GOID TERM ONTOLOGY pValue Genes GO:0006354 DNA-templated transcription, elongation BP 2.09448494932053e-05 YCF5//PETG//PSBB//PSBT//RPL14//NDHJ//ATPF//RPS19//AT5G46160//NRPA1//EMB2289//GTB1//SCY1 GO:0042127 regulation of cell proliferation BP 0.00581442016063489 ATTCP24//SMP2//RIP5//AT3G45830//DDL//ELF8//AT2G27285 GO:0016998 cell wall macromolecule catabolic proces... BP 0.00751851493911446 AtXTH31//ATCTL2//LYM1 GO:0016572 histone phosphorylation BP 0.00942501321151889 AT5G17160//AT5G37010//AT3G17680//AtHaspin//ELF8 GO:0008284 positive regulation of cell proliferatio... BP 0.0121734501743152 SMP2//AT3G45830//DDL//ELF8//AT2G27285 GO:0009225 nucleotide-sugar metabolic process BP 0.0126306872921378 ATUSP//UXS5//AT4G20460//AT1G70820 GO:0043562 cellular response to nitrogen levels BP 0.0278427844021381 PYD2//ALN//ATHB-15 GO:0071496 cellular response to external stimulus BP 0.0285453211208271 NDHJ//PYD2//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//AT1G70820//ATGLR3.4//ATHB-15 GO:0008283 cell proliferation BP 0.0314867529070438 ATTCP24//SMP2//RIP5//OLI2//AT5G37010//AT3G45830//DDL//AtHaspin//ELF8//AT2G27285 GO:0031327 negative regulation of cellular biosynth... BP 0.0327818047745865 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G49100//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//AT1G80360//ELF8 GO:0006012 galactose metabolic process BP 0.0343501778957276 AtGolS2//AT4G20460//GAL1 GO:0043247 telomere maintenance in response to DNA ... BP 0.0343501778957276 AT5G08450//ATUBA2//AT3G45830 GO:0009890 negative regulation of biosynthetic proc... BP 0.0345288519948868 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G49100//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//AT1G80360//ELF8 GO:0009641 shade avoidance BP 0.0357911742613659 AT1G80360//BBX22 GO:0032204 regulation of telomere maintenance BP 0.0378729044655106 AT5G08450//ATUBA2//AT3G45830 GO:0032844 regulation of homeostatic process BP 0.0415726194098125 AT5G08450//ATUBA2//AT3G45830 GO:0042762 regulation of sulfur metabolic process BP 0.042176110517262 OLD5//AT1G80360 GO:0070972 protein localization to endoplasmic reti... BP 0.042176110517262 AT3G49100//AT1G75760 GO:0051052 regulation of DNA metabolic process BP 0.0442170498947704 AT4G14200//AT5G08450//AT5G37010//ATUBA2//DMS3//AT3G45830//AtHaspin GO:0010252 auxin homeostasis BP 0.0489492109614921 DFL1//ATSNX1 GO:0000723 telomere maintenance BP 0.0494939660456387 AT5G08450//ATUBA2//AT3G45830 GO:0032200 telomere organization BP 0.0494939660456387 AT5G08450//ATUBA2//AT3G45830 GO:0060249 anatomical structure homeostasis BP 0.0494939660456387 AT5G08450//ATUBA2//AT3G45830 GO:0010410 hemicellulose metabolic process BP 0.0549183944587783 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1//AtMUR3 GO:0031669 cellular response to nutrient levels BP 0.0557313021123668 NDHJ//PYD2//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//ATHB-15 GO:0009789 positive regulation of abscisic acid-act... BP 0.0560841607458873 SNRK2-3//ATPLDDELTA GO:0046488 phosphatidylinositol metabolic process BP 0.0571650761620234 BST1//AT5G40500//AT5G17670//AT5G06480//AT1G68070//ATCXXS1 GO:0010558 negative regulation of macromolecule bio... BP 0.0574619757352789 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G49100//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:2000113 negative regulation of cellular macromol... BP 0.0574619757352789 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G49100//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:0006598 polyamine catabolic process BP 0.0580932937940238 FPS1//ATMYB4//ATVLN2 GO:0051172 negative regulation of nitrogen compound... BP 0.0588158970430706 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//AT1G80360//ELF8 GO:0031668 cellular response to extracellular stimu... BP 0.061761563037475 NDHJ//PYD2//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//AT1G70820//ATHB-15 GO:0006566 threonine metabolic process BP 0.0635557985623138 AT1G72810//ASA2 GO:1901421 positive regulation of response to alcoh... BP 0.0635557985623138 SNRK2-3//ATPLDDELTA GO:0042752 regulation of circadian rhythm BP 0.0673457027151413 AtTCP11//AtTIR1//ARR4 GO:0048646 anatomical structure formation involved ... BP 0.0710887735472385 AT4G14200//AtTIR1//ATEXPB3//ATEXP8//LRS1//LYM1//AtRLP10//AtHaspin GO:0006357 regulation of transcription from RNA pol... BP 0.0713400732157989 CCT//GTB1 GO:0006949 syncytium formation BP 0.0713400732157989 ATEXPB3//ATEXP8 GO:0010089 xylem development BP 0.0722081228532446 ACL5//ATRABG3B//ATHB-15 GO:0031667 response to nutrient levels BP 0.0752946428541989 NDHJ//PYD2//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//ATHB-15 GO:0006071 glycerol metabolic process BP 0.0794140017075141 AtGDPD6//AT2G27360 GO:0009226 nucleotide-sugar biosynthetic process BP 0.0794140017075141 ATUSP//AT1G70820 GO:0009306 protein secretion BP 0.0794140017075141 EMB2289//SCY1 GO:0009828 plant-type cell wall loosening BP 0.0794140017075141 ATEXPB3//ATEXP8 GO:0010020 chloroplast fission BP 0.0794140017075141 ARC6//FTSZ2-2 GO:0072525 pyridine-containing compound biosyntheti... BP 0.0794140017075141 OLD5//ATSOS4 GO:0009991 response to extracellular stimulus BP 0.0827189092017397 NDHJ//PYD2//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//AT1G70820//ATHB-15 GO:0045892 negative regulation of transcription, DN... BP 0.0833067362325939 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0833067362325939 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0833067362325939 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:0006857 oligopeptide transport BP 0.0847761617561234 GTR1//ATMYB4//ATNUDX25//AT1G22570 GO:0015833 peptide transport BP 0.0847761617561234 GTR1//ATMYB4//ATNUDX25//AT1G22570 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0851340190568417 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:0006342 chromatin silencing BP 0.0864534904411481 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//PHYE//DDL//ELF8 GO:0045814 negative regulation of gene expression, ... BP 0.0864534904411481 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//PHYE//DDL//ELF8 GO:0042592 homeostatic process BP 0.0868348386373495 YCF5//AtG3Pp4//AT5G08450//ACA8//ATCNGC4//DFL1//FPS1//ATF2//ATSNX1//ATUBA2//ATCBG//AT3G45830//ATCXXS1//ATGLR3.4 GO:0019400 alditol metabolic process BP 0.0877556287776729 AtGDPD6//AT2G27360 GO:0043572 plastid fission BP 0.0877556287776729 ARC6//FTSZ2-2 GO:0006325 chromatin organization BP 0.0882325025856652 AT4G14200//AT5G17160//AT5G37010//ATUBA2//DMS3//PHYE//DDL//AT3G17680//LYM1//HTB1//AT1G54260//AT2G25270//GTB1//AtRLP10//AtHaspin//ELF8 GO:0010332 response to gamma radiation BP 0.0931428814673601 AT5G08450//ATUBA2//AT3G45830 GO:0016311 dephosphorylation BP 0.0935076654717113 TOPP4//ATTCP24//AtTCP11//BST1//AT1G43900//APG2//BBX22//ATPAP8//AT2G25870 GO:0044036 cell wall macromolecule metabolic proces... BP 0.0935893919776056 AT5G08450//IRX14//AT3G45830//AtXTH31//ATCTL2//ATGATL1//LYM1//AtMUR3 GO:0046434 organophosphate catabolic process BP 0.0963439878599887 BST1//ATNUDX25 GO:0048645 organ formation BP 0.0973876111006314 AT4G14200//AtTIR1//LRS1//LYM1//AtRLP10//AtHaspin GO:0009267 cellular response to starvation BP 0.0975808343393724 NDHJ//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//ATHB-15 GO:0010413 glucuronoxylan metabolic process BP 0.0976099164119633 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1 GO:0000086 G2/M transition of mitotic cell cycle BP 0.0987273408008481 AT4G14200//AT5G37010//AtHaspin GO:0010389 regulation of G2/M transition of mitotic... BP 0.0987273408008481 AT4G14200//AT5G37010//AtHaspin GO:0044839 cell cycle G2/M phase transition BP 0.0987273408008481 AT4G14200//AT5G37010//AtHaspin GO:1902749 regulation of cell cycle G2/M phase tran... BP 0.0987273408008481 AT4G14200//AT5G37010//AtHaspin GO:0016568 chromatin modification BP 0.100177715571548 AT4G14200//AT5G17160//AT5G37010//ATUBA2//DMS3//PHYE//DDL//AT3G17680//LYM1//AT2G25270//AtRLP10//AtHaspin//ELF8 GO:0006576 cellular biogenic amine metabolic proces... BP 0.100349438152192 FPS1//ATMYB4//AT1G80360//ATVLN2//ATGATL1//AGP16//ASA2 GO:0045492 xylan biosynthetic process BP 0.101210183540813 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1 GO:0010051 xylem and phloem pattern formation BP 0.101610583109501 AT4G14200//IRX14//ATGATL1//ATHB-15 GO:0045934 negative regulation of nucleobase-contai... BP 0.102688516137493 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//ELF8 GO:0006995 cellular response to nitrogen starvation BP 0.105159063400889 ALN//ATHB-15 GO:0042886 amide transport BP 0.106043227840156 GTR1//ATMYB4//ATNUDX25//AT1G22570 GO:0006304 DNA modification BP 0.106871792792928 AT5G37010//DMS3//AT4G12740//DDL//AtHaspin//ELF8 GO:0006305 DNA alkylation BP 0.106871792792928 AT5G37010//DMS3//AT4G12740//DDL//AtHaspin//ELF8 GO:0006306 DNA methylation BP 0.106871792792928 AT5G37010//DMS3//AT4G12740//DDL//AtHaspin//ELF8 GO:0044728 DNA methylation or demethylation BP 0.106871792792928 AT5G37010//DMS3//AT4G12740//DDL//AtHaspin//ELF8 GO:0033554 cellular response to stress BP 0.107006860843422 NDHJ//ATTCP24//AtTCP11//AT5G08450//DDB2//ATSERAT1;1//OLI2//ATCNGC4//SUV2//RPS4//FSD3//AT5G09830//ATUBA2//AtTIR1//AT3G57280//DMS3//AT3G45830//AT4G23000//AT4G12740//ALN//AT1G18090//ATPPCK2//LAC7//ATGATL1//AT1G70820//BBX22//ARR4//ATGLR3.4//ATHB-15//ATBAG6 GO:0031324 negative regulation of cellular metaboli... BP 0.107620628379713 AT4G14200//AT5G37010//ATUBA2//DMS3//AT3G49100//AT3G45830//ATMYB4//AT4G23000//PHYE//DDL//ATPPCK2//AT1G80360//ELF8 GO:0045491 xylan metabolic process BP 0.108606913470805 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1 GO:0051276 chromosome organization BP 0.11154181217662 AT4G14200//AT5G08450//SMP2//AT5G17160//AT5G37010//ATUBA2//DMS3//AT3G45830//PHYE//DDL//AT3G17680//LYM1//HTB1//AT1G54260//AT2G25270//GTB1//AtRLP10//AtHaspin//ELF8 GO:0042594 response to starvation BP 0.111848560467343 NDHJ//AtTIR1//AT4G23000//ALN//ATPPCK2//LAC7//ATHB-15 GO:1901987 regulation of cell cycle phase transitio... BP 0.116253596135089 AT4G14200//AT5G37010//AtHaspin GO:1901990 regulation of mitotic cell cycle phase t... BP 0.116253596135089 AT4G14200//AT5G37010//AtHaspin GO:0009965 leaf morphogenesis BP 0.1169520929274 CSK//AT4G14200//ATTCP24//AtTCP11//AT5G62840//OLI2//AtRLP10//ATHB-15 GO:0051567 histone H3-K9 methylation BP 0.120230551721865 AT4G14200//AT5G37010//ATUBA2//DMS3//AtHaspin//ELF8 GO:0061647 histone H3-K9 modification BP 0.120230551721865 AT4G14200//AT5G37010//ATUBA2//DMS3//AtHaspin//ELF8 GO:0009308 amine metabolic process BP 0.122534296153129 FPS1//ATCKX6//ATMYB4//AT1G80360//ATVLN2//ATGATL1//AGP16//ASA2 GO:0006974 cellular response to DNA damage stimulus BP 0.12259078912281 AT5G08450//DDB2//SUV2//AT5G09830//ATUBA2//DMS3//AT3G45830//AT4G12740//AT1G18090 GO:0009967 positive regulation of signal transducti... BP 0.123393839815307 SNRK2-3//ATPLDDELTA GO:0023056 positive regulation of signaling BP 0.123393839815307 SNRK2-3//ATPLDDELTA GO:0016569 covalent chromatin modification BP 0.124261202995597 AT4G14200//AT5G17160//AT5G37010//ATUBA2//DMS3//PHYE//DDL//AT3G17680//LYM1//AtRLP10//AtHaspin//ELF8 GO:0031048 chromatin silencing by small RNA BP 0.124620698901674 AT4G14200//AT5G37010//AT3G45830//ELF8 GO:0044038 cell wall macromolecule biosynthetic pro... BP 0.128205049438515 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1 GO:0070589 cellular component macromolecule biosynt... BP 0.128205049438515 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1 GO:0070592 cell wall polysaccharide biosynthetic pr... BP 0.128205049438515 AT5G08450//IRX14//AT3G45830//ATCTL2//ATGATL1