT3G03330//ATPEX2//APG9//AtCYS2 GO:0052386 cell wall thickening BP 0.121083325945879 ATGSL09//AtETR1 GO:0052542 defense response by callose deposition BP 0.121083325945879 AtETR1//ATMLO6 GO:0052543 callose deposition in cell wall BP 0.121083325945879 ATGSL09//AtETR1 GO:0034440 lipid oxidation BP 0.121625358845608 CAT2//AT3G03330//ATPEX2//APG9 GO:0009607 response to biotic stimulus BP 0.130768034349376 mtACP3//BGLU32//AT5G22530//CRK4//ATCAD7//PCK1//AT2G40460//AT3G17020//AT-RSH2//AtRLP32//LEA14//AtRLP7//AtETR1//AT1G35710//APG9//AT1G77280//ATMLO6//AtPNP-A//ACD11 GO:0043207 response to external biotic stimulus BP 0.130768034349376 mtACP3//BGLU32//AT5G22530//CRK4//ATCAD7//PCK1//AT2G40460//AT3G17020//AT-RSH2//AtRLP32//LEA14//AtRLP7//AtETR1//AT1G35710//APG9//AT1G77280//ATMLO6//AtPNP-A//ACD11 GO:0051707 response to other organism BP 0.130768034349376 mtACP3//BGLU32//AT5G22530//CRK4//ATCAD7//PCK1//AT2G40460//AT3G17020//AT-RSH2//AtRLP32//LEA14//AtRLP7//AtETR1//AT1G35710//APG9//AT1G77280//ATMLO6//AtPNP-A//ACD11 GO:0006869 lipid transport BP 0.130968801691387 AT4G25710//ATPEX2//ACD11 GO:0042398 cellular modified amino acid biosyntheti... BP 0.132967490973259 CCH//COG0212 GO:0010103 stomatal complex morphogenesis BP 0.134986489837309 ABCG18//AtRLP7//AtSDD1 GO:0016458 gene silencing BP 0.138138098391717 AT3G56870//AT5G26760//mtACP3//TRM7//AT4G31880//ABH1//ATCDT1A GO:0006826 iron ion transport BP 0.143147573943956 CCH//AtbZIP//ZIP7 GO:0009605 response to external stimulus BP 0.143259612820541 ATSDI1//mtACP3//ATDUR3//BGLU32//AT5G22530//CRK4//ATCAD7//PCK1//AT4G31880//AT2G40460//AT3G17020//AT-RSH2//IAA31//AtRLP32//LEA14//AtRLP7//AtbZIP//AtETR1//AT1G35710//ZIP7//APG9//AT1G77280//ATMLO6//OTLD1//AtPNP-A//ACD11 GO:0006891 intra-Golgi vesicle-mediated transport BP 0.145102570589558 ATSED5//ATPEX2 GO:0016558 protein import into peroxisome matrix BP 0.147288636920989 CAT2//AT3G03330//ATPEX2 GO:0006625 protein targeting to peroxisome BP 0.151468492881989 CAT2//AT3G03330//ATPEX2 GO:0043574 peroxisomal transport BP 0.151468492881989 CAT2//AT3G03330//ATPEX2 GO:0072662 protein localization to peroxisome BP 0.151468492881989 CAT2//AT3G03330//ATPEX2 GO:0072663 establishment of protein localization to... BP 0.151468492881989 CAT2//AT3G03330//ATPEX2 GO:0031047 gene silencing by RNA BP 0.153821020698722 AT3G56870//AT5G26760//mtACP3//TRM7//AT4G31880//ABH1 GO:0048523 negative regulation of cellular process BP 0.155072140420899 AT3G56870//ATMYB86//AT5G26760//ATICMTA//TRM7//AT4G31880//AT4G18593//AtETR1//ABH1//ATCDT1A//OTLD1//ATOFP2 GO:0090626 plant epidermis morphogenesis BP 0.162824914289755 ATMYB23//ABCG18//AtRLP7//AtSDD1//NCRK GO:0000959 mitochondrial RNA metabolic process BP 0.163600319462402 584_ GO:0006074 (1->3)-beta-D-glucan metabolic process BP 0.163600319462402 635_ GO:0006075 (1->3)-beta-D-glucan biosynthetic proces... BP 0.163600319462402 635_ GO:0006521 regulation of cellular amino acid metabo... BP 0.163600319462402 832_ GO:0006535 cysteine biosynthetic process from serin... BP 0.163600319462402 594_ GO:0006829 zinc II ion transport BP 0.163600319462402 480_ GO:0009065 glutamine family amino acid catabolic pr... BP 0.163600319462402 917_ GO:0009396 folic acid-containing compound biosynthe... BP 0.163600319462402 880_ GO:0010104 regulation of ethylene-activated signali... BP 0.163600319462402 133_ GO:0017004 cytochrome complex assembly BP 0.163600319462402 226_ GO:0033238 regulation of cellular amine metabolic p... BP 0.163600319462402 832_ GO:0046246 terpene biosynthetic process BP 0.163600319462402 544_