GOID	TERM	ONTOLOGY	pValue	Genes
GO:0010212	response to ionizing radiation	BP	0.00030390284655473	ATRAD51//XRI//GMI1//TRFL10//APP//PARP1//CHR8
GO:0010332	response to gamma radiation	BP	0.000578937523829907	ATRAD51//XRI//GMI1//TRFL10//APP//CHR8
GO:0032269	negative regulation of cellular protein ...	BP	0.0021197660515852	AT2G26390//DCP5//CYCD3;3//CDKB2;1//CKS2
GO:0051248	negative regulation of protein metabolic...	BP	0.0021197660515852	AT2G26390//DCP5//CYCD3;3//CDKB2;1//CKS2
GO:0045736	negative regulation of cyclin-dependent ...	BP	0.00294595922201012	CYCD3;3//CDKB2;1//CKS2
GO:0006486	protein glycosylation	BP	0.00308823160012295	DCP5//APP//ATCDC48//IBM1//AT1G34300//ACO3//PARP1
GO:0009101	glycoprotein biosynthetic process	BP	0.00308823160012295	DCP5//APP//ATCDC48//IBM1//AT1G34300//ACO3//PARP1
GO:0043413	macromolecule glycosylation	BP	0.00308823160012295	DCP5//APP//ATCDC48//IBM1//AT1G34300//ACO3//PARP1
GO:0006302	double-strand break repair	BP	0.00323759441456698	ATRAD51//XRI//GMI1//TRFL10//APP//PARP1
GO:0009100	glycoprotein metabolic process	BP	0.00349367674055691	DCP5//APP//ATCDC48//IBM1//AT1G34300//ACO3//PARP1
GO:0070085	glycosylation	BP	0.0037110081288941	DCP5//APP//ATCDC48//IBM1//AT1G34300//ACO3//PARP1
GO:0006259	DNA metabolic process	BP	0.0047646481617492	ATRAD51//ROS3//XRI//GMI1//TRFL10//HTA11//FBL17//CYCD3;3//APP//AT3G20010//ATTSO2//IBM1//CDKB2;1//AGO1//CKS2//PARP1//POLD4//CHR8
GO:0009415	response to water	BP	0.004928658977163	GPDHC1//ATERF-1//AtGolS2//ATPLC//AAP6//PMZ//ANAC053//RGLG1//CDI3//AHK1//cdf3//ATWRKY33
GO:0010605	negative regulation of macromolecule met...	BP	0.00703003876021603	AT2G26390//DCP5//ATRAD51//AT1G77310//ATHDA6//APRR1//ROS3//CYCD3;3//AT3G20010//IBM1//CDKB2;1//ESP1//AGO1//CKS2//PARP1
GO:0048598	embryonic morphogenesis	BP	0.00724897185627942	ATHB13//TAR1//BSK12
GO:0009628	response to abiotic stimulus	BP	0.00778789663751554	AT2G23270//AtMYB70//GPDHC1//ATERF-1//AtGolS2//AAP2//ATRAD51//AGL2//DGR2//ATHDA6//APRR1//ATPLC//ATFIP1[V]//GLT1//EXL3//AAP6//KCS21//XRI//GMI1//BHLH134//AT-HSP17.6A//AGL25//TRFL10//AT5G02480//ABCB20//HTA11//ATROPGEF9//ACS6//APP//DRT100//PMZ//AT3G27210//AT3G26720//ANAC053//RGLG1//CDI3//AGO1//ACO3//PARP1//AHK1//TNO1//CHR8//cdf3//ATWRKY33//WLIM2a
GO:0010048	vernalization response	BP	0.00779498105849812	AGL2//AGL25//ABCB20//ATROPGEF9//AT3G26720
GO:0045786	negative regulation of cell cycle	BP	0.00839547080835288	CYCD3;3//CDKB2;1//CKS2
GO:0006487	protein N-linked glycosylation	BP	0.0093036997352757	DCP5//IBM1//AT1G34300//ACO3
GO:0006813	potassium ion transport	BP	0.00964243792844926	ATKCO2//ATKEA6//CPK24
GO:0022411	cellular component disassembly	BP	0.00964243792844926	QRT2//ATSRG1//ATELF5A-1
GO:0071901	negative regulation of protein serine/th...	BP	0.010991536481191	CYCD3;3//CDKB2;1//CKS2
GO:0006469	negative regulation of protein kinase ac...	BP	0.0124441780664547	CYCD3;3//CDKB2;1//CKS2
GO:0033673	negative regulation of kinase activity	BP	0.0124441780664547	CYCD3;3//CDKB2;1//CKS2
GO:0051348	negative regulation of transferase activ...	BP	0.0124441780664547	CYCD3;3//CDKB2;1//CKS2
GO:0044728	DNA methylation or demethylation	BP	0.013805786314278	ATRAD51//ROS3//HTA11//AT3G20010//IBM1//AGO1//PARP1
GO:0001933	negative regulation of protein phosphory...	BP	0.0140015353405045	CYCD3;3//CDKB2;1//CKS2
GO:0010563	negative regulation of phosphorus metabo...	BP	0.0140015353405045	CYCD3;3//CDKB2;1//CKS2
GO:0042326	negative regulation of phosphorylation	BP	0.0140015353405045	CYCD3;3//CDKB2;1//CKS2
GO:0045936	negative regulation of phosphate metabol...	BP	0.0140015353405045	CYCD3;3//CDKB2;1//CKS2
GO:0006304	DNA modification	BP	0.0144032626022712	ATRAD51//ROS3//HTA11//AT3G20010//IBM1//AGO1//PARP1
GO:0005975	carbohydrate metabolic process	BP	0.0145981244227074	GPDHC1//AtGolS2//DCP5//AT5G20950//ATPDI2//GLT1//AT5G35760//AGP25//ATMIPS3//AT3G59850//AT3G52500//APP//AtGH9B13//TPPD//AT3G24330//AT3G26720//BGLU43//AT3G15980//QRT2//ATCDC48//AT3G07320//IBM1//AT1G80170//AT1G34300//ACO3//AtCWIN4//PARP1//ATXTH17//BGLU5//AT1G09910//AT2G16980//WLIM2a
GO:0006281	DNA repair	BP	0.0157203083529397	ATRAD51//XRI//GMI1//TRFL10//APP//ATTSO2//PARP1//CHR8
GO:0014070	response to organic cyclic compound	BP	0.0180060572536613	ATPLC//TRFL10//BRH1//AtMYB17//ANAC076//AtTic20-IV//PMZ//AT3G20010//ATWRKY54//ANAC053//IBM1//CDKB2;1//ESP1//AGO1//ATGSTU25//PARP1//ATWRKY33
GO:0031400	negative regulation of protein modificat...	BP	0.0193102974705237	CYCD3;3//CDKB2;1//CKS2
GO:0040029	regulation of gene expression, epigeneti...	BP	0.0200388851713498	ATRAD51//AT1G77310//ATHDA6//ROS3//HTA11//AT3G20010//IBM1//CDKB2;1//ESP1//AGO1//PARP1
GO:0048653	anther development	BP	0.0203242499082726	AT4G33040//SRF8//QRT2//AT1G06830
GO:0016458	gene silencing	BP	0.0209218475483905	ATRAD51//AT1G77310//ATHDA6//ROS3//AT3G20010//IBM1//CDKB2;1//ESP1//AGO1//PARP1
GO:0010769	regulation of cell morphogenesis involve...	BP	0.0220267556121166	ATROPGEF9//CPK24
GO:0080092	regulation of pollen tube growth	BP	0.0220267556121166	ATROPGEF9//CPK24
GO:0010039	response to iron ion	BP	0.0233848774247766	ATMIPS3//ACS6//ACO3
GO:0009555	pollen development	BP	0.0252758543511488	ATRAD51//XRI//FBL17//AT4G08670//CRCK2//QRT2//IBM1//PARP1
GO:0009414	response to water deprivation	BP	0.025283049137454	ATERF-1//AtGolS2//ATPLC//AAP6//PMZ//ANAC053//RGLG1//AHK1//cdf3//ATWRKY33
GO:0009892	negative regulation of metabolic process	BP	0.0257297267682964	AT2G26390//DCP5//ATRAD51//AT1G77310//ATHDA6//APRR1//ROS3//CYCD3;3//AT3G20010//IBM1//CDKB2;1//ESP1//AGO1//CKS2//PARP1
GO:0060284	regulation of cell development	BP	0.0260645722004721	ATROPGEF9//CPK24
GO:0048443	stamen development	BP	0.0270350870808606	AGL2//AtMYB17//AT4G33040//SRF8//QRT2//AT1G06830
GO:0048466	androecium development	BP	0.0270350870808606	AGL2//AtMYB17//AT4G33040//SRF8//QRT2//AT1G06830
GO:0009834	plant-type secondary cell wall biogenesi...	BP	0.0278888443664347	AO1//AtFLA12//ANAC010
GO:0010440	stomatal lineage progression	BP	0.0278888443664347	CYCD3;3//CDKB2;1//CKS2
GO:0031050	dsRNA fragmentation	BP	0.029465673633719	AT3G20010//IBM1//ESP1//AGO1//PARP1
GO:0043331	response to dsRNA	BP	0.029465673633719	AT3G20010//IBM1//ESP1//AGO1//PARP1
GO:0070918	production of small RNA involved in gene...	BP	0.029465673633719	AT3G20010//IBM1//ESP1//AGO1//PARP1
GO:0071359	cellular response to dsRNA	BP	0.029465673633719	AT3G20010//IBM1//ESP1//AGO1//PARP1
GO:0010286	heat acclimation	BP	0.0296537858841593	AT-HSP17.6A//PMZ//AT3G27210//ATWRKY33
GO:0000079	regulation of cyclin-dependent protein s...	BP	0.0303012998154241	CYCD3;3//CDKB2;1//CKS2
GO:0006338	chromatin remodeling	BP	0.0303760370726074	HTA11//AT3G20010
GO:0048826	cotyledon morphogenesis	BP	0.0303760370726074	ATHB13//TAR1
GO:0055072	iron ion homeostasis	BP	0.0303760370726074	ATMIPS3//ACO3
GO:0051246	regulation of protein metabolic process	BP	0.0313259396045935	AT2G26390//DCP5//ATPLC//AtCDC48B//CYCD3;3//CDKB2;1//ATELF5A-1//CKS2
GO:0010629	negative regulation of gene expression	BP	0.0321783109795315	DCP5//ATRAD51//AT1G77310//ATHDA6//APRR1//ROS3//AT3G20010//IBM1//CDKB2;1//ESP1//AGO1//PARP1
GO:0010583	response to cyclopentenone	BP	0.0337497059591007	AtTic20-IV//PMZ//ANAC053//CDKB2;1//ATGSTU25
GO:0006974	cellular response to DNA damage stimulus	BP	0.0341993949302244	ATRAD51//XRI//GMI1//TRFL10//APP//ATTSO2//PARP1//CHR8
GO:0010260	organ senescence	BP	0.0390792939984151	UGT76B1//ATWRKY54//ANAC053//ATSRG1
GO:0032501	multicellular organismal process	BP	0.0391227461718613	ATRAD51//AT3G56750//AGL2//DGR2//ATHDA6//APRR1//KCS21//XRI//ABIL3//BHLH134//ATMIPS3//AGL25//AT5G09760//ATPA2//AtMYB17//ABCB20//HTA11//FBL17//CYCD3;3//AT4G33040//SRF8//AtDSEL//ATROPGEF9//AT4G08670//CRCK2//UGT76B1//AT3G20010//ATWRKY54//ATTSO2//AT3G26720//AT3G02810//QRT2//ATCDC48//ANAC053//IBM1//CDI3//CDKB2;1//ATHB13//AT1G06830//ANAC010//AGO1//ATSRG1//AT1G34300//AT1G79420//TAR1//CPK24//AT2G42640//BSK12//CKS2//PARP1//AHK1//ATMLO7//MEE11//AT2G45870//WLIM2a
GO:0010608	posttranscriptional regulation of gene e...	BP	0.04070861814741	DCP5//ATHDA6//AT3G20010//ESP1//AGO1//ATELF5A-1//PARP1
GO:0006305	DNA alkylation	BP	0.0407612832930716	ATRAD51//HTA11//AT3G20010//IBM1//AGO1//PARP1
GO:0006306	DNA methylation	BP	0.0407612832930716	ATRAD51//HTA11//AT3G20010//IBM1//AGO1//PARP1
GO:0009616	virus induced gene silencing	BP	0.0411470476885732	AT3G56750//AT3G20010//AGO1//PARP1
GO:0052018	modulation by symbiont of RNA levels in ...	BP	0.0411470476885732	AT3G56750//AT3G20010//AGO1//PARP1
GO:0052249	modulation of RNA levels in other organi...	BP	0.0411470476885732	AT3G56750//AT3G20010//AGO1//PARP1
GO:0048856	anatomical structure development	BP	0.041723125030187	ATRAD51//AGL2//DGR2//ATHDA6//APRR1//KCS21//XRI//ABIL3//BHLH134//ATMIPS3//AGL25//AT5G09760//ATPA2//AtMYB17//ABCB20//HTA11//FBL17//CYCD3;3//ANAC076//AT4G33040//SRF8//ATROPGEF9//AT4G08670//AtGH9B13//CRCK2//UGT76B1//AT3G20010//ATWRKY54//AT3G26720//AT3G02810//QRT2//ATCDC48//ANAC053//IBM1//CDKB2;1//ATHB13//AT1G06830//ANAC010//AtPERK11//AGO1//ATSRG1//ATELF5A-1//AT1G79420//TAR1//CPK24//AT2G42640//BSK12//CKS2//PARP1//AHK1//MEE11//AT2G45870//WLIM2a
GO:0098586	cellular response to virus	BP	0.043275823901988	AT3G56750//AT3G20010//AGO1//PARP1
GO:0010050	vegetative phase change	BP	0.0439452378046352	AT3G56750//AT3G20010//AGO1
GO:0050801	ion homeostasis	BP	0.0451492019621065	AAP2//ATCHX18//ATMIPS3//BRH1//CDI3//ACO3
GO:0050896	response to stimulus	BP	0.045448609616126	AT2G23270//AtMYB70//GPDHC1//ATERF-1//AtGolS2//AAP2//ATRAD51//AT5G20950//AT3G56750//AT1G77310//AGL2//DGR2//CIPK25//ATHDA6//APRR1//ATPDI2//ATPLC//ATFIP1[V]//GLT1//EXL3//AAP6//KCS21//XRI//RPT4A//LCR80//GMI1//BHLH134//AT-HSP17.6A//ATMIPS3//AGL25//AT5G07580//ATPA2//TRFL10//AT5G02480//BRH1//AtMYB17//ABCB20//HTA11//AtCDC48B//ANAC076//ARAC7//SRF8//ATROPGEF9//ACS6//AT4G09930//AtTic20-IV//APP//DRT100//UGT76B1//PMZ//AT3G20010//AT3G27210//AT3G14460//ATWRKY54//ATTSO2//AT3G26720//AT3G02810//ATCDC48//ATRAB18C//ANAC053//RGLG1//IBM1//ATBSMT1//CDI3//ATIRT3//CDKB2;1//AT1G67870//ESP1//AT1G73620//AtRLP15//ATHB13//AGO1//ATSRG1//ATGSTU25//AT1G05710//ACO3//PARP1//AHK1//ATMLO7//TNO1//ALS3//CHR8//AT2G28790//cdf3//ATWRKY33//AT2G02620//WLIM2a
GO:0035821	modification of morphology or physiology...	BP	0.0500277690320795	AT3G56750//AT3G20010//AGO1//PARP1
GO:0044003	modification by symbiont of host morphol...	BP	0.0500277690320795	AT3G56750//AT3G20010//AGO1//PARP1
GO:0051817	modification of morphology or physiology...	BP	0.0500277690320795	AT3G56750//AT3G20010//AGO1//PARP1
GO:0032502	developmental process	BP	0.0507923147840513	ATRAD51//AT3G56750//AGL2//DGR2//ATHDA6//APRR1//GLT1//KCS21//XRI//ABIL3//BHLH134//ATMIPS3//AGL25//AT5G09760//ATPA2//AtMYB17//ABCB20//HTA11//FBL17//CYCD3;3//ANAC076//AT4G33040//SRF8//AtDSEL//ATROPGEF9//AT4G08670//AtGH9B13//CRCK2//UGT76B1//AT3G20010//ATWRKY54//ATTSO2//AT3G26720//AT3G02810//QRT2//ATCDC48//ANAC053//IBM1//CDKB2;1//ATHB13//AT1G06830//ANAC010//AtPERK11//AGO1//ATSRG1//ATELF5A-1//AT1G79420//TAR1//CPK24//AT2G42640//BSK12//CKS2//PARP1//AHK1//MEE11//AT2G45870//WLIM2a
GO:0006869	lipid transport	BP	0.0526456555715829	AT4G08670//AT4G08530//AT1G74150//AtXYP2//cdf3
GO:0051726	regulation of cell cycle	BP	0.0528659672349629	ATRAD51//CYCD3;3//AT3G20010//ATTSO2//CDKB2;1//CKS2//PARP1
GO:0000724	double-strand break repair via homologou...	BP	0.0533641332105033	ATRAD51//GMI1//PARP1
GO:0000725	recombinational repair	BP	0.0533641332105033	ATRAD51//GMI1//PARP1
GO:0071554	cell wall organization or biogenesis	BP	0.0534274566519069	AO1//AGL2//AtFLA12//AGP25//AT5G09760//ATROPGEF9//AtGH9B13//AT3G26720//AT3G15680//QRT2//AT1G70630//ANAC010//AGO1//ATSRG1//FUT8//ATXTH17//AT2G28790//AT2G16980//WLIM2a
GO:0071900	regulation of protein serine/threonine k...	BP	0.0567021634363845	CYCD3;3//CDKB2;1//CKS2
GO:0044707	single-multicellular organism process	BP	0.0581839379383883	ATRAD51//AT3G56750//AGL2//DGR2//ATHDA6//APRR1//KCS21//XRI//ABIL3//BHLH134//ATMIPS3//AGL25//AT5G09760//ATPA2//AtMYB17//ABCB20//HTA11//FBL17//CYCD3;3//AT4G33040//SRF8//AtDSEL//AT4G08670//CRCK2//UGT76B1//AT3G20010//ATWRKY54//ATTSO2//AT3G26720//QRT2//ATCDC48//ANAC053//IBM1//CDI3//CDKB2;1//ATHB13//AT1G06830//ANAC010//AGO1//ATSRG1//AT1G79420//TAR1//AT2G42640//BSK12//CKS2//PARP1//AHK1//MEE11//AT2G45870//WLIM2a"
GO:0006260	DNA replication	BP	0.0593781748029484	ATRAD51//FBL17//CYCD3;3//ATTSO2//CDKB2;1//CKS2//PARP1//POLD4
GO:0009624	response to nematode	BP	0.0601370711920619	ATPA2//SRF8//ATIRT3
GO:1901699	cellular response to nitrogen compound	BP	0.0607801469065936	AT3G20010//IBM1//ESP1//AGO1//PARP1
GO:0048519	negative regulation of biological proces...	BP	0.0612375806739682	AT2G26390//DCP5//ATRAD51//AT1G77310//ATHDA6//APRR1//ATPLC//ROS3//AGL25//CYCD3;3//AtDSEL//AT3G20010//ATWRKY54//RGLG1//IBM1//CDKB2;1//ESP1//AGO1//AT1G79420//CKS2//PARP1//ATWRKY33
GO:0044087	regulation of cellular component biogene...	BP	0.0624903816481801	DCP5//AT3G26720//ANAC010//AGO1
GO:0051701	interaction with host	BP	0.0624903816481801	AT3G56750//AT3G20010//AGO1//PARP1
GO:0043549	regulation of kinase activity	BP	0.0636673505158234	CYCD3;3//CDKB2;1//CKS2
GO:0045859	regulation of protein kinase activity	BP	0.0636673505158234	CYCD3;3//CDKB2;1//CKS2
GO:0051338	regulation of transferase activity	BP	0.0636673505158234	CYCD3;3//CDKB2;1//CKS2
GO:0006950	response to stress	BP	0.0667485812209388	AT2G23270//GPDHC1//ATERF-1//AtGolS2//AAP2//ATRAD51//AT5G20950//AT3G56750//AT1G77310//AGL2//CIPK25//ATHDA6//ATPDI2//ATPLC//GLT1//AAP6//KCS21//XRI//RPT4A//LCR80//GMI1//AT-HSP17.6A//ATMIPS3//AGL25//ATPA2//TRFL10//AT5G02480//ABCB20//HTA11//ATROPGEF9//ACS6//APP//UGT76B1//PMZ//AT3G20010//AT3G27210//AT3G14460//ATWRKY54//ATTSO2//AT3G26720//ATCDC48//ANAC053//RGLG1//ATBSMT1//CDI3//ATIRT3//AT1G67870//AGO1//ACO3//PARP1//AHK1//ATMLO7//TNO1//CHR8//cdf3//ATWRKY33
GO:0032268	regulation of cellular protein metabolic...	BP	0.0670909108959212	AT2G26390//DCP5//ATPLC//CYCD3;3//CDKB2;1//ATELF5A-1//CKS2
GO:0042752	regulation of circadian rhythm	BP	0.0671445025058193	APRR1//AGL25
GO:0043473	pigmentation	BP	0.0678925586497133	AGL2//AGL25//ABCB20//WLIM2a
GO:0043476	pigment accumulation	BP	0.0678925586497133	AGL2//AGL25//ABCB20//WLIM2a