GOID TERM ONTOLOGY pValue Genes GO:0009637 response to blue light BP 0.000204568632647843 ARF7//AT5G44680//FHL//AT3G19850//5PTASE13//HY3 GO:0010583 response to cyclopentenone BP 0.00157188657181695 IAA14//IAA29//ATEXPB3//DHAR2//anac032//UGT1//ATGSTU1//ATGSTU7 GO:0048527 lateral root development BP 0.00345232890526349 CLEL//IAA14//ARF7//CLEL//MYB77//ATGSTU17 GO:0048878 chemical homeostasis BP 0.00367232425761121 ATSOS3//AST68//SRS2//ATGSR2//ATBG1//ATGER1//ATNHX6//5PTASE13//HY3 GO:0048528 post-embryonic root development BP 0.00559291113063506 CLEL//IAA14//ARF7//CLEL//MYB77//ATGSTU17 GO:0010155 regulation of proton transport BP 0.00817601177051994 AT5G44680//AT3G19850//HY3 GO:0019748 secondary metabolic process BP 0.00888231840860047 ATLAC17//AST68//AT3G45160//ATCAD7//DHAR2//ATGSR2//anac032//IGMT1//UGT1//CYP79B3//BGLU46//ATGSTU17//ATGSTU1//ATGSTU7 GO:0042545 cell wall modification BP 0.009026651296057 BGAL6//PME5//BGLU30//ATEXPB3//ATCYSD1//BPE//5PTASE13//CYP79B3 GO:0009687 abscisic acid metabolic process BP 0.00963240552040597 AT5G53770//ATBG1//HY3 GO:0043288 apocarotenoid metabolic process BP 0.00963240552040597 AT5G53770//ATBG1//HY3 GO:1902644 tertiary alcohol metabolic process BP 0.00963240552040597 AT5G53770//ATBG1//HY3 GO:0009404 toxin metabolic process BP 0.0120053604461056 DHAR2//anac032//UGT1//CYP79B3//ATGSTU17//ATGSTU1//ATGSTU7 GO:0051049 regulation of transport BP 0.0147998158134613 CLEL//CLEL//AT5G44680//AT3G19850//HY3 GO:0006714 sesquiterpenoid metabolic process BP 0.014859116784924 AT5G53770//ATBG1//HY3 GO:0009809 lignin biosynthetic process BP 0.0168933094747657 ATLAC17//ATCAD7//BGLU46 GO:0042744 hydrogen peroxide catabolic process BP 0.0168933094747657 AT5G61290//AT5G07800//ATGSR2 GO:0009827 plant-type cell wall modification BP 0.0192979451132219 BGAL6//BGLU30//ATEXPB3//BPE//5PTASE13 GO:0019344 cysteine biosynthetic process BP 0.0192979451132219 AST68//AT3G19400//ATCYSD1//AT1G76520//CYP79B3 GO:0010033 response to organic substance BP 0.0205761519543914 XBAT34//IAA14//atnudt21//ARF7//KNAT3//TGA1//MAKR6//AT2353//ATATE1//BGLU30//ATBZIP61//MYB77//DIN11//AT4G39670//ACS8//SRS2//IAA29//ATEXPB3//CRK19//AKT2//ADOF1//DHAR2//ATGSR2//AT3G05640//VPS60.1//AFP4//ATBG1//anac032//COR413-TM1//IAA6//BPE//UGT1//5PTASE13//ATGSTU17//BP80-3;3//HY3//ATGSTU1//ATGSTU7 GO:0071554 cell wall organization or biogenesis BP 0.0208346981818954 BGAL6//ATLAC17//AT5G48740//PME5//BGLU30//ATEXPB3//AT4G08160//AT3G05910//ATCYSD1//AT1G79620//XXT4//BPE//UGT1//5PTASE13//TBL30//CYP79B3 GO:0055080 cation homeostasis BP 0.0217987873496157 ATSOS3//AST68//ATGSR2//ATGER1//ATNHX6//HY3 GO:0006534 cysteine metabolic process BP 0.0218504927250602 AST68//AT3G19400//ATCYSD1//AT1G76520//CYP79B3 GO:0010646 regulation of cell communication BP 0.0218504927250602 SRS2//AT4G18593//AFP4//ATBG1//ATSPX3 GO:0030003 cellular cation homeostasis BP 0.0218504927250602 ATSOS3//AST68//ATGSR2//ATGER1//HY3 GO:0014070 response to organic cyclic compound BP 0.0223063363806766 XBAT34//IAA14//ARF7//TGA1//MAKR6//MYB77//AT4G39670//IAA29//ATEXPB3//CRK19//DHAR2//VPS60.1//anac032//UGT1//ATGSTU1//ATGSTU7 GO:0009070 serine family amino acid biosynthetic pr... BP 0.0246133512924707 AST68//AT3G19400//ATCYSD1//AT1G76520//CYP79B3 GO:0010647 positive regulation of cell communicatio... BP 0.0247301058054765 ATBG1//ATSPX3 GO:0055067 monovalent inorganic cation homeostasis BP 0.0247301058054765 ATSOS3//ATNHX6 GO:0072348 sulfur compound transport BP 0.0247301058054765 AST68//AST56 GO:0000097 sulfur amino acid biosynthetic process BP 0.0252864003468393 AST68//AT3G19400//ATCYSD1//AT1G76520//CYP79B3//AT1G05150 GO:0006873 cellular ion homeostasis BP 0.026075309196281 ATSOS3//AST68//ATGSR2//ATGER1//HY3 GO:0007167 enzyme linked receptor protein signaling... BP 0.026075309196281 RLK//AT3G57830//PRK3//AT1G79620//EVR GO:0007169 transmembrane receptor protein tyrosine ... BP 0.026075309196281 RLK//AT3G57830//PRK3//AT1G79620//EVR GO:0009407 toxin catabolic process BP 0.0278075808862826 DHAR2//anac032//UGT1//ATGSTU17//ATGSTU1//ATGSTU7 GO:0090487 secondary metabolite catabolic process BP 0.0278075808862826 DHAR2//anac032//UGT1//ATGSTU17//ATGSTU1//ATGSTU7 GO:0009416 response to light stimulus BP 0.0284057616279258 XBAT34//ARF7//KNAT3//AT2353//AT5G47800//AT5G44680//FHL//BGLU30//DIN11//IAA29//AT3G19850//AT3G08660//IAA6//AT1G54050//5PTASE13//ATGSTU17//HY3//CKA3 GO:0032101 regulation of response to external stimu... BP 0.0297331452155058 CYP79B3//ATSPX3 GO:0055082 cellular chemical homeostasis BP 0.0307903488320432 ATSOS3//AST68//ATGSR2//ATGER1//HY3 GO:0048583 regulation of response to stimulus BP 0.0342603063912355 XBAT34//AT4G39670//SRS2//AT4G18593//VPS60.1//AFP4//ATBG1//EVR//CYP79B3//ATGSTU17//HY3//ATSPX3//CKA3 GO:0050801 ion homeostasis BP 0.0348225602304268 ATSOS3//AST68//ATGSR2//ATGER1//ATNHX6//HY3 GO:0010252 auxin homeostasis BP 0.0350995779981965 SRS2//5PTASE13 GO:0010218 response to far red light BP 0.0352875845124914 FHL//IAA29//HY3 GO:1901607 alpha-amino acid biosynthetic process BP 0.0372517270552488 AST68//ACS8//ATGSR2//AT3G19400//ATCYSD1//AT1G76520//CYP79B3//AT1G05150 GO:0032879 regulation of localization BP 0.0378633893127457 CLEL//CLEL//AT5G44680//AT3G19850//HY3 GO:0042537 benzene-containing compound metabolic pr... BP 0.0411914465354571 XBAT34//AT5G43910//AT4G39670//UGT1//BP80-3;3//ATGSTU1 GO:0032787 monocarboxylic acid metabolic process BP 0.045113619395009 XBAT34//AT5G53770//AT5G43910//AST68//ATGA20OX3//ATATE1//AT4G39670//ACS8//ATGSR2//AT3G23600//ATMES17//ATBG1//BPE//UGT1//CYP79B3//BP80-3;3//HY3//ATGSTU1 GO:0071669 plant-type cell wall organization or bio... BP 0.0451432351073478 BGAL6//ATLAC17//BGLU30//ATEXPB3//AT4G08160//BPE//UGT1//5PTASE13 GO:0009808 lignin metabolic process BP 0.0453707620951352 ATLAC17//ATCAD7//BGLU46 GO:0048584 positive regulation of response to stimu... BP 0.0453707620951352 ATBG1//EVR//ATSPX3 GO:0006986 response to unfolded protein BP 0.0458567993330154 XBAT34//TGA1//ATBZIP61//AT4G39670//VPS60.1 GO:0030968 endoplasmic reticulum unfolded protein r... BP 0.0458567993330154 XBAT34//TGA1//ATBZIP61//AT4G39670//VPS60.1 GO:0034620 cellular response to unfolded protein BP 0.0458567993330154 XBAT34//TGA1//ATBZIP61//AT4G39670//VPS60.1 GO:0035967 cellular response to topologically incor... BP 0.0458567993330154 XBAT34//TGA1//ATBZIP61//AT4G39670//VPS60.1 GO:0006468 protein phosphorylation BP 0.0460144448571061 RLK//AT5G48740//PME5//AT5G44680//AT3G57830//PRK3//AT4G34500//NFD1//CRK19//AT4G18593//AT3G19850//AT1G01540//AT1G79620//AT1G11410//EVR//ATCYCD1;1//AT2G16750//HY3//CKA3 GO:0001933 negative regulation of protein phosphory... BP 0.0468386588899747 AT4G18593//ATCYCD1;1 GO:0006469 negative regulation of protein kinase ac... BP 0.0468386588899747 AT4G18593//ATCYCD1;1 GO:0033673 negative regulation of kinase activity BP 0.0468386588899747 AT4G18593//ATCYCD1;1 GO:0042326 negative regulation of phosphorylation BP 0.0468386588899747 AT4G18593//ATCYCD1;1 GO:0051348 negative regulation of transferase activ... BP 0.0468386588899747 AT4G18593//ATCYCD1;1 GO:0071901 negative regulation of protein serine/th... BP 0.0468386588899747 AT4G18593//ATCYCD1;1 GO:0007166 cell surface receptor signaling pathway BP 0.0480008432175595 RLK//AT3G57830//PRK3//AT1G79620//EVR GO:0033993 response to lipid BP 0.0484321698769875 IAA14//ARF7//MAKR6//AT2353//ATATE1//AT4G39670//SRS2//AKT2//AT3G05640//VPS60.1//AFP4//ATBG1//COR413-TM1//5PTASE13 GO:0007568 aging BP 0.0487054026029217 TGA1//ATATE1//BGLU30//DIN11 GO:0046777 protein autophosphorylation BP 0.0487054026029217 AT5G44680//AT3G19850//AT1G01540//HY3 GO:0080167 response to karrikin BP 0.0487054026029217 AT2353//ATMSRA2//AT4G02940//ATGSTU17 GO:0043436 oxoacid metabolic process BP 0.0488949169582225 XBAT34//AT5G53770//AT2353//AT5G43910//AST68//ATGA20OX3//ATATE1//AT3G45160//AT4G39670//ACS8//ATGSR2//AT3G19400//AT3G23600//ATMES17//ATCYSD1//ATBG1//AT1G76520//IGMT1//BPE//UGT1//CYP79B3//AT1G05150//BP80-3;3//HY3//ATGSTU1 GO:0009968 negative regulation of signal transducti... BP 0.0490159292955189 SRS2//AT4G18593//AFP4 GO:0010648 negative regulation of cell communicatio... BP 0.0490159292955189 SRS2//AT4G18593//AFP4 GO:0023057 negative regulation of signaling BP 0.0490159292955189 SRS2//AT4G18593//AFP4 GO:1902578 single-organism localization BP 0.0492109542914471 XBAT34//CLEL//TGA1//CLEL//AT5G44680//AT5G37990//AST68//ATATE1//FHL//AT4G39670//NFD1//CRK19//AKT2//ABCB9//SEC15B//ATGSR2//AT3G19850//ABCC8//AT3G23600//AT3G21670//VPS60.1//AT1G52190//ATGER1//AT1G76520//ATNHX6//AtUGT85A3//AST56//AT1G68570//ATNAT8//CYP79B3//ATGSTU17//VPS35A//BP80-3;3//HY3//ATSPX3//ATLTP1 GO:0006082 organic acid metabolic process BP 0.0495796145768436 XBAT34//AT5G53770//AT2353//AT5G43910//AST68//ATGA20OX3//ATATE1//AT3G45160//AT4G39670//ACS8//ATGSR2//AT3G19400//AT3G23600//ATMES17//ATCYSD1//ATBG1//AT1G76520//IGMT1//BPE//UGT1//CYP79B3//AT1G05150//BP80-3;3//HY3//ATGSTU1 GO:0009719 response to endogenous stimulus BP 0.0500006268889023 XBAT34//IAA14//atnudt21//ARF7//KNAT3//MAKR6//AT2353//ATATE1//MYB77//DIN11//AT4G39670//ACS8//SRS2//IAA29//AKT2//ADOF1//AT3G05640//VPS60.1//AFP4//ATBG1//COR413-TM1//IAA6//BPE//5PTASE13//ATGSTU17//HY3 GO:0000096 sulfur amino acid metabolic process BP 0.0501291478401499 AST68//AT3G19400//ATCYSD1//AT1G76520//CYP79B3//AT1G05150 GO:0009314 response to radiation BP 0.0508586962613498 XBAT34//ARF7//KNAT3//AT2353//AT5G47800//AT5G44680//FHL//BGLU30//DIN11//IAA29//AT3G19850//AT3G08660//IAA6//AT1G54050//5PTASE13//ATGSTU17//HY3//CKA3 GO:0010410 hemicellulose metabolic process BP 0.0520490176557043 ATLAC17//AT5G48740//AT4G08160//AT1G79620//XXT4//TBL30 GO:0010563 negative regulation of phosphorus metabo... BP 0.0531713602043883 AT4G18593//ATCYCD1;1 GO:0031400 negative regulation of protein modificat... BP 0.0531713602043883 AT4G18593//ATCYCD1;1 GO:0045936 negative regulation of phosphate metabol... BP 0.0531713602043883 AT4G18593//ATCYCD1;1 GO:0009725 response to hormone BP 0.0550294103629547 XBAT34//IAA14//ARF7//KNAT3//MAKR6//AT2353//ATATE1//MYB77//DIN11//AT4G39670//SRS2//IAA29//AKT2//AT3G05640//VPS60.1//AFP4//ATBG1//COR413-TM1//IAA6//BPE//5PTASE13//ATGSTU17//HY3 GO:0042592 homeostatic process BP 0.0551827606123732 ATSOS3//AST68//SRS2//ATGSR2//ATBG1//ATGER1//ATNHX6//5PTASE13//HY3 GO:0008652 cellular amino acid biosynthetic process BP 0.0556550203083268 AST68//ACS8//ATGSR2//AT3G19400//ATCYSD1//AT1G76520//CYP79B3//AT1G05150 GO:0006818 hydrogen transport BP 0.0567207546916152 AT5G44680//AT3G19850//HY3 GO:0015992 proton transport BP 0.0567207546916152 AT5G44680//AT3G19850//HY3 GO:0016053 organic acid biosynthetic process BP 0.0575213477539022 XBAT34//AT5G53770//AT2353//AT5G43910//AST68//ATGA20OX3//AT4G39670//ACS8//ATGSR2//AT3G19400//ATCYSD1//AT1G76520//CYP79B3//AT1G05150//BP80-3;3 GO:0046394 carboxylic acid biosynthetic process BP 0.0575213477539022 XBAT34//AT5G53770//AT2353//AT5G43910//AST68//ATGA20OX3//AT4G39670//ACS8//ATGSR2//AT3G19400//ATCYSD1//AT1G76520//CYP79B3//AT1G05150//BP80-3;3 GO:0009069 serine family amino acid metabolic proce... BP 0.0596009272172976 AST68//AT3G19400//ATCYSD1//AT1G76520//CYP79B3 GO:0009958 positive gravitropism BP 0.0597875067371518 CLEL//CLEL GO:0044699 single-organism process BP 0.0674516527684778 XBAT34//CLEL//IAA14//ARF7//AO//AT5G33370//KNAT3//RLK//TGA1//AtRABA4a//CLEL//AOX2//BGAL6//AT5G61290//ATLAC17//AT5G53770//ATMLO11//AT2353//AT5G48740//PME5//AT5G44680//AT5G43910//AT5G37990//ATSOS3//AtTK1b//AST68//AT5G07800//ATGA20OX3//ATMSRA2//ATATE1//SUVH1//FHL//AT3G61240//BGLU30//ATBZIP61//AT3G57830//MYB77//DIN11//AT3G45160//PRK3//AT4G39670//CYP96A12//ATCAD7//ACS8//SRS2//NFD1//PFN2//AT4G28780//ATEXPB3//BGLU10//AT4G26790//CRK19//AKT2//AT4G18593//ABCB9//AT4G12980//AT4G08160//AT4G02940//SEC15B//AT3G12540//DHAR2//ATGSR2//AT3G13672//AT3G19850//AT3G19400//ABCC8//AT3G23600//AT3G21670//ATMES17//VPS60.1//CYP77A6//AFP4//ATCYSD1//ATBG1//anac032//COR413-TM1//AT1G52190//ATGER1//AT1G76520//IAA6//AT1G44970//ATNHX6//AT1G79620//XXT4//IGMT1//AT1G11410//AtUGT85A3//AT1G33700//BPE//AST56//AT1G68570//UGT1//5PTASE13//ATNAT8//TBL30//AT2G28620//EVR//AT2G21830//CYP79B3//BGLU46//ATGSTU17//AT1G30820//AT1G05150//VPS35A//ATCYCD1;1//BP80-3;3//AT2G15000//HY3//ATSPX3//ATGSTU1//ATGSTU7//ATLTP1//ARAC9//AT2G38180//CKA3 GO:0044712 single-organism catabolic process BP 0.0695788450655876 AT5G61290//ATLAC17//AT5G07800//ATGA20OX3//ATATE1//DHAR2//ATGSR2//AT3G23600//anac032//AT1G33700//BPE//UGT1//5PTASE13//CYP79B3//ATGSTU17//ATGSTU1//ATGSTU7 GO:0009966 regulation of signal transduction BP 0.0697660661366661 SRS2//AT4G18593//AFP4//ATBG1 GO:0023051 regulation of signaling BP 0.0697660661366661 SRS2//AT4G18593//AFP4//ATBG1 GO:0097305 response to alcohol BP 0.0715023310249478 IAA14//ARF7//MAKR6//ATATE1//AT4G39670//AKT2//AT3G05640//VPS60.1//AFP4//ATBG1//COR413-TM1//5PTASE13 GO:0019752 carboxylic acid metabolic process BP 0.0722630417805258 XBAT34//AT5G53770//AT2353//AT5G43910//AST68//ATGA20OX3//ATATE1//AT4G39670//ACS8//ATGSR2//AT3G19400//AT3G23600//ATMES17//ATCYSD1//ATBG1//AT1G76520//BPE//UGT1//CYP79B3//AT1G05150//BP80-3;3//HY3//ATGSTU1 GO:0042221 response to chemical BP 0.0723012068859853 AT2G45290//XBAT34//IAA14//AT5G04380//atnudt21//ARF7//KNAT3//TGA1//MAKR6//AT2353//ATSOS3//ATMSRA2//ATATE1//BGLU30//ATBZIP61//MYB77//DIN11//AT4G39670//ACS8//SRS2//IAA29//ATEXPB3//CRK19//AKT2//ADOF1//DHAR2//AT1G75280//ATGSR2//AT3G23600//AT3G05640//VPS60.1//AFP4//ATBG1//anac032//COR413-TM1//IAA6//BPE//AT1G54050//UGT1//5PTASE13//ATGSTU17//BP80-3;3//HY3//ATGSTU1//ATGSTU7 GO:0009686 gibberellin biosynthetic process BP 0.0737986186342398 AT2353//ATGA20OX3 GO:0016102 diterpenoid biosynthetic process BP 0.0737986186342398 AT2353//ATGA20OX3 GO:0046482 para-aminobenzoic acid metabolic process BP 0.0737986186342398 UGT1//ATGSTU1 GO:0006811 ion transport BP 0.0764217699612202 TGA1//AT5G44680//AT5G37990//AST68//ATATE1//CRK19//AKT2//ATGSR2//AT3G19850//ATGER1//AT1G76520//ATNHX6//AtUGT85A3//AST56//ATGSTU17//HY3//ATSPX3 GO:0009630 gravitropism BP 0.0800157160701299 CLEL//ARF7//CLEL//HY3 GO:0010374 stomatal complex development BP 0.0800157160701299 AT4G28780//ATGER1//ATCYCD1;1//HY3