GOID	TERM	ONTOLOGY	pValue	Genes
GO:0005983	starch catabolic process	BP	0.00141032838889499	DPE1//AMY3//GWD
GO:0009251	glucan catabolic process	BP	0.00185084861458884	DPE1//AMY3//GWD
GO:0044247	cellular polysaccharide catabolic proces...	BP	0.00185084861458884	DPE1//AMY3//GWD
GO:0006743	ubiquinone metabolic process	BP	0.00365038711015938	ISPF//AT1G50000//GGPS2
GO:0006744	ubiquinone biosynthetic process	BP	0.00365038711015938	ISPF//AT1G50000//GGPS2
GO:0009070	serine family amino acid biosynthetic pr...	BP	0.004233262099858	bHLH115//ATCYP20-2//CS26//AT1G72190//ISPF//AT1G22700//ATGRP-3
GO:0048445	carpel morphogenesis	BP	0.00845301326800028	AT5G47170//AT3G57250//AT3G09160
GO:0009073	aromatic amino acid family biosynthetic ...	BP	0.00906951258543251	AT5G46580//AT3G18680//ISPF//AT1G22700//AT2G30695
GO:0019344	cysteine biosynthetic process	BP	0.0133194219913906	bHLH115//ATCYP20-2//CS26//ISPF//AT1G22700//ATGRP-3
GO:0006534	cysteine metabolic process	BP	0.0147077712850081	bHLH115//ATCYP20-2//CS26//ISPF//AT1G22700//ATGRP-3
GO:0009069	serine family amino acid metabolic proce...	BP	0.0158479688036627	bHLH115//ATCYP20-2//CS26//AT1G72190//ISPF//AT1G22700//ATGRP-3
GO:0016125	sterol metabolic process	BP	0.0169377601623042	PUT3//ELL1//CKRC1//TT15//AT1G78500
GO:0048467	gynoecium development	BP	0.0171206432389789	AT5G47170//KAN//EMB2771//AT3G57250//AT3G18680//AT3G09160//CKRC1//AGL20
GO:1901661	quinone metabolic process	BP	0.0194374054015012	ISPF//AT1G50000//GGPS2
GO:1901663	quinone biosynthetic process	BP	0.0194374054015012	ISPF//AT1G50000//GGPS2
GO:0042181	ketone biosynthetic process	BP	0.0214332304104236	ISPF//AT1G50000//GGPS2
GO:0044275	cellular carbohydrate catabolic process	BP	0.0235370111618781	DPE1//AMY3//GWD
GO:0008652	cellular amino acid biosynthetic process	BP	0.0237277852018357	bHLH115//ATCYP20-2//AT5G46580//AT3G18680//CS26//AT1G72190//ISPF//AtPPa1//AT1G22700//ATGRP-3//AT2G30695
GO:0006333	chromatin assembly or disassembly	BP	0.02706241109038	HMG//HMGB3//AT3G13350//AT3G09480//AT2G28720
GO:0048367	shoot system development	BP	0.0274085469690353	PM-ANT//AT5G47170//AT5G46580//KAN//EMB2771//AT3G57250//ATFER3//AtLARP1c//ASE2//AT4G32340//ATHVA22D//AT4G18810//MDO1//AT3G18680//AT3G09730//AT3G09160//AtAVP1//ISPF//CKRC1//CER8//ATLFNR2//COR15B//COR15//AGL20//AT2G41890
GO:0000272	polysaccharide catabolic process	BP	0.0330286616868826	DPE1//AMY3//GWD
GO:0048827	phyllome development	BP	0.0349047266664188	PM-ANT//AT5G47170//KAN//EMB2771//AT3G57250//ATFER3//AtLARP1c//ASE2//AT4G32340//AT3G18680//AT3G09160//AtAVP1//ISPF//CKRC1//COR15B//COR15//AGL20
GO:0072525	pyridine-containing compound biosyntheti...	BP	0.035108146548515	ATPDX2//AtNMNAT
GO:0044272	sulfur compound biosynthetic process	BP	0.036422031166522	bHLH115//ATCYP20-2//DEG8//CS26//ISPF//ATLFNR2//AtPPa1//AT1G22700//ACLA-2//ATGRP-3
GO:0009072	aromatic amino acid family metabolic pro...	BP	0.0370317728354077	AT5G46580//AT3G18680//ISPF//AT1G22700//ATGRP-3//AT2G30695
GO:0000097	sulfur amino acid biosynthetic process	BP	0.0375266172365334	bHLH115//ATCYP20-2//CS26//ISPF//AtPPa1//AT1G22700//ATGRP-3
GO:0009269	response to desiccation	BP	0.0399478018467236	ATHVA22D//ATGRP-3
GO:0009631	cold acclimation	BP	0.0399478018467236	GWD//COR15
GO:0031329	regulation of cellular catabolic process	BP	0.0399478018467236	ATHVA22D//APC10
GO:1901566	organonitrogen compound biosynthetic pro...	BP	0.0409716412766545	bHLH115//ATCYP20-2//AT3G56680//ATPDX2//AtNMNAT//AT5G46580//PUT3//ASE2//AT3G18680//CS26//AT1G72190//ATTSM1//ISPF//CKRC1//AtPPa1//EMB2289//AT1G22700//ATGRP-3//AT2G35390//AT2G30695
GO:0048440	carpel development	BP	0.0411678862294958	AT5G47170//KAN//EMB2771//AT3G57250//AT3G18680//AT3G09160//AGL20
GO:0010150	leaf senescence	BP	0.0412641250713283	AtLARP1c//COR15B//COR15
GO:0009657	plastid organization	BP	0.0444452475558626	AtCEST//DEG8//ATDEF2//ASE2//IM//AT3G18680//ISPF//ATLFNR2//ARC3//AT1G22700//YCF37//AT2G30695
GO:0051302	regulation of cell division	BP	0.047274023810534	CYC2BAT//EMB2771//APC10
GO:0009828	plant-type cell wall loosening	BP	0.0503211115061984	ATEXP24//ATEXP9
GO:0019827	stem cell maintenance	BP	0.0504315662368835	MDO1//CKRC1//AGL20
GO:0048863	stem cell differentiation	BP	0.0504315662368835	MDO1//CKRC1//AGL20
GO:0048864	stem cell development	BP	0.0504315662368835	MDO1//CKRC1//AGL20
GO:0008202	steroid metabolic process	BP	0.0511628044217929	PUT3//ELL1//CKRC1//TT15//AT1G78500
GO:0006720	isoprenoid metabolic process	BP	0.0517770979827314	ATDEF2//ELL1//IM//ATGA2OX8//ATGA2OX2//ISPF//AT1G78500//AT1G22700//CYP707A2//YCF37//GGPS2//AT2G30695
GO:0016126	sterol biosynthetic process	BP	0.0527928064193869	PUT3//ELL1//CKRC1//AT1G78500
GO:0009624	response to nematode	BP	0.0536891514046218	ATCAT6//AT1G59740//ATMYO5
GO:0032875	regulation of DNA endoreduplication	BP	0.055830750321816	EMB2771//APC10
GO:0090329	regulation of DNA-dependent DNA replicat...	BP	0.055830750321816	EMB2771//APC10
GO:0019742	pentacyclic triterpenoid metabolic proce...	BP	0.0615403750436861	ELL1//AT1G78500
GO:0019745	pentacyclic triterpenoid biosynthetic pr...	BP	0.0615403750436861	ELL1//AT1G78500
GO:0051510	regulation of unidimensional cell growth	BP	0.0629492442879186	CYC2BAT//EMB2771//HERK1//APC10
GO:0009108	coenzyme biosynthetic process	BP	0.0634563867378916	AtNMNAT//ISPF//AT1G50000//ACLA-2//GGPS2
GO:0010260	organ senescence	BP	0.0640480488876753	AtLARP1c//COR15B//COR15
GO:0000096	sulfur amino acid metabolic process	BP	0.0660983936454132	bHLH115//ATCYP20-2//CS26//ISPF//AtPPa1//AT1G22700//ATGRP-3
GO:0006790	sulfur compound metabolic process	BP	0.0662530638596295	bHLH115//ATCYP20-2//DEG8//ELL1//CS26//ISPF//ATLFNR2//AtPPa1//AT1G22700//ACLA-2//ATGRP-3
GO:0044283	small molecule biosynthetic process	BP	0.0671318670619024	bHLH115//ATCYP20-2//ATPDX2//AT5G46580//PUT3//ELL1//AT3G18680//CS26//AT1G72190//ISPF//CKRC1//CER8//NIMIN-1//ATLFNR2//AtPPa1//AT1G50000//AT1G78500//AT1G22700//ATGRP-3//AT2G37220//GGPS2//AT2G30695
GO:0016104	triterpenoid biosynthetic process	BP	0.0674389707965401	ELL1//AT1G78500
GO:0006857	oligopeptide transport	BP	0.0711924204225137	ATERF-9//SEL1//AT1G59740//AT1G05700
GO:0015833	peptide transport	BP	0.0711924204225137	ATERF-9//SEL1//AT1G59740//AT1G05700
GO:0022604	regulation of cell morphogenesis	BP	0.0711924204225137	CYC2BAT//EMB2771//HERK1//APC10
GO:0045596	negative regulation of cell differentiat...	BP	0.0714270366845406	MDO1//CKRC1//AGL20
GO:0048366	leaf development	BP	0.073294408796304	ATFER3//AtLARP1c//ASE2//AT4G32340//AtAVP1//ISPF//CKRC1//COR15B//COR15
GO:0006722	triterpenoid metabolic process	BP	0.0735158992744019	ELL1//AT1G78500
GO:0048438	floral whorl development	BP	0.0774716580882209	PM-ANT//AT5G47170//KAN//EMB2771//AT3G57250//AT3G18680//AT3G09160//CKRC1//AGL20//AT2G41890
GO:0000041	transition metal ion transport	BP	0.0782356165864098	COPT1//ATFER3//CYP706A7//GLP4//SEL1//AT2G03200
GO:0007623	circadian rhythm	BP	0.0797192074176933	UVR8//AT5G14550//AT3G01310//AMY3//GWD
GO:0048511	rhythmic process	BP	0.0797192074176933	UVR8//AT5G14550//AT3G01310//AMY3//GWD
GO:0001558	regulation of cell growth	BP	0.0829960391333726	CYC2BAT//EMB2771//HERK1//APC10
GO:0042886	amide transport	BP	0.0829960391333726	ATERF-9//SEL1//AT1G59740//AT1G05700
GO:0016311	dephosphorylation	BP	0.0846905782186518	ATCBL2//AT5G53140//PPH1//PYR1//NIMIN-1//COR15
GO:0048731	system development	BP	0.0857580258493763	EXT13//ATPDX2//COPT1//PM-ANT//AT5G53140//AT5G47170//AT5G46580//KAN//EMB2771//AT3G57250//ATFER3//ELL1//AtLARP1c//ASE2//AT4G32340//ATHVA22D//AT4G18810//EMB1706//ATSPS4F//MDO1//BE1//AT3G18680//AT3G09730//AT3G09160//AtAVP1//ATTSM1//ISPF//CKRC1//CER8//TRFL3//ATLFNR2//TT15//EMB2289//COR15B//COR15//AT2G03200//CYP707A2//AGL20//AT2G41890
GO:1901607	alpha-amino acid biosynthetic process	BP	0.0875771287761969	bHLH115//ATCYP20-2//CS26//AT1G72190//ISPF//AtPPa1//AT1G22700//ATGRP-3
GO:0010310	regulation of hydrogen peroxide metaboli...	BP	0.0899229968599519	ATCBL2//CS26//NIMIN-1//ATLFNR2//COR15
GO:0010017	red or far-red light signaling pathway	BP	0.0927157183292881	COR15//AtPP5
GO:0009755	hormone-mediated signaling pathway	BP	0.0933460112882727	ATHB-5//AT5G58480//ATCBL2//ATERF-9//HERK1//PYR1//AT1G78990//NIMIN-1//ATLFNR2//COR15//PYL4
GO:0009851	auxin biosynthetic process	BP	0.0956835500397693	AtYUC6//CKRC1//ATGRP-3
GO:0006721	terpenoid metabolic process	BP	0.10066803360585	ELL1//IM//ATGA2OX8//ATGA2OX2//ISPF//AT1G78500//CYP707A2
GO:0071489	cellular response to red or far red ligh...	BP	0.106228194544962	COR15//AtPP5
GO:0048316	seed development	BP	0.106847635882517	ATPDX2//AT5G46580//EMB2771//ELL1//EMB1706//BE1//AT3G18680//ATTSM1//CKRC1//TRFL3//TT15//EMB2289//CYP707A2
GO:0001666	response to hypoxia	BP	0.108911263377903	PDC2//ATSPS4F//NIMIN-1
GO:0006694	steroid biosynthetic process	BP	0.109253333379379	PUT3//ELL1//CKRC1//AT1G78500
GO:0016226	iron-sulfur cluster assembly	BP	0.109253333379379	AT5G46580//AT3G18680//AT1G22700//AT2G30695
GO:0031163	metallo-sulfur cluster assembly	BP	0.109253333379379	AT5G46580//AT3G18680//AT1G22700//AT2G30695
GO:0009725	response to hormone	BP	0.111202000528036	ATHB-5//AT5G58480//ATCBL2//CIPK20//ATERF-9//HERK1//AT4G34750//ATHVA22D//PYR1//AT1G78990//AT3G12830//ATGA2OX2//CKRC1//NIMIN-1//ATLFNR2//COR15//ATGRP-3//AT2G37220//PYL4//AGL20
GO:0009414	response to water deprivation	BP	0.111746921828175	AtCEST//DREB2//ATHVA22D//AtAVP1//COR15B//COR15//ATGRP-3
GO:0044707	single-multicellular organism process	BP	0.111785791730379	ATRAD51//EXT13//ATPDX2//COPT1//PM-ANT//AtNMNAT//AT5G53140//AT5G47170//AT5G46580//KAN//CYC2BAT//EMB2771//AT3G62970//AT3G57250//ATFER3//ELL1//HERK1//AtLARP1c//ASE2//AT4G32340//AT4G27660//ATHVA22D//IM//AT4G18810//PYR1//EMB1706//ATSPS4F//MDO1//BE1//AT3G18680//anac057//AT3G09730//ATDFC//AT3G09160//AtAVP1//ATTSM1//ISPF//CKRC1//CER8//TRFL3//ATLFNR2//TT15//EMB2289//COR15B//COR15//AT2G03200//CYP707A2//AGL20//AT2G41890
GO:0009894	regulation of catabolic process	BP	0.113171457676439	ATHVA22D//APC10
GO:0036293	response to decreased oxygen levels	BP	0.118100698288508	PDC2//ATSPS4F//NIMIN-1
GO:0009415	response to water	BP	0.121057138182173	AtCEST//DREB2//ATHVA22D//AtAVP1//COR15B//COR15//ATGRP-3
GO:0070482	response to oxygen levels	BP	0.122800580262287	PDC2//ATSPS4F//NIMIN-1
GO:0051188	cofactor biosynthetic process	BP	0.123445661098166	AT3G56680//AtNMNAT//ISPF//AT1G50000//ACLA-2//AT2G35390//GGPS2
GO:0032870	cellular response to hormone stimulus	BP	0.124506913157067	ATHB-5//AT5G58480//ATCBL2//ATERF-9//HERK1//PYR1//AT1G78990//NIMIN-1//ATLFNR2//COR15//PYL4
GO:0010154	fruit development	BP	0.125245778268898	ATPDX2//AT5G46580//EMB2771//ELL1//EMB1706//BE1//AT3G18680//ATTSM1//CKRC1//TRFL3//TT15//EMB2289//CYP707A2
GO:0007275	multicellular organismal development	BP	0.125266337998225	ATRAD51//EXT13//ATPDX2//COPT1//PM-ANT//AtNMNAT//AT5G53140//AT5G47170//AT5G46580//KAN//CYC2BAT//EMB2771//AT3G62970//AT3G57250//ATFER3//ELL1//HERK1//AtLARP1c//ASE2//AT4G32340//AT4G27660//ATHVA22D//AT4G18810//PYR1//EMB1706//ATSPS4F//MDO1//BE1//AT3G18680//anac057//AT3G09730//ATDFC//AT3G09160//AtAVP1//ATTSM1//ISPF//CKRC1//CER8//TRFL3//ATLFNR2//TT15//EMB2289//COR15B//COR15//AT2G03200//CYP707A2//AGL20//AT2G41890"
GO:0035303	regulation of dephosphorylation	BP	0.127330507653522	ATCBL2//PYR1//NIMIN-1//COR15
GO:0048582	positive regulation of post-embryonic de...	BP	0.127390557961605	CYC2BAT//AGL20
GO:0000165	MAPK cascade	BP	0.130569526583286	ATCBL2//CRK24//NIMIN-1//ATLFNR2//COR15
GO:0023014	signal transduction by phosphorylation	BP	0.130569526583286	ATCBL2//CRK24//NIMIN-1//ATLFNR2//COR15
GO:0001101	response to acid chemical	BP	0.130605194477189	ATHB-5//ATCBL2//CIPK20//AtCEST//DREB2//ATHVA22D//PYR1//CYP706A7//GLP4//AtAVP1//ATGA2OX2//NIMIN-1//ATLFNR2//SEL1//COR15B//COR15//ATGRP-3//AT2G37220//PYL4//AGL20
GO:0022603	regulation of anatomical structure morph...	BP	0.131088719838905	CYC2BAT//EMB2771//HERK1//APC10
GO:0071495	cellular response to endogenous stimulus	BP	0.131730377021466	ATHB-5//AT5G58480//ATCBL2//ATERF-9//HERK1//PYR1//AT1G78990//NIMIN-1//ATLFNR2//COR15//PYL4
GO:0009850	auxin metabolic process	BP	0.132400343995138	AtYUC6//CKRC1//ATGRP-3
GO:0010087	phloem or xylem histogenesis	BP	0.132400343995138	CKRC1//ATMYO5//APC10
GO:0010016	shoot system morphogenesis	BP	0.132535533883287	AT5G46580//ASE2//AT4G32340//AT4G18810//ISPF//CKRC1//CER8//ATLFNR2//AT2G41890