GOID TERM ONTOLOGY pValue Genes GO:0006536 glutamate metabolic process BP 0.000505237603583533 ATGSL1//GAD//AT1G77670 GO:0009741 response to brassinosteroid BP 0.00236037723012951 ATIWS1//ALNS//AT3G17950//SAUR28//AUF1 GO:0043648 dicarboxylic acid metabolic process BP 0.00430956609805294 ATGSL1//GAD//DHS2//AT1G77670 GO:0010016 shoot system morphogenesis BP 0.00569814470535716 EYE//ATPOB1//ATNOA1//ATHB-8//DRT112//AtHB33//NET1A//NDF5//AT2G27290//AtIDD5 GO:0009064 glutamine family amino acid metabolic pr... BP 0.0063574947779389 ATGSL1//GAD//AT1G77670 GO:0009965 leaf morphogenesis BP 0.00980580694142922 ATNOA1//DRT112//NET1A//NDF5//AT2G27290//AtIDD5 GO:0000478 endonucleolytic cleavage involved in rRN... BP 0.0114507923261695 AT3G53890//AT2G37990 GO:0046688 response to copper ion BP 0.0114507923261695 DRT112//LAC5 GO:0090502 RNA phosphodiester bond hydrolysis, endo... BP 0.0114507923261695 AT3G53890//AT2G37990 GO:0016053 organic acid biosynthetic process BP 0.0131295800118509 ATIWS1//AT5G45480//ATGSL1//GASA4//DHS2//AT4G28030//AT4G10070//PETC//DRT112//ATHMT-1//ATERDJ3A//AT1G77670//EMB2784//KCS1//ATGA3OX1//AtkdsA1//CHL-CPN10 GO:0046394 carboxylic acid biosynthetic process BP 0.0131295800118509 ATIWS1//AT5G45480//ATGSL1//GASA4//DHS2//AT4G28030//AT4G10070//PETC//DRT112//ATHMT-1//ATERDJ3A//AT1G77670//EMB2784//KCS1//ATGA3OX1//AtkdsA1//CHL-CPN10 GO:0000469 cleavage involved in rRNA processing BP 0.0138429254539869 AT3G53890//AT2G37990 GO:0007264 small GTPase mediated signal transductio... BP 0.0158780488268396 ATRAB2B//AtRABH1a//ATRAB8//ATHSGBP GO:0090501 RNA phosphodiester bond hydrolysis BP 0.0164307650814728 AT3G53890//AT2G37990 GO:0010114 response to red light BP 0.0168166695014718 ATGSL1//ATPOB1//DRT112//ATGA3OX1 GO:1901605 alpha-amino acid metabolic process BP 0.0184133664007765 AT5G45480//ATGSL1//GAD//GASA4//AT4G28030//DRT112//ATHMT-1//AT1G77670//EMB2784//MCCA//CHL-CPN10 GO:0006520 cellular amino acid metabolic process BP 0.0191794407429258 AT5G45480//ATGSL1//GAD//GASA4//DHS2//AT4G28030//DRT112//ATHMT-1//AT1G77670//EMB2784//GATB//MCCA//CHL-CPN10 GO:0019439 aromatic compound catabolic process BP 0.0200874238330293 AT5G45480//NOL//AT4G28030//AT4G10070//AT3G24740//LAC5//CHL-CPN10 GO:0006457 protein folding BP 0.0213099405936867 AT1G44478//AT5G25530//AT5G59610//AT3G47940//ATERDJ3A//AT1G77930//CHL-CPN10 GO:1901606 alpha-amino acid catabolic process BP 0.0231191812856227 AT5G45480//AT4G28030//AT1G77670//MCCA//CHL-CPN10 GO:1901361 organic cyclic compound catabolic proces... BP 0.0232394703379932 AT5G45480//NOL//AT4G28030//AT4G10070//AT3G24740//LAC5//CHL-CPN10 GO:0009063 cellular amino acid catabolic process BP 0.0249923734079567 AT5G45480//AT4G28030//AT1G77670//MCCA//CHL-CPN10 GO:0006412 translation BP 0.0258098712750479 AT5G24490//AT5G01940//AT3G55170//AT3G53890//DRT112//AT1G07070//AT1G73850//EMB2784//GATB//AtIDD5//RPS14 GO:0009688 abscisic acid biosynthetic process BP 0.0285992740548244 AT4G10070//ATERDJ3A GO:0043289 apocarotenoid biosynthetic process BP 0.0285992740548244 AT4G10070//ATERDJ3A GO:1902645 tertiary alcohol biosynthetic process BP 0.0285992740548244 AT4G10070//ATERDJ3A GO:0032269 negative regulation of cellular protein ... BP 0.030772113755892 SIM//DRT112//ATPEN2 GO:0051248 negative regulation of protein metabolic... BP 0.030772113755892 SIM//DRT112//ATPEN2 GO:0044283 small molecule biosynthetic process BP 0.0326232931975288 ATIWS1//AT5G45480//ATGSL1//GASA4//SIM//DHS2//AT4G28030//AT4G10070//PETC//DRT112//ATHMT-1//ATERDJ3A//AT1G77670//EMB2784//KCS1//ATGA3OX1//AtkdsA1//KPHMT1//CHL-CPN10 GO:0006569 tryptophan catabolic process BP 0.0327435278856651 AT5G45480//AT4G28030//CHL-CPN10 GO:0042436 indole-containing compound catabolic pro... BP 0.0327435278856651 AT5G45480//AT4G28030//CHL-CPN10 GO:0046218 indolalkylamine catabolic process BP 0.0327435278856651 AT5G45480//AT4G28030//CHL-CPN10 GO:0009687 abscisic acid metabolic process BP 0.0356807967868423 AT4G10070//ATERDJ3A GO:0043288 apocarotenoid metabolic process BP 0.0356807967868423 AT4G10070//ATERDJ3A GO:1902644 tertiary alcohol metabolic process BP 0.0356807967868423 AT4G10070//ATERDJ3A GO:0019752 carboxylic acid metabolic process BP 0.0385937364647796 ATIWS1//AT5G14910//AT5G45480//ATGSL1//GAD//GASA4//ATNOA1//DHS2//AT4G28030//AT4G10070//PETC//DRT112//AT2G34160//ATHMT-1//ATERDJ3A//AT1G77670//EMB2784//GATB//KCS1//ATGA3OX1//AtkdsA1//ICDH//MCCA//AT1G55805//CHL-CPN10 GO:0043603 cellular amide metabolic process BP 0.0390430717432783 ALNS//AT1G77670//KPHMT1 GO:0016106 sesquiterpenoid biosynthetic process BP 0.0394488006507514 AT4G10070//ATERDJ3A GO:0044270 cellular nitrogen compound catabolic pro... BP 0.0420943250153249 AT5G45480//NOL//AT4G28030//AT4G10070//AT3G24740//CHL-CPN10 GO:0046700 heterocycle catabolic process BP 0.0420943250153249 AT5G45480//NOL//AT4G28030//AT4G10070//AT3G24740//CHL-CPN10 GO:0009742 brassinosteroid mediated signaling pathw... BP 0.0433603221576078 ATIWS1//ALNS GO:0043401 steroid hormone mediated signaling pathw... BP 0.0433603221576078 ATIWS1//ALNS GO:0048545 response to steroid hormone BP 0.0433603221576078 ATIWS1//ALNS GO:0071367 cellular response to brassinosteroid sti... BP 0.0433603221576078 ATIWS1//ALNS GO:0071383 cellular response to steroid hormone sti... BP 0.0433603221576078 ATIWS1//ALNS GO:0043604 amide biosynthetic process BP 0.0474095726951588 ALNS//KPHMT1 GO:0030154 cell differentiation BP 0.0475690662836304 AT5G26720//RHS19//DCR//GAD//SIM//AT5G02720//ATNOA1//ATHB-8//DRT112//ATERDJ3A//NDF5//AtkdsA1//AT2G27290//AtIDD5 GO:0009074 aromatic amino acid family catabolic pro... BP 0.0483260366731368 AT5G45480//AT4G28030//CHL-CPN10 GO:0044267 cellular protein metabolic process BP 0.0489855348855058 AT1G44478//ATIWS1//AT5G25530//AT5G66710//AT5G59610//BSK5//ALNS//AT5G47430//RPT4A//AT5G39390//AT5G24490//ATXR5//SRF2//NOL//SIM//AT5G03640//AT5G01940//AT3G55170//AT3G53890//AT3G47940//AT4G02580//DRT112//AT1G07070//ATPEN2//ATERDJ3A//AT3G01490//AT1G73850//EMB2784//GATB//AT1G32730//AT1G77930//AT1G27520//OTS2//AT1G22720//AT1G77280//AT2G37990//AtIDD5//PAHX//CHL-CPN10//RPS14//AT2G41930//ATOEP16-3 GO:0019538 protein metabolic process BP 0.0513890144968289 AT1G44478//ATIWS1//AT5G25530//AT5G66710//AT5G59610//BSK5//ALNS//AT5G47430//RPT4A//AT5G39390//AT5G24490//ATXR5//SRF2//NOL//SIM//AT5G04600//AT5G03640//AT5G01940//AT3G55170//AT3G53890//AT3G47940//ATNOA1//AT4G02580//DRT112//AT1G07070//ATPEN2//ATERDJ3A//AT3G01490//AT1G73850//EMB2784//GATB//AT1G32730//AT1G77930//AT1G27520//OTS2//AT1G22720//AT1G77280//AT2G37990//AtIDD5//PAHX//CHL-CPN10//RPS14//ARASP//AT2G41930//ATOEP16-3" GO:0006714 sesquiterpenoid metabolic process BP 0.051590915004409 AT4G10070//ATERDJ3A GO:0044764 multi-organism cellular process BP 0.051590915004409 ATXR5//TOM2A GO:1901565 organonitrogen compound catabolic proces... BP 0.0543378037986243 AT5G45480//NOL//AT4G28030//AT1G77670//MCCA//CHL-CPN10 GO:0043436 oxoacid metabolic process BP 0.0576905551068779 ATIWS1//AT5G14910//AT5G45480//ATGSL1//GAD//GASA4//ATNOA1//DHS2//AT4G28030//AT4G10070//PETC//DRT112//AT2G34160//ATHMT-1//ATERDJ3A//AT1G77670//EMB2784//GATB//KCS1//ATGA3OX1//AtkdsA1//ICDH//MCCA//AT1G55805//CHL-CPN10 GO:0006082 organic acid metabolic process BP 0.0582036859537852 ATIWS1//AT5G14910//AT5G45480//ATGSL1//GAD//GASA4//ATNOA1//DHS2//AT4G28030//AT4G10070//PETC//DRT112//AT2G34160//ATHMT-1//ATERDJ3A//AT1G77670//EMB2784//GATB//KCS1//ATGA3OX1//AtkdsA1//ICDH//MCCA//AT1G55805//CHL-CPN10 GO:0001933 negative regulation of protein phosphory... BP 0.0603280623878872 SIM//ATPEN2 GO:0006469 negative regulation of protein kinase ac... BP 0.0603280623878872 SIM//ATPEN2 GO:0033673 negative regulation of kinase activity BP 0.0603280623878872 SIM//ATPEN2 GO:0042326 negative regulation of phosphorylation BP 0.0603280623878872 SIM//ATPEN2 GO:0051348 negative regulation of transferase activ... BP 0.0603280623878872 SIM//ATPEN2 GO:0071901 negative regulation of protein serine/th... BP 0.0603280623878872 SIM//ATPEN2 GO:0016049 cell growth BP 0.061295144486242 AT5G26720//ALNS//EYE//GAD//AT5G02720//ATHB-8//DRT112//ATERDJ3A//AtkdsA1 GO:0006568 tryptophan metabolic process BP 0.0613012475370662 AT5G45480//AT4G28030//CHL-CPN10 GO:0006586 indolalkylamine metabolic process BP 0.0613012475370662 AT5G45480//AT4G28030//CHL-CPN10 GO:0009887 organ morphogenesis BP 0.06654634473615 ATNOA1//ATHB-8//DRT112//NET1A//NDF5//AT1G32730//AT2G27290//AtIDD5 GO:1990267 response to transition metal nanoparticl... BP 0.0669012471765168 DRT112//LAC5//AT2G32520 GO:0044260 cellular macromolecule metabolic process BP 0.0689255548052783 AT1G44478//ATIWS1//DEL2//AT5G25470//AT5G25530//AT5G66710//At-SC35//AT5G62610//AT5G59610//BSK5//ALNS//AT5G50110//AT5G47430//RPT4A//AT5G39390//AT5G24490//KAPP//ATXR5//SRF2//NOL//SIM//AT5G04600//AT5G03640//AT5G01940//AT3G55170//AT3G53890//AT3G47940//ATNOA1//DOF6//AtbZIP7//ATHB-8//NINJA//AT4G10070//PETC//AT4G02580//DRT112//AT1G07070//DREB2//AtHB33//AT3G24740//ATPEN2//NET1A//anac047//ATERDJ3A//DRT102//AT3G01490//NDF5//AT1G73850//EMB2784//GATB//AT1G32730//AT1G15920//AT1G77930//AT1G27520//AtkdsA1//ICDH//OTS2//AT2G16365//AT1G22720//AT1G77280//AT2G27290//AT2G37990//AtIDD5//PAHX//AT2G19790//CHL-CPN10//RPS14//AT2G41930//ATOEP16-3 GO:0010563 negative regulation of phosphorus metabo... BP 0.0695295661543257 SIM//ATPEN2 GO:0031400 negative regulation of protein modificat... BP 0.0695295661543257 SIM//ATPEN2 GO:0045936 negative regulation of phosphate metabol... BP 0.0695295661543257 SIM//ATPEN2 GO:0048588 developmental cell growth BP 0.0763784117270451 AT5G26720//GAD//AT5G02720//DRT112//ATERDJ3A//AtkdsA1 GO:0009684 indoleacetic acid biosynthetic process BP 0.0787708322967861 AT5G45480//AT4G28030//CHL-CPN10 GO:0009683 indoleacetic acid metabolic process BP 0.0818729573135755 AT5G45480//AT4G28030//CHL-CPN10 GO:0016192 vesicle-mediated transport BP 0.083158096946533 ATIWS1//AtRABH1a//ATNOA1//AT4G23460//ATHSGBP//ATRABA1B//ATPEN2//AT2G34840 GO:0080167 response to karrikin BP 0.0850272674885187 COR27//PETC//AT2G16365 GO:0008104 protein localization BP 0.0865301892841246 ATRAB2B//ATIWS1//AT5G14910//AtRABH1a//EYE//AT5G04600//ATRAB8//AT4G23460//ATHSGBP//PETC//ATRABA1B//AT2G37990//AT2G19790//ATOEP16-3 GO:0009653 anatomical structure morphogenesis BP 0.0873621676039525 AT5G26720//RHS19//EYE//DCR//KAPP//GAD//AT5G02720//ATPOB1//ATNOA1//ATHB-8//DRT112//AtHB33//NET1A//ATERDJ3A//NDF5//AT1G32730//AtkdsA1//AT2G27290//AtIDD5 GO:0009310 amine catabolic process BP 0.0882328824452742 AT5G45480//AT4G28030//CHL-CPN10 GO:0022900 electron transport chain BP 0.0882328824452742 PETC//AT4G02580//NDF5 GO:0042402 cellular biogenic amine catabolic proces... BP 0.0882328824452742 AT5G45480//AT4G28030//CHL-CPN10 GO:0042254 ribosome biogenesis BP 0.0910115095954115 AT5G50110//AT3G55170//AT3G53890//ATNOA1//PETC//AT1G07070//AT2G37990 GO:0045893 positive regulation of transcription, DN... BP 0.0926060872817944 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:0051254 positive regulation of RNA metabolic pro... BP 0.0926060872817944 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:1902680 positive regulation of RNA biosynthetic ... BP 0.0926060872817944 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:1903508 positive regulation of nucleic acid-temp... BP 0.0926060872817944 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:0072330 monocarboxylic acid biosynthetic process BP 0.0961371291706256 ATIWS1//AT5G45480//AT4G28030//AT4G10070//PETC//ATERDJ3A//AT1G77670//KCS1//CHL-CPN10 GO:0009932 cell tip growth BP 0.0978909807474294 AT5G26720//AT5G02720//DRT112//ATERDJ3A//AtkdsA1 GO:0009851 auxin biosynthetic process BP 0.0981485550749922 AT5G45480//AT4G28030//CHL-CPN10 GO:0022613 ribonucleoprotein complex biogenesis BP 0.0991409329435701 AT5G50110//AT3G55170//AT3G53890//ATNOA1//PETC//AT1G07070//AT2G37990 GO:0000904 cell morphogenesis involved in different... BP 0.10091535656167 AT5G26720//DCR//AT5G02720//ATHB-8//ATERDJ3A//AtkdsA1 GO:0043170 macromolecule metabolic process BP 0.101040962741616 AT1G44478//ATIWS1//DEL2//AT5G25470//AT5G25530//AT5G66710//At-SC35//AT5G62610//AT5G59610//BSK5//ALNS//AT5G50110//AT5G47430//RPT4A//AT5G39390//AT5G24490//DCR//KAPP//ATXR5//SRF2//NOL//SIM//AT5G04600//AT5G03640//AT5G01940//AT3G55170//AT3G53890//AT3G47940//ATNOA1//DOF6//AtbZIP7//ATHB-8//NINJA//AT4G10070//PETC//AT4G02580//DRT112//AT1G07070//DREB2//AtHB33//AT3G24740//ATPEN2//NET1A//anac047//ATERDJ3A//DRT102//AT3G01490//NDF5//AT1G73850//EMB2784//GATB//AT1G32730//AT1G15920//AT1G77930//AT1G27520//AtkdsA1//ICDH//OTS2//AT2G16365//AT1G22720//AT1G77280//AT2G27290//AT2G37990//AtIDD5//PAHX//AT2G19790//CHL-CPN10//RPS14//ARASP//AT2G41930//ATOEP16-3 GO:0044036 cell wall macromolecule metabolic proces... BP 0.102224524325402 ATHB-8//NET1A//AtkdsA1//ICDH//OTS2 GO:0045935 positive regulation of nucleobase-contai... BP 0.104205306385719 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:0019344 cysteine biosynthetic process BP 0.104259459685393 ATGSL1//GASA4//DRT112//EMB2784 GO:0006534 cysteine metabolic process BP 0.106938061542064 ATGSL1//GASA4//DRT112//EMB2784 GO:0051173 positive regulation of nitrogen compound... BP 0.107658599653342 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:0010628 positive regulation of gene expression BP 0.109408204676538 ATNOA1//DRT112//AtHB33//NDF5//AT2G16365//AT2G27290//AtIDD5 GO:0009750 response to fructose BP 0.115615153324798 ATGSL1//AT4G28030//MCCA GO:0042127 regulation of cell proliferation BP 0.115615153324798 DEL2//ATHB-8//NET1A GO:0006417 regulation of translation BP 0.115659078584086 DRT112//AtIDD5