GOID TERM ONTOLOGY pValue Genes GO:0009657 plastid organization BP 0.00243059823956903 AT2G26500//EMB3136//ACD1//ARC6//emb1211//AT5G13770//AT5G11480//MSL2//ATCNFU3//PDF2//AT4G02530//AT1G44920//AT2G31690//ATCAF1 GO:0044085 cellular component biogenesis BP 0.00454507232160015 AT2G26500//EMB3136//ACD1//RPL9//AT5G66540//AT5G65360//PIP2;4//AT5G50420//ARC6//emb1211//AT5G11480//AT5G07080//AGP8//AtCAL2//ATCNFU3//CH-42//PDF2//AT4G02530//HTA13//HCF243//AT3G03100//ATISU2//AT1G29070//TUB5//ATXYL1//ABCB1//ATNAF1//ATCAF1//AtTic20-II//AT2G23940 GO:0016226 iron-sulfur cluster assembly BP 0.0120538624585327 ACD1//emb1211//ATCNFU3//PDF2//ATISU2 GO:0031163 metallo-sulfur cluster assembly BP 0.0120538624585327 ACD1//emb1211//ATCNFU3//PDF2//ATISU2 GO:0071840 cellular component organization or bioge... BP 0.015107342030615 AT2G26500//AT4G15980//EMB3136//ACD1//RPL9//AT5G66540//AT5G65360//VIP4//PIP2;4//PMR5//THE1//AT5G50420//PME5//ARC6//AT5G40450//ATMYB23//emb1211//AT5G13770//AT5G11480//MSL2//AtGUS2//AT5G07080//AGP8//AtCAL2//AT4G39680//AT4G38660//ATCSP2//ATCNFU3//sks4//CML42//CH-42//PDF2//AT4G02530//ATEXP8//HTA13//KLCR2//DDL//HCF243//AT3G03100//CDC48C//ATISU2//LYM3//AT1G29070//TUB5//AT1G44920//ATXYL1//AT2G31690//ABCB1//AtENODL14//AT1G23000//ATNAF1//AT1G51200//ATCAF1//AT2G32000//AtTic20-II//AT2G23940//PFN1//AT2G23680//AT2G19080 GO:0022607 cellular component assembly BP 0.0181841056454891 AT2G26500//EMB3136//ACD1//AT5G65360//AT5G50420//ARC6//emb1211//AT5G11480//AtCAL2//ATCNFU3//PDF2//HTA13//HCF243//AT3G03100//ATISU2//TUB5//ABCB1//AtTic20-II//AT2G23940 GO:0006778 porphyrin-containing compound metabolic ... BP 0.0206817026441087 ACD1//ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0033013 tetrapyrrole metabolic process BP 0.0215849353279806 ACD1//ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0006779 porphyrin-containing compound biosynthet... BP 0.0218505242875465 ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0033014 tetrapyrrole biosynthetic process BP 0.022936385029662 ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0019321 pentose metabolic process BP 0.0242407004338607 AT5G43910//AT4G28706//AT4G02030 GO:0009668 plastid membrane organization BP 0.0254719923992051 EMB3136//ACD1//emb1211//PDF2//AT4G02530//AT1G44920//AT2G31690 GO:0010027 thylakoid membrane organization BP 0.0254719923992051 EMB3136//ACD1//emb1211//PDF2//AT4G02530//AT1G44920//AT2G31690 GO:0009658 chloroplast organization BP 0.0264685970667059 EMB3136//ARC6//emb1211//AT5G13770//AT5G11480//MSL2//ATCNFU3//ATCAF1 GO:0016043 cellular component organization BP 0.0277793508806248 AT2G26500//AT4G15980//EMB3136//ACD1//AT5G65360//VIP4//PMR5//THE1//AT5G50420//PME5//ARC6//AT5G40450//ATMYB23//emb1211//AT5G13770//AT5G11480//MSL2//AtGUS2//AGP8//AtCAL2//AT4G39680//AT4G38660//ATCSP2//ATCNFU3//sks4//CML42//PDF2//AT4G02530//ATEXP8//HTA13//KLCR2//DDL//HCF243//AT3G03100//CDC48C//ATISU2//LYM3//TUB5//AT1G44920//ATXYL1//AT2G31690//ABCB1//AtENODL14//AT1G23000//AT1G51200//ATCAF1//AT2G32000//AtTic20-II//AT2G23940//PFN1//AT2G23680//AT2G19080 GO:0006655 phosphatidylglycerol biosynthetic proces... BP 0.0323171736886524 ATCCD1//CH-42//LPAT3 GO:0046471 phosphatidylglycerol metabolic process BP 0.0323171736886524 ATCCD1//CH-42//LPAT3 GO:0010091 trichome branching BP 0.0329117750148343 ATMYB23//CML42 GO:0042254 ribosome biogenesis BP 0.0344491576165928 AT2G26500//EMB3136//RPL9//AT5G66540//AT5G11480//CH-42//AT4G02530//AT1G29070//ATNAF1//ATCAF1 GO:0022613 ribonucleoprotein complex biogenesis BP 0.0363721992882417 AT2G26500//EMB3136//RPL9//AT5G66540//AT5G11480//CH-42//AT4G02530//AT1G29070//ATNAF1//ATCAF1 GO:0010020 chloroplast fission BP 0.0382849961519908 ARC6//MSL2 GO:0048232 male gamete generation BP 0.0382849961519908 APK4//CER3 GO:0016108 tetraterpenoid metabolic process BP 0.041424629764811 ATCCD1//CH-42//AT4G02530//ATFC-II GO:0016109 tetraterpenoid biosynthetic process BP 0.041424629764811 ATCCD1//CH-42//AT4G02530//ATFC-II GO:0016116 carotenoid metabolic process BP 0.041424629764811 ATCCD1//CH-42//AT4G02530//ATFC-II GO:0016117 carotenoid biosynthetic process BP 0.041424629764811 ATCCD1//CH-42//AT4G02530//ATFC-II GO:0006783 heme biosynthetic process BP 0.0439659376292594 HEMA3//ATFC-II GO:0043572 plastid fission BP 0.0439659376292594 ARC6//MSL2 GO:0042537 benzene-containing compound metabolic pr... BP 0.0464981039194223 AT5G43910//AT3G44190//AT4G02530//AT3G17410//AT2G23680 GO:0034622 cellular macromolecular complex assembly BP 0.0465590251655727 AT2G26500//EMB3136//AT5G65360//AT5G50420//ARC6//AtCAL2//HTA13//HCF243//AT3G03100//TUB5//ABCB1//AtTic20-II//AT2G23940 GO:0006636 unsaturated fatty acid biosynthetic proc... BP 0.0484930532362143 ATCCD1//CH-42//AT4G02530 GO:0033559 unsaturated fatty acid metabolic process BP 0.0484930532362143 ATCCD1//CH-42//AT4G02530 GO:0035966 response to topologically incorrect prot... BP 0.0489617732201392 AT5G42010//ATBZIP61//AtCAL2//AT3G17410//AT3G03100//AT2G23940 GO:0042168 heme metabolic process BP 0.0499366659667371 HEMA3//ATFC-II GO:0008380 RNA splicing BP 0.050451381263509 AT5G50000//DDL//AT1G22910//CDC48C//MOS3//ATGTF2H2//ATCAF1 GO:0035670 plant-type ovary development BP 0.0507221111630627 ACD1//emb1211//PDF2//ATPAP16//AGO5 GO:0048481 ovule development BP 0.0507221111630627 ACD1//emb1211//PDF2//ATPAP16//AGO5 GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 0.0520835196952231 RPL9//ATCCD1//CH-42//FKP1//AT4G02530//AT1G44920//ATFC-II GO:0046490 isopentenyl diphosphate metabolic proces... BP 0.0520835196952231 RPL9//ATCCD1//CH-42//FKP1//AT4G02530//AT1G44920//ATFC-II GO:0080129 proteasome core complex assembly BP 0.0521234096736418 AtCAL2//AT3G03100//AT2G23940 GO:0000375 RNA splicing, via transesterification re... BP 0.0661313263832453 DDL//AT1G22910//CDC48C//ATCAF1 GO:0000377 RNA splicing, via transesterification re... BP 0.0661313263832453 DDL//AT1G22910//CDC48C//ATCAF1 GO:0043623 cellular protein complex assembly BP 0.0681942346038962 AT2G26500//EMB3136//AT5G50420//ARC6//AtCAL2//HCF243//AT3G03100//TUB5//ABCB1//AtTic20-II//AT2G23940 GO:0071103 DNA conformation change BP 0.0692620375216014 AT5G65360//ATCSP2//HTA13//AT2G32000 GO:0010228 vegetative to reproductive phase transit... BP 0.0694476738124302 ACD1//emb1211//AtCAL2//ATCSP2//PDF2//DDL//ABCB1//AT1G51200//AT2G32000 GO:0010167 response to nitrate BP 0.07131557264827 AT5G64100//AT5G07080//ATWRKY9//ACH1//AT2G27660//ATPP2-A3 GO:0015706 nitrate transport BP 0.07131557264827 AT5G64100//AT5G07080//ATWRKY9//ACH1//AT2G27660//ATPP2-A3 GO:0048443 stamen development BP 0.0724280397865006 AT4G38660//ATCSP2//sks4//ABCB1//AGO5 GO:0048466 androecium development BP 0.0724280397865006 AT4G38660//ATCSP2//sks4//ABCB1//AGO5 GO:0072330 monocarboxylic acid biosynthetic process BP 0.0730062976770919 AT5G43910//ATCCD1//AT3G59580//AT3G51660//FAE1//CH-42//AT4G02530//AT3G17410//AT1G77670//AT2G23680 GO:0048518 positive regulation of biological proces... BP 0.0738686888799092 EMB3136//ACD1//VIP4//AT5G40450//ATBZIP61//AT4G39680//FAE1//AT4G02530//DDL//ELIP//HEB2//CDC48C//AT1G07440//MOS3//ABCB1//ECT8//ATRABG3B//ATFC-II GO:0009697 salicylic acid biosynthetic process BP 0.0757484499484422 AT5G43910//AT4G02530//AT3G17410//AT2G23680 GO:0048440 carpel development BP 0.0759202468722533 ACD1//emb1211//PDF2//ATPAP16//ABCB1//AGO5 GO:0009913 epidermal cell differentiation BP 0.0763821781543415 ATMYB23//PDF2 GO:0030855 epithelial cell differentiation BP 0.0763821781543415 ATMYB23//PDF2 GO:0015994 chlorophyll metabolic process BP 0.0806356752328786 ACD1//ATCCD1//CH-42//AT4G02530//ELIP GO:0006461 protein complex assembly BP 0.0819306241389185 AT2G26500//EMB3136//AT5G65360//AT5G50420//ARC6//AtCAL2//HTA13//HCF243//AT3G03100//TUB5//ABCB1//AtTic20-II//AT2G23940 GO:0009893 positive regulation of metabolic process BP 0.0833430689234195 EMB3136//ACD1//AT5G40450//ATBZIP61//FAE1//AT4G02530//DDL//HEB2//CDC48C//AT1G07440//ECT8//ATRABG3B//ATFC-II GO:0070271 protein complex biogenesis BP 0.0833430689234195 AT2G26500//EMB3136//AT5G65360//AT5G50420//ARC6//AtCAL2//HTA13//HCF243//AT3G03100//TUB5//ABCB1//AtTic20-II//AT2G23940 GO:0071822 protein complex subunit organization BP 0.083411136819211 AT2G26500//EMB3136//AT5G65360//AT5G50420//ARC6//AtCAL2//HTA13//HCF243//AT3G03100//TUB5//ABCB1//AtTic20-II//AT2G23940//PFN1 GO:0008544 epidermis development BP 0.0835559358950922 ATMYB23//PDF2 GO:0060429 epithelium development BP 0.0835559358950922 ATMYB23//PDF2 GO:0009853 photorespiration BP 0.085571598491463 AtCAL2//AT3G03100//AT2G23940 GO:0051186 cofactor metabolic process BP 0.0863022453185788 ACD1//AT5G50000//PGL4//ATCCD1//CH-42//FKP1//AT4G02530//ELIP//AT1G07440//HEMA3//ATFC-II GO:0010207 photosystem II assembly BP 0.0863722870414929 AT2G26500//EMB3136//ARC6//HCF243//AtTic20-II GO:0048467 gynoecium development BP 0.0881537535907265 ACD1//emb1211//PDF2//ATPAP16//ABCB1//AGO5 GO:0006364 rRNA processing BP 0.0940660264041271 AT2G26500//EMB3136//AT5G66540//AT5G11480//CH-42//AT4G02530//ATCAF1 GO:0016072 rRNA metabolic process BP 0.0940660264041271 AT2G26500//EMB3136//AT5G66540//AT5G11480//CH-42//AT4G02530//ATCAF1 GO:0015995 chlorophyll biosynthetic process BP 0.0969521474202043 ATCCD1//CH-42//AT4G02530//ELIP GO:0046189 phenol-containing compound biosynthetic ... BP 0.0969521474202043 AT5G43910//AT4G02530//AT3G17410//AT2G23680 GO:0071705 nitrogen compound transport BP 0.0976641285746486 AT5G25860//AT5G64100//AT5G44910//AT5G39990//AT5G07080//AT5G06570//AT4G10140//AT3G19085//ATWRKY9//ACH1//MOS3//AT2G27660//ATPP2-A3//AT2G19080 GO:0000038 very long-chain fatty acid metabolic pro... BP 0.0984770873764398 CER3//FAE1 GO:0009696 salicylic acid metabolic process BP 0.100731193552953 AT5G43910//AT4G02530//AT3G17410//AT2G23680 GO:0065003 macromolecular complex assembly BP 0.10150070782352 AT2G26500//EMB3136//AT5G65360//AT5G50420//ARC6//AtCAL2//HTA13//HCF243//AT3G03100//TUB5//ABCB1//AtTic20-II//AT2G23940 GO:0010087 phloem or xylem histogenesis BP 0.104973160293993 FKD1//ASL9//ATRABG3B GO:0009910 negative regulation of flower developmen... BP 0.106197808866222 VIP4//MOS3 GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 0.118604601010224 RPL9//ATCCD1//CH-42//AT4G02530//AT1G44920//ATFC-II GO:0048569 post-embryonic organ development BP 0.120106004862889 RAP2.11//ACD1//AT5G43520//emb1211//AT4G38660//ATCSP2//sks4//PDF2//ATPAP16//ACH1//ABCB1//AGO5//AT1G23000 GO:0019684 photosynthesis, light reaction BP 0.121876809767922 AT2G26500//EMB3136//ARC6//AT4G02530//ACR11//HCF243//AtTic20-II GO:0009968 negative regulation of signal transducti... BP 0.122096800515678 AT1G15670//AT1G80440 GO:0010648 negative regulation of cell communicatio... BP 0.122096800515678 AT1G15670//AT1G80440 GO:0023057 negative regulation of signaling BP 0.122096800515678 AT1G15670//AT1G80440 GO:2000242 negative regulation of reproductive proc... BP 0.122096800515678 VIP4//MOS3 GO:0051188 cofactor biosynthetic process BP 0.124643921919652 ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 0.125276327230578 RPL9//PGL4//ATCCD1//CH-42//AT4G02530//AT1G07440//AT1G44920//ATFC-II GO:0042440 pigment metabolic process BP 0.127345257360242 ACD1//ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0046148 pigment biosynthetic process BP 0.127719349077282 ATCCD1//CH-42//AT4G02530//ELIP//HEMA3//ATFC-II GO:0006633 fatty acid biosynthetic process BP 0.1290088511866 ATCCD1//FAE1//CH-42//AT4G02530 GO:0030968 endoplasmic reticulum unfolded protein r... BP 0.131378579750602 AT5G42010//ATBZIP61//AT3G17410 GO:0043094 cellular metabolic compound salvage BP 0.131378579750602 AtCAL2//AT3G03100//AT2G23940 GO:0018958 phenol-containing compound metabolic pro... BP 0.133295123771908 AT5G43910//AT4G02530//AT3G17410//AT2G23680 GO:0008654 phospholipid biosynthetic process BP 0.13547819228924 RPL9//ATCCD1//CH-42//FKP1//AT4G02530//AT1G44920//LPAT3//ATFC-II GO:0006986 response to unfolded protein BP 0.136917037916735 AT5G42010//ATBZIP61//AT3G17410 GO:0034620 cellular response to unfolded protein BP 0.136917037916735 AT5G42010//ATBZIP61//AT3G17410 GO:0035967 cellular response to topologically incor... BP 0.136917037916735 AT5G42010//ATBZIP61//AT3G17410 GO:0071555 cell wall organization BP 0.138216024921449 AT4G15980//PME5//AGP8//AT4G38660//sks4//ATEXP8//ATISU2//LYM3//ATXYL1//ABCB1 GO:0009734 auxin-activated signaling pathway BP 0.138528001994933 FKD1//ABCB1 GO:0006098 pentose-phosphate shunt BP 0.14693781664601 PGL4//ATCCD1//AT4G02530//AT1G07440//ATFC-II GO:0051156 glucose 6-phosphate metabolic process BP 0.14693781664601 PGL4//ATCCD1//AT4G02530//AT1G07440//ATFC-II GO:0048468 cell development BP 0.15000256532023 PIP2;4//AGP14//AT5G43520//ATMYB23//sks4//CML42//KLCR2//ATISU2//MOS3//ABCB1//ATRABG3B