GOID TERM ONTOLOGY pValue Genes GO:0043248 proteasome assembly BP 0.00401030964119646 AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0051788 response to misfolded protein BP 0.00401030964119646 AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0000303 response to superoxide BP 0.00623249537198585 ATCPN21//LOL1//ACO3 GO:0000305 response to oxygen radical BP 0.00623249537198585 ATCPN21//LOL1//ACO3 GO:0006399 tRNA metabolic process BP 0.00651745953609947 FLN1//EDD//AT4G24750//AtTRM9//AT3G18680//AT1G72550//ATIPT2 GO:0080129 proteasome core complex assembly BP 0.00852087638973328 AT5G11770//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0045036 protein targeting to chloroplast BP 0.0115186385525789 SVR7//GSA2//AT4G24750//AT3G18680//ATTIC110 GO:0072596 establishment of protein localization to... BP 0.0115186385525789 SVR7//GSA2//AT4G24750//AT3G18680//ATTIC110 GO:0072598 protein localization to chloroplast BP 0.0115186385525789 SVR7//GSA2//AT4G24750//AT3G18680//ATTIC110 GO:0016482 cytoplasmic transport BP 0.0120335996205284 SVR7//ATOPT1//AtRAN4//AT5G41970//AT5G38890//ATTIP49A//LOS4//GSA2//AtLa1//AT4G24750//AT3G18680//CRM1B//ATTIC110//ATPEX7//AT1G80245//AT1G62020//ATCYP5//AT2G34357 GO:0046685 response to arsenic-containing substance BP 0.012985382986044 ATHS83//ATNLM2//HY3 GO:0072503 cellular divalent inorganic cation homeo... BP 0.012985382986044 VHA-A2//HY3//ATCAX1 GO:0035670 plant-type ovary development BP 0.0141654248428296 ATCPN21//FLN1//EDD//CP33//AT3G18680//AT1G36390 GO:0048481 ovule development BP 0.0141654248428296 ATCPN21//FLN1//EDD//CP33//AT3G18680//AT1G36390 GO:0006508 proteolysis BP 0.0154721291663308 AT1G67690//AT5G57950//ATTIP49A//AT5G19100//AT5G11770//CYC2BAT//CI51//scpl40//AT3G61540//ATCTIMC//AT3G45310//AT4G33490//GAMMA-VPE//AT4G17830//CRM1B//MPPalpha//SCPL45//EMB2719//ATECH2//ACO3 GO:0009657 plastid organization BP 0.0189288855055298 SVR7//ATCPN21//FLN1//EDD//PHS1//AT4G26370//AT4G24750//CP33//AT3G18680//AT1G36390//ATTIC110//HMR GO:0072507 divalent inorganic cation homeostasis BP 0.0205156765545979 VHA-A2//HY3//ATCAX1 GO:0006801 superoxide metabolic process BP 0.0205374482487728 ATCPN21//LOL1 GO:0010942 positive regulation of cell death BP 0.0205374482487728 LOL1//ATMYB65 GO:0016226 iron-sulfur cluster assembly BP 0.0224961767170423 FLN1//AT4G26370//CP33//AT3G18680//AT1G36390 GO:0031163 metallo-sulfur cluster assembly BP 0.0224961767170423 FLN1//AT4G26370//CP33//AT3G18680//AT1G36390 GO:0006457 protein folding BP 0.0229786392332049 ATHS83//ATFKBP65//LOS4//FKBP16-2//AT4G07990//AT1G36390//AT2G43630//AT2G21510//ATCYP5//CHL-CPN10 GO:0006857 oligopeptide transport BP 0.0237424129581057 ATOPT1//ATPTR5//ATOPT6//SHB1//ATNLM2 GO:0015833 peptide transport BP 0.0237424129581057 ATOPT1//ATPTR5//ATOPT6//SHB1//ATNLM2 GO:0006882 cellular zinc ion homeostasis BP 0.0247296507819102 VHA-A2//ATCAX1 GO:0055069 zinc ion homeostasis BP 0.0247296507819102 VHA-A2//ATCAX1 GO:0072594 establishment of protein localization to... BP 0.0259595384678346 SVR7//AT5G41970//AT5G38890//ATTIP49A//GSA2//AtLa1//AT4G24750//AT3G18680//CRM1B//ATTIC110//ATPEX7//AT1G80245//ATCYP5//AT2G34357 GO:0009658 chloroplast organization BP 0.0259719905889749 SVR7//ATCPN21//FLN1//EDD//PHS1//AT4G24750//AT3G18680//ATTIC110 GO:0022607 cellular component assembly BP 0.0284204758924592 LBD18//AT1G67690//AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//FLN1//ATNAP1;1//AT4G26370//CP33//AT3G18680//CRM1B//MPPalpha//AT1G36390//EMB2719//ATECH2//AT1G02813//ACO3//VHA-A2//APG10 GO:0033365 protein localization to organelle BP 0.0294850613822169 SVR7//AT5G41970//AT5G38890//ATTIP49A//GSA2//AtLa1//AT4G24750//AT3G18680//CRM1B//ATTIC110//ATPEX7//AT1G80245//ATCYP5//AT2G34357 GO:0042886 amide transport BP 0.0306384889858267 ATOPT1//ATPTR5//ATOPT6//SHB1//ATNLM2 GO:0051510 regulation of unidimensional cell growth BP 0.0339737340049473 AT5G57950//CYC2BAT//AtPERK6//EMB2719 GO:0035966 response to topologically incorrect prot... BP 0.0354400691642851 AT5G61560//AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0009642 response to light intensity BP 0.0357086759475919 ATHS83//ATFKBP65//LOS4//PHS1//KAT2//AT4G07990//AT2G43630//HY3 GO:0055085 transmembrane transport BP 0.0366554551788138 AT5G62890//AT5G61520//ATOPT1//ATOPT6//ATNLM2//KAT2//AT3G23550//ATTIC110//ATPEX7//AT2G04070//VHA-A2//AST91//AT2G18480//ATCAX1//CAT5 GO:0006996 organelle organization BP 0.0404042381718028 LBD18//AT1G67690//SVR7//ATMAP70-2//ATCPN21//HOS15//AT5G41970//POLA3//AT5G38890//ATTIP49A//AT5G08500//ATCTIMC//FLN1//EDD//PHS1//ARAC7//ATNAP1;1//AT4G26370//AT4G24750//AT1G56210//CP33//AT3G18680//AT3G02640//CRM1B//AT1G36390//ATTIC110//ATPEX7//ATECH2//AT1G80245//ACO3//APG10//OTLD1//HY3//ATIPT2//HMR//ATCAX1//EMB2795 GO:0007623 circadian rhythm BP 0.0404256153644211 OEP6//AT4G34950//KAT2//FIO1//HY3 GO:0048511 rhythmic process BP 0.0404256153644211 OEP6//AT4G34950//KAT2//FIO1//HY3 GO:0022604 regulation of cell morphogenesis BP 0.0425253868356674 AT5G57950//CYC2BAT//AtPERK6//EMB2719 GO:0009057 macromolecule catabolic process BP 0.0440088128181633 ATGWD3//HOS15//AT5G57950//AtXRN2//ATTIP49A//AT5G11770//CYC2BAT//CI51//ATCTIMC//ATSS4//CRM1B//MPPalpha//EMB2719//ATECH2//ACO3 GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 0.0440641587922599 AT5G57950//CYC2BAT//ATCTIMC//EMB2719//ATECH2 GO:0009644 response to high light intensity BP 0.0446022866992029 ATHS83//ATFKBP65//LOS4//PHS1//KAT2//AT4G07990//AT2G43630 GO:0010498 proteasomal protein catabolic process BP 0.0489274532901268 AT5G57950//ATTIP49A//CYC2BAT//ATCTIMC//CRM1B//EMB2719//ATECH2 GO:0001558 regulation of cell growth BP 0.0496647231157819 AT5G57950//CYC2BAT//AtPERK6//EMB2719 GO:0000413 protein peptidyl-prolyl isomerization BP 0.0500992572565277 ATFKBP65//FKBP16-2 GO:0055076 transition metal ion homeostasis BP 0.0511679392399683 ACO3//VHA-A2//ATCAX1 GO:0055065 metal ion homeostasis BP 0.0547683225544109 ACO3//VHA-A2//HY3//ATCAX1 GO:0042775 mitochondrial ATP synthesis coupled elec... BP 0.0559481588411333 AT5G11770//CI51 GO:0000302 response to reactive oxygen species BP 0.0559543763175295 ATCPN21//ATHS83//ATFKBP65//LOS4//AT4G07990//LOL1//AT2G43630//ACO3 GO:0006406 mRNA export from nucleus BP 0.0582522905450295 LOS4//AtLa1//AT2G34357 GO:0051028 mRNA transport BP 0.0582522905450295 LOS4//AtLa1//AT2G34357 GO:0048522 positive regulation of cellular process BP 0.0603401880050671 LBD18//AT1G67690//SVR7//ATCPN21//HOS15//OEP6//FLN1//GSA2//AT4G26370//LOL1//AT3G18680//ATMYB65//POP4//HMR GO:0034660 ncRNA metabolic process BP 0.0607919710593328 AtXRN2//FLN1//GSA2//EDD//AtLa1//AT4G24750//AtTRM9//AT3G18680//AT1G72550//ATIPT2//POP4 GO:0043933 macromolecular complex subunit organizat... BP 0.0658612642241395 LBD18//AT1G67690//HOS15//AT5G57950//POLA3//ATTIP49A//AT5G11770//CYC2BAT//CI51//ATCTIMC//ARAC7//ATNAP1;1//AT1G56210//AT3G02640//CRM1B//MPPalpha//EMB2719//ATECH2//ACO3//VHA-A2//APG10//OTLD1//HY3//EMB2795 GO:0048440 carpel development BP 0.0674443767285061 ATCPN21//FLN1//EDD//CP33//AT3G18680//AT1G36390 GO:0015802 basic amino acid transport BP 0.0683085256172561 ATOPT1//CAT5 GO:0034614 cellular response to reactive oxygen spe... BP 0.0683085256172561 ATCPN21//LOL1 GO:0044265 cellular macromolecule catabolic process BP 0.0732190015530279 HOS15//AT5G57950//AtXRN2//ATTIP49A//AT5G11770//CYC2BAT//CI51//ATCTIMC//CRM1B//MPPalpha//EMB2719//ATECH2//ACO3 GO:0006913 nucleocytoplasmic transport BP 0.0737601418854244 AtRAN4//ATTIP49A//LOS4//AtLa1//CRM1B//AT2G34357 GO:0009853 photorespiration BP 0.0737601418854244 AT5G11770//CI51//ATCTIMC//MPPalpha//ACO3//AT2G31490 GO:0051169 nuclear transport BP 0.0737601418854244 AtRAN4//ATTIP49A//LOS4//AtLa1//CRM1B//AT2G34357 GO:0006833 water transport BP 0.0774414395142554 ATCTIMC//ATNLM2//ACO3//HY3//ATCAX1 GO:0042044 fluid transport BP 0.0774414395142554 ATCTIMC//ATNLM2//ACO3//HY3//ATCAX1 GO:0006403 RNA localization BP 0.077837291150086 LOS4//AtLa1//AT2G34357 GO:0006405 RNA export from nucleus BP 0.077837291150086 LOS4//AtLa1//AT2G34357 GO:0050657 nucleic acid transport BP 0.077837291150086 LOS4//AtLa1//AT2G34357 GO:0050658 RNA transport BP 0.077837291150086 LOS4//AtLa1//AT2G34357 GO:0051168 nuclear export BP 0.077837291150086 LOS4//AtLa1//AT2G34357 GO:0051236 establishment of RNA localization BP 0.077837291150086 LOS4//AtLa1//AT2G34357 GO:0009723 response to ethylene BP 0.0781526150295161 PDF1.2b//AT3G23550//ATMYB65//ACO3//TAT//ATPRB1 GO:0048467 gynoecium development BP 0.0781526150295161 ATCPN21//FLN1//EDD//CP33//AT3G18680//AT1G36390 GO:0051603 proteolysis involved in cellular protein... BP 0.0808193157220148 AT5G57950//ATTIP49A//AT5G11770//CYC2BAT//CI51//ATCTIMC//CRM1B//MPPalpha//EMB2719//ATECH2//ACO3 GO:0006487 protein N-linked glycosylation BP 0.0820596382270455 ABCA1//ACO3//AT2G13290 GO:0006875 cellular metal ion homeostasis BP 0.0820596382270455 VHA-A2//HY3//ATCAX1 GO:0006511 ubiquitin-dependent protein catabolic pr... BP 0.0862063117377 AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0006119 oxidative phosphorylation BP 0.0883150554588474 AT5G11770//CI51 GO:0010017 red or far-red light signaling pathway BP 0.0883150554588474 SHB1//HY3 GO:0042773 ATP synthesis coupled electron transport BP 0.0883150554588474 AT5G11770//CI51 GO:0010087 phloem or xylem histogenesis BP 0.0907924160594711 LBD18//TBL36//5PTASE13 GO:0019941 modification-dependent protein catabolic... BP 0.093351323242568 AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0043632 modification-dependent macromolecule cat... BP 0.093351323242568 AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//MPPalpha//EMB2719//ATECH2//ACO3 GO:0022603 regulation of anatomical structure morph... BP 0.094432657904818 AT5G57950//CYC2BAT//AtPERK6//EMB2719 GO:0098771 inorganic ion homeostasis BP 0.094432657904818 ACO3//VHA-A2//HY3//ATCAX1 GO:0006855 drug transmembrane transport BP 0.095327247316816 AT3G23550//AT2G04070 GO:0016043 cellular component organization BP 0.0957266981841971 LBD18//AT1G67690//SVR7//ATMAP70-2//ATCPN21//ATGWD3//HOS15//AT5G57950//ATOPT1//AT5G41970//POLA3//AT5G38890//ATTIP49A//AT5G11770//CYC2BAT//AT5G08500//CI51//ATPTR5//ATCTIMC//FLN1//EDD//PHS1//ARAC7//ATNAP1;1//AT4G26370//SHB1//AT4G24750//ATSS4//AT1G56210//CP33//AT3G18680//AtPERK6//AT3G02640//CRM1B//MPPalpha//AT1G36390//ATTIC110//ATPEX7//EMB2719//ATECH2//AT1G80245//AT1G02813//5PTASE13//ACO3//VHA-A2//APG10//OTLD1//HY3//ATIPT2//HMR//ATCAX1//EMB2795//SETH1 GO:0031325 positive regulation of cellular metaboli... BP 0.0970426699637548 SVR7//ATCPN21//HOS15//OEP6//FLN1//GSA2//AT4G26370//AT3G18680//ATMYB65//HMR GO:0042793 transcription from plastid promoter BP 0.0998940572539187 FLN1//AT4G26370//HMR GO:0043623 cellular protein complex assembly BP 0.100381643837781 LBD18//AT5G57950//AT5G11770//CYC2BAT//CI51//ATCTIMC//CRM1B//MPPalpha//EMB2719//ATECH2//ACO3//VHA-A2//APG10 GO:0034599 cellular response to oxidative stress BP 0.102492557140583 ATCPN21//LOL1 GO:0071489 cellular response to red or far red ligh... BP 0.102492557140583 SHB1//HY3 GO:0009630 gravitropism BP 0.105097964298504 AT5G61140//AT1G62020//OTLD1//HY3 GO:0006486 protein glycosylation BP 0.105541017095394 AT5G11770//AT3G15430//ABCA1//ACO3//AT2G13290 GO:0009101 glycoprotein biosynthetic process BP 0.105541017095394 AT5G11770//AT3G15430//ABCA1//ACO3//AT2G13290 GO:0043413 macromolecule glycosylation BP 0.105541017095394 AT5G11770//AT3G15430//ABCA1//ACO3//AT2G13290 GO:0009606 tropism BP 0.10877037565228 AT5G61140//AT1G62020//OTLD1//HY3 GO:0044257 cellular protein catabolic process BP 0.109747141170755 AT5G57950//ATTIP49A//AT5G11770//CYC2BAT//CI51//ATCTIMC//CRM1B//MPPalpha//EMB2719//ATECH2//ACO3 GO:0015893 drug transport BP 0.109800471109649 AT3G23550//AT2G04070 GO:0046916 cellular transition metal ion homeostasi... BP 0.109800471109649 VHA-A2//ATCAX1 GO:0009100 glycoprotein metabolic process BP 0.114833551854836 AT5G11770//AT3G15430//ABCA1//ACO3//AT2G13290 GO:0000038 very long-chain fatty acid metabolic pro... BP 0.117240870655903 KCS16//KCS8