GOID TERM ONTOLOGY pValue Genes GO:1990267 response to transition metal nanoparticl... BP 4.95626269169052e-08 ATNRAMP4//AT5G55620//CYP71B5//AT3G12900//AT3G07720//ATMTK//ATMYB72//AT2G20030//ATHMA4 GO:0071732 cellular response to nitric oxide BP 3.33931301183901e-07 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0010039 response to iron ion BP 5.02017621262703e-07 ATNRAMP4//AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0071731 response to nitric oxide BP 5.36667259188205e-07 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:1902170 cellular response to reactive nitrogen s... BP 8.2563169677178e-07 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0071281 cellular response to iron ion BP 5.98362379788649e-06 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0055072 iron ion homeostasis BP 1.04630993535172e-05 BHLH101//ATNRAMP4//BHLH039//PYE GO:0034614 cellular response to reactive oxygen spe... BP 1.56953922469582e-05 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0071248 cellular response to metal ion BP 1.56953922469582e-05 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0071241 cellular response to inorganic substance BP 2.37604233231991e-05 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0098771 inorganic ion homeostasis BP 3.13866173868444e-05 ATOPT3//BHLH101//ATNRAMP4//BHLH039//PYE//ATNHX6//ATHMA4 GO:0034599 cellular response to oxidative stress BP 3.47254677742985e-05 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0055076 transition metal ion homeostasis BP 4.14999875988276e-05 BHLH101//ATNRAMP4//BHLH039//PYE//ATHMA4 GO:0010035 response to inorganic substance BP 6.0181630472304e-05 ATNRAMP4//AT5G55620//AT5G37670//CYP71B5//AT3G48450//PME1//AT3G12900//AT3G20300//ATCDC48//AT3G07720//AHG3//ATMTK//ATWRKY65//ATMYB72//DOR//ATPAL1//ATRNR1//GLP5//AT2G20030//ATCAMBP25//ATHMA4 GO:0055065 metal ion homeostasis BP 9.06143657921532e-05 ATOPT3//BHLH101//ATNRAMP4//BHLH039//PYE//ATHMA4 GO:0055080 cation homeostasis BP 0.000320302288185975 ATOPT3//BHLH101//ATNRAMP4//BHLH039//PYE//ATNHX6//ATHMA4 GO:0010038 response to metal ion BP 0.000425136999468975 ATNRAMP4//AT5G55620//CYP71B5//AT3G12900//ATCDC48//AT3G07720//ATMTK//ATMYB72//ATRNR1//AT2G20030//ATHMA4 GO:0050801 ion homeostasis BP 0.000556039489964946 ATOPT3//BHLH101//ATNRAMP4//BHLH039//PYE//ATNHX6//ATHMA4 GO:0042592 homeostatic process BP 0.000690756599381538 ATOPT3//BHLH101//ATNRAMP4//BHLH039//PYE//APRL5//ATKU80//ATNHX6//ATCXXS1//ATHMA4 GO:1901699 cellular response to nitrogen compound BP 0.000821240113910199 AT5G55620//CHO//CYP71B5//FDM3//AT3G12900//ATMTK//ATMYB72 GO:0071369 cellular response to ethylene stimulus BP 0.000839758683760448 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0048878 chemical homeostasis BP 0.00197182337476074 ATOPT3//BHLH101//ATNRAMP4//BHLH039//PYE//ATNHX6//ATHMA4 GO:1901698 response to nitrogen compound BP 0.00284302426974955 AT5G55620//CHO//CYP71B5//AT3G48450//PME1//FDM3//AT3G12900//ATMTK//ATWRKY65//ATMYB72//XERICO//GLP5 GO:0080167 response to karrikin BP 0.0044872763255097 ATPAL2//AT4G02940//SNRK2-8//ATPAL1 GO:0006811 ion transport BP 0.00712325263760363 ATNRAMP4//ATNRT2.3//AT5G12010//AT5G10190//CHO//AT3G58060//AT4G33500//PME1//EMB3004//ATWRKY65//ATNHX6//RGLG4//GLP5//AT2G17760//ATHMA4 GO:0010043 response to zinc ion BP 0.00787164688637669 AT3G07720//AT2G20030//ATHMA4 GO:0015706 nitrate transport BP 0.00788443046764899 ATNRT2.3//AT5G10190//PME1//ATWRKY65//GLP5 GO:0033554 cellular response to stress BP 0.0079432825020299 BHLH101//AT5G63710//AT5G55620//ODB2//BHLH039//CYP71B5//PYE//ATUNG//AT3G12900//ATAIG1//ATMTK//ATKU80//ATWRKY65//ATMYB72//DOR//GLP5//ARP GO:0010106 cellular response to iron ion starvation BP 0.00867698965699958 BHLH101//BHLH039//PYE//ATWRKY65 GO:0010119 regulation of stomatal movement BP 0.0153347664946111 AHG3//DOR GO:0009788 negative regulation of abscisic acid-act... BP 0.0198629951936698 AHG3//DOR GO:1901420 negative regulation of response to alcoh... BP 0.0198629951936698 AHG3//DOR GO:0009812 flavonoid metabolic process BP 0.020326622930697 AT5G63710//CYP705A5//ATPAL2//ATAIG1//ATPAL1 GO:0000302 response to reactive oxygen species BP 0.0205180833723596 AT5G55620//AT5G37670//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0071705 nitrogen compound transport BP 0.0219211661641965 ATOPT3//ATNRT2.3//AT5G12010//AT5G10190//PME1//EMB3004//ATWRKY65//AT1G22540//GLP5//AT2G17760 GO:0006979 response to oxidative stress BP 0.022819228062886 AT5G55620//AT5G37670//ATPAL2//CYP71B5//AT3G12900//ATMTK//ATMYB72//ATPAL1 GO:0050896 response to stimulus BP 0.0243713644959182 MIZ1//ATOPT3//BHLH101//WAV2//ATNRAMP4//AT5G63710//AT5G55620//CYP705A5//ODB2//AT5G37670//AT5G10190//CHO//BHLH039//ARR17//ATPAL2//CYP71B5//AT3G48450//PYE//AT4G33500//IAA29//PME1//AT4G02940//ATPLC2//FDM3//ATUNG//AT3G12900//ATAIG1//AT3G20300//ATCDC48//AT3G07720//AHG3//ATMTK//AT1G76590//AT1G76460//ATKU80//SNRK2-8//ATWRKY65//AT1G11360//ATMYB72//RGLG4//DOR//XERICO//ATPAL1//ATRNR1//GLP5//UGT73C1//AT2G46520//AT2G20030//MAKR4//ATCAMBP25//ARP//ATHMA4 GO:0015698 inorganic anion transport BP 0.0263395057116852 ATNRT2.3//AT5G10190//PME1//ATWRKY65//GLP5 GO:0006950 response to stress BP 0.0281582873592179 BHLH101//ATNRAMP4//AT5G63710//AT5G55620//ODB2//AT5G37670//AT5G10190//CHO//BHLH039//ATPAL2//CYP71B5//PYE//FDM3//ATUNG//AT3G12900//ATAIG1//AT3G20300//ATCDC48//AT3G07720//AHG3//ATMTK//AT1G76590//ATKU80//SNRK2-8//ATWRKY65//ATMYB72//RGLG4//DOR//XERICO//ATPAL1//GLP5//AT2G46520//ATCAMBP25//ARP GO:0042221 response to chemical BP 0.0285577109785593 ATNRAMP4//AT5G55620//AT5G37670//AT5G10190//CHO//ARR17//CYP71B5//AT3G48450//IAA29//PME1//FDM3//AT3G12900//AT3G20300//ATCDC48//AT3G07720//AHG3//ATMTK//ATWRKY65//AT1G11360//ATMYB72//RGLG4//DOR//XERICO//ATPAL1//ATRNR1//GLP5//AT2G46520//AT2G20030//MAKR4//ATCAMBP25//ATHMA4 GO:0006820 anion transport BP 0.0302222654553153 ATNRT2.3//AT5G12010//AT5G10190//PME1//EMB3004//ATWRKY65//GLP5//AT2G17760 GO:1901616 organic hydroxy compound catabolic proce... BP 0.0303476015441053 BST1//ATPAL1 GO:0031668 cellular response to extracellular stimu... BP 0.0304594907346311 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65//DOR GO:0019222 regulation of metabolic process BP 0.0307154851829073 BHLH101//AtGBF1//ATNRAMP4//AT5G63710//OBP4//CHO//BHLH039//ARR17//ATPAL2//PYE//AT4G33500//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AtSERPIN1//ATPAL1//AT2G42860//LRL1//ATCTH//ATCAMBP25//ARP//ATDOF2.4//LUH GO:0009605 response to external stimulus BP 0.030786879896792 MIZ1//ATOPT3//BHLH101//ATNRAMP4//CYP705A5//AT5G10190//CHO//BHLH039//PYE//FDM3//ATAIG1//ATCDC48//AT3G07720//ATWRKY65//AT1G11360//ATMYB72//RGLG4//DOR//GLP5//AT2G46520 GO:0009963 positive regulation of flavonoid biosynt... BP 0.0311768129421753 AT5G63710//ATPAL2//ATPAL1 GO:0071496 cellular response to external stimulus BP 0.0312171914866088 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65//DOR GO:0010167 response to nitrate BP 0.0328609094843545 AT3G48450//PME1//ATWRKY65//GLP5 GO:0006598 polyamine catabolic process BP 0.0332451076548684 ATPAL2//ATPAL1 GO:0006722 triterpenoid metabolic process BP 0.0332451076548684 CYP705A5//ATCB5-B GO:0009142 nucleoside triphosphate biosynthetic pro... BP 0.0332451076548684 ATRNR1//ATHMA4 GO:0009991 response to extracellular stimulus BP 0.0360229837998969 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65//DOR GO:0009723 response to ethylene BP 0.036305402415315 AT5G55620//CYP71B5//AT3G12900//ATMTK//ATMYB72 GO:0048469 cell maturation BP 0.0383358977204477 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0048764 trichoblast maturation BP 0.0383358977204477 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0048765 root hair cell differentiation BP 0.0383358977204477 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0009889 regulation of biosynthetic process BP 0.0386976650602319 BHLH101//AtGBF1//AT5G63710//OBP4//BHLH039//ARR17//ATPAL2//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//ATPAL1//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:0080090 regulation of primary metabolic process BP 0.0434834422706256 BHLH101//AtGBF1//AT5G63710//OBP4//BHLH039//ARR17//ATPAL2//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AtSERPIN1//ATPAL1//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:0021700 developmental maturation BP 0.047145525736199 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0032870 cellular response to hormone stimulus BP 0.0488889582520551 AT5G55620//ARR17//CYP71B5//AT3G12900//AHG3//ATMTK//ATMYB72//RGLG4//DOR GO:0010054 trichoblast differentiation BP 0.0495212329038676 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.0514024044944802 AT5G63710//ATPAL2//ATPAL1 GO:0009813 flavonoid biosynthetic process BP 0.051831983080197 AT5G63710//ATPAL2//ATAIG1//ATPAL1 GO:0071495 cellular response to endogenous stimulus BP 0.0518867402345505 AT5G55620//ARR17//CYP71B5//AT3G12900//AHG3//ATMTK//ATMYB72//RGLG4//DOR GO:1901615 organic hydroxy compound metabolic proce... BP 0.0518867402345505 BST1//CYP705A5//AT1G18060//EMB3004//AT3G07720//XERICO//ATPAL1//ATCAMBP25//ATCB5-B GO:0010053 root epidermal cell differentiation BP 0.0532154798343289 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0009267 cellular response to starvation BP 0.0544817853369229 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65 GO:0090627 plant epidermal cell differentiation BP 0.055765542815068 ATOPT3//BST1//CYP705A5//ATAIG1//LRL1 GO:0006595 polyamine metabolic process BP 0.0562453489128543 ATPAL2//ATPAL1 GO:0009787 regulation of abscisic acid-activated si... BP 0.0562453489128543 AHG3//DOR GO:0042594 response to starvation BP 0.0583854075547342 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65 GO:0031669 cellular response to nutrient levels BP 0.0597215035960844 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65 GO:0065008 regulation of biological quality BP 0.0598254528401406 ATOPT3//BHLH101//ATNRAMP4//CHO//BHLH039//PYE//FDM3//APRL5//ATKU80//ATNHX6//ATCXXS1//RGLG4//ATHMA4 GO:0009141 nucleoside triphosphate metabolic proces... BP 0.0598816381858437 ATRNR1//ATHMA4 GO:1901419 regulation of response to alcohol BP 0.0598816381858437 AHG3//DOR GO:0006355 regulation of transcription, DNA-templat... BP 0.0608986528955983 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:1903506 regulation of nucleic acid-templated tra... BP 0.0608986528955983 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:2001141 regulation of RNA biosynthetic process BP 0.0608986528955983 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:0051252 regulation of RNA metabolic process BP 0.0638741413516173 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:0009805 coumarin biosynthetic process BP 0.0673875321807021 ATPAL2//ATPAL1 GO:0031667 response to nutrient levels BP 0.0681035125338008 BHLH101//BHLH039//PYE//ATAIG1//ATWRKY65 GO:0031323 regulation of cellular metabolic process BP 0.0701650007039676 BHLH101//AtGBF1//ATNRAMP4//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AtSERPIN1//AT2G42860//LRL1//ATCTH//ATCAMBP25//ARP//ATDOF2.4//LUH GO:0009804 coumarin metabolic process BP 0.071251568635502 ATPAL2//ATPAL1 GO:0010155 regulation of proton transport BP 0.071251568635502 CHO//AT4G33500 GO:1901576 organic substance biosynthetic process BP 0.0726107457189216 ATOPT3//BHLH101//AtGBF1//AT5G63710//OBP4//AT5G58510//AT5G10190//BSK10//AT3G61930//BHLH039//ARR17//ATPAL2//PYE//AT4G33500//IAA29//APUM6//TCP2//AT1G18060//FDM3//AT3G30300//ATUNG//ATAIG1//AtMYB10//ATCM1//ATCDC48//AT3G07720//ATMTK//ATKU80//ATWRKY65//ATCXXS1//ATMYB72//DGAT3//CYCT1;3//RGLG4//AT1G54290//AtCaN2//ATPAL1//ATRNR1//AT2G42860//GLP5//AT2G46520//UMAMIT12//LRL1//ATCTH//ARP//ATDOF2.4//ATHMA4//ATCB5-B//LUH GO:0042398 cellular modified amino acid biosyntheti... BP 0.0751860538613075 ATPAL2//ATPAL1 GO:0022622 root system development BP 0.0786598580902188 ATOPT3//WAV2//BST1//CYP705A5//ATAIG1//GLP5//LRL1 GO:0048364 root development BP 0.0786598580902188 ATOPT3//WAV2//BST1//CYP705A5//ATAIG1//GLP5//LRL1 GO:0006865 amino acid transport BP 0.0794575244153562 AT5G12010//EMB3004//GLP5//AT2G17760 GO:0006812 cation transport BP 0.0802445334090815 ATNRAMP4//AT5G12010//CHO//AT3G58060//AT4G33500//ATWRKY65//ATNHX6//RGLG4//ATHMA4 GO:0009725 response to hormone BP 0.0812905728725616 AT5G55620//ARR17//CYP71B5//IAA29//AT3G12900//AT3G20300//AHG3//ATMTK//ATMYB72//RGLG4//DOR//XERICO//AT2G46520//MAKR4 GO:0019438 aromatic compound biosynthetic process BP 0.0819175733911927 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//ATPAL2//PYE//IAA29//APUM6//TCP2//FDM3//ATAIG1//AtMYB10//ATCM1//AT3G07720//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//ATPAL1//ATRNR1//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//ATHMA4//LUH GO:0080147 root hair cell development BP 0.0841930481569376 ATOPT3//ATAIG1//LRL1 GO:0009074 aromatic amino acid family catabolic pro... BP 0.0873861531360342 ATPAL2//ATPAL1 GO:0034654 nucleobase-containing compound biosynthe... BP 0.0886443353416866 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//APUM6//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//ATRNR1//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//ATHMA4//LUH GO:1901362 organic cyclic compound biosynthetic pro... BP 0.0936512473971365 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//ATPAL2//PYE//IAA29//APUM6//TCP2//FDM3//ATAIG1//AtMYB10//ATCM1//AT3G07720//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//ATPAL1//ATRNR1//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//ATHMA4//ATCB5-B//LUH GO:0019219 regulation of nucleobase-containing comp... BP 0.0940264731311608 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:0010556 regulation of macromolecule biosynthetic... BP 0.0953473451821552 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:2000112 regulation of cellular macromolecule bio... BP 0.0953473451821552 BHLH101//AtGBF1//OBP4//BHLH039//ARR17//PYE//IAA29//TCP2//FDM3//ATAIG1//AtMYB10//ATKU80//ATWRKY65//ATMYB72//CYCT1;3//AT2G42860//LRL1//ATCTH//ARP//ATDOF2.4//LUH GO:0006875 cellular metal ion homeostasis BP 0.10012890181506 ATOPT3//ATNRAMP4