GOID TERM ONTOLOGY pValue Genes GO:0045596 negative regulation of cell differentiat... BP 0.00256294913431283 AT4G28200//CCS52A2//ATNUP160//HDG2 GO:0010074 maintenance of meristem identity BP 0.0078923621755373 AT4G28200//CCS52A2//ATNUP160 GO:0009646 response to absence of light BP 0.00906775423543783 XBAT34//ATBCB//ATCAL4 GO:0051704 multi-organism process BP 0.00983620882176293 ARD//XBAT34//ATBCB//ATCAX3//AT5G57060//AT5G52020//AT5G46770//KAPP//ATMYB33//AT5G01650//ATATG6//GIG1//NodGS//AT3G48640//AT4G36010//ARO1//AT4G28200//AT4G26470//CRK5//UNE15//AtNUDT7//CCS52A2//AT1G33970//AT3G22060//ATCNGC20//AT1G13470//ADR2//ATLOX3//ATCNGC8//ACA1//EXL6//ATNUDT6//AT2G44920//ATWRKY25//AT2G19130 GO:0019827 stem cell maintenance BP 0.0147513290872116 AT4G28200//CCS52A2//ATNUP160 GO:0048864 stem cell development BP 0.0164232257911317 AT4G28200//CCS52A2//ATNUP160 GO:0050832 defense response to fungus BP 0.0171994816800216 XBAT34//ATBCB//AT5G52020//ATATG6//AT3G48640//AtNUDT7//ATCNGC20//AT1G13470//ADR2//ATNUDT6 GO:0042274 ribosomal small subunit biogenesis BP 0.0175135164528382 AT3G02560//AP40 GO:0055069 zinc ion homeostasis BP 0.0175135164528382 ATCAX3//ACA1 GO:0071483 cellular response to blue light BP 0.0175135164528382 HRB1//ATSIG6 GO:0006403 RNA localization BP 0.0181970102308953 AT4G28200//ATNUP160//AP40 GO:0006405 RNA export from nucleus BP 0.0181970102308953 AT4G28200//ATNUP160//AP40 GO:0048863 stem cell differentiation BP 0.0181970102308953 AT4G28200//CCS52A2//ATNUP160 GO:0050657 nucleic acid transport BP 0.0181970102308953 AT4G28200//ATNUP160//AP40 GO:0050658 RNA transport BP 0.0181970102308953 AT4G28200//ATNUP160//AP40 GO:0051236 establishment of RNA localization BP 0.0181970102308953 AT4G28200//ATNUP160//AP40 GO:0045935 positive regulation of nucleobase-contai... BP 0.0181979220574529 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0051173 positive regulation of nitrogen compound... BP 0.0186767694700515 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0048584 positive regulation of response to stimu... BP 0.0188788187899411 ATMYB33//AtNUDT7//EVR//ATNUDT6 GO:0051168 nuclear export BP 0.0200730975624852 AT4G28200//ATNUP160//AP40 GO:0009617 response to bacterium BP 0.0202061047036805 XBAT34//AT5G57060//KAPP//NodGS//AT3G48640//CRK5//AtNUDT7//AT1G33970//AT3G22060//ATCNGC20//AT1G13470//ATNUDT6//AT2G44920//ATWRKY25 GO:0010073 meristem maintenance BP 0.0207909342391288 AT3G55720//AT4G28200//FEY//CCS52A2//ATNUP160//BIO2 GO:0051093 negative regulation of developmental pro... BP 0.0234569957878137 AT4G28200//CCS52A2//ATNUP160//EVR//HDG2 GO:0010557 positive regulation of macromolecule bio... BP 0.0239942576115383 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0070925 organelle assembly BP 0.0241329911421145 ATATG6//AP40//AtTPX2 GO:0045595 regulation of cell differentiation BP 0.0244707428586653 AT4G28200//CCS52A2//ATNUP160//HDG2 GO:0010942 positive regulation of cell death BP 0.0249920398136103 ATMYB33//EVR GO:0032875 regulation of DNA endoreduplication BP 0.0249920398136103 GIG1//CCS52A2 GO:0090329 regulation of DNA-dependent DNA replicat... BP 0.0249920398136103 GIG1//CCS52A2 GO:0009642 response to light intensity BP 0.0254826277221943 XBAT34//ATBCB//TIN1//LPPepsilon1//ISPF//ATLOX3//PRIN2//ATCAL4 GO:0072503 cellular divalent inorganic cation homeo... BP 0.0263168045253084 ATCAX3//ATGLR3.3//ACA1 GO:0046907 intracellular transport BP 0.026757837185673 XBAT34//SECE1//VPS26A//AT5G17670//ATATG6//AP-3//FAR8//AT4G28570//AT4G28200//AT4G27130//AtNUDT7//ATRABA1B//ATNUP160//ATPDIL5-1//ATCNGC20//PDE320//AP40//NTL//ATNUDT6//TNO1//AT2G46490//ATCAL4//ATWRKY25 GO:0031328 positive regulation of cellular biosynth... BP 0.0270334195269745 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0051649 establishment of localization in cell BP 0.0278456812466402 XBAT34//SECE1//VPS26A//AT5G17670//ATATG6//AT3G60370//AP-3//FAR8//AT4G28570//AT4G28200//AT4G27130//AtNUDT7//ATRABA1B//ATNUP160//ATPDIL5-1//ATCNGC20//PDE320//AP40//NTL//ATSIG6//ATNUDT6//TNO1//AT2G46490//ATCAL4//ATWRKY25 GO:1902582 single-organism intracellular transport BP 0.027980105433147 XBAT34//SECE1//VPS26A//ATATG6//AP-3//FAR8//AT4G28570//AT4G28200//AT4G27130//AtNUDT7//ATNUP160//ATPDIL5-1//ATCNGC20//PDE320//AP40//NTL//ATNUDT6//TNO1//AT2G46490//ATCAL4//ATWRKY25 GO:0048522 positive regulation of cellular process BP 0.0284860474960095 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//EVR//ATSIG6//ATNUDT6//AtTPX2 GO:0007000 nucleolus organization BP 0.0291351057044814 ATPDIL5-1//ATH7 GO:0006261 DNA-dependent DNA replication BP 0.0292560202726656 RECQSIM//GIG1//CCS52A2//AtTPX2 GO:0006275 regulation of DNA replication BP 0.0292560202726656 RECQSIM//GIG1//CCS52A2//AtTPX2 GO:0010310 regulation of hydrogen peroxide metaboli... BP 0.0293868068513281 ARD//XBAT34//AT3G48640//AtNUDT7//ATCNGC20//AT1G13470//ATNUDT6 GO:0010604 positive regulation of macromolecule met... BP 0.0296582124898146 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0016109 tetraterpenoid biosynthetic process BP 0.0296993489684713 DXR//ISPF//PAC//ATSIG6//AT2G44920 GO:0016117 carotenoid biosynthetic process BP 0.0296993489684713 DXR//ISPF//PAC//ATSIG6//AT2G44920 GO:0009658 chloroplast organization BP 0.030517513513831 LSU2//AT3G60370//FLN1//AtCNFU1//Cpn60beta2//PAC//ATSIG6//STY8 GO:0014070 response to organic cyclic compound BP 0.0312608761908844 ARD//XBAT34//AT3G48640//AT4G28200//AT4G26470//CRK5//AtNUDT7//AT3G17120//ATCNGC20//SDE5//AT1G13470//ATAUX2-27//UGT74E2//TTL3//ATNUDT6//ATWRKY25 GO:0051726 regulation of cell cycle BP 0.032186864864559 RECQSIM//GIG1//CYCD3;3//CCS52A2//AT1G22270//AtTPX2 GO:0051052 regulation of DNA metabolic process BP 0.0324629144899481 RECQSIM//GIG1//ATSRS2//CCS52A2//AtTPX2 GO:0031325 positive regulation of cellular metaboli... BP 0.0331905288147587 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0044703 multi-organism reproductive process BP 0.0342578191256547 AT5G46770//ATMYB33//ATATG6//GIG1//ARO1//AT4G28200//AT4G26470//UNE15//CCS52A2//ATCNGC8//EXL6//AT2G19130 GO:0016108 tetraterpenoid metabolic process BP 0.0353820845194061 DXR//ISPF//PAC//ATSIG6//AT2G44920 GO:0016116 carotenoid metabolic process BP 0.0353820845194061 DXR//ISPF//PAC//ATSIG6//AT2G44920 GO:0006997 nucleus organization BP 0.0360712035461946 AT4G28200//ATPDIL5-1//ATH7 GO:0072507 divalent inorganic cation homeostasis BP 0.0360712035461946 ATCAX3//ATGLR3.3//ACA1 GO:0045893 positive regulation of transcription, DN... BP 0.0363059671846854 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//AT3G20680//ISPF//ATSIG6 GO:0051254 positive regulation of RNA metabolic pro... BP 0.0363059671846854 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//AT3G20680//ISPF//ATSIG6 GO:1902680 positive regulation of RNA biosynthetic ... BP 0.0363059671846854 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//AT3G20680//ISPF//ATSIG6 GO:1903508 positive regulation of nucleic acid-temp... BP 0.0363059671846854 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//AT3G20680//ISPF//ATSIG6 GO:2000377 regulation of reactive oxygen species me... BP 0.0367549332988527 ARD//XBAT34//AT3G48640//AtNUDT7//ATCNGC20//AT1G13470//ATNUDT6 GO:0019953 sexual reproduction BP 0.0371726392760031 ATMYB33//GIG1//AT4G28200//UNE15//CCS52A2//EXL6 GO:0009862 systemic acquired resistance, salicylic ... BP 0.0372098286260488 ARD//XBAT34//AT3G48640//AtNUDT7//ATCNGC20//AT1G13470//ATNUDT6//ATWRKY25 GO:0006606 protein import into nucleus BP 0.0383836415133344 FAR8//AT4G28200//ATNUP160//NTL GO:0044744 protein targeting to nucleus BP 0.0383836415133344 FAR8//AT4G28200//ATNUP160//NTL GO:1902593 single-organism nuclear import BP 0.0383836415133344 FAR8//AT4G28200//ATNUP160//NTL GO:0006913 nucleocytoplasmic transport BP 0.040056341220314 FAR8//AT4G28200//ATNUP160//AP40//NTL GO:0051169 nuclear transport BP 0.040056341220314 FAR8//AT4G28200//ATNUP160//AP40//NTL GO:0034504 protein localization to nucleus BP 0.0403835826597912 FAR8//AT4G28200//ATNUP160//NTL GO:0051170 nuclear import BP 0.0403835826597912 FAR8//AT4G28200//ATNUP160//NTL GO:0042742 defense response to bacterium BP 0.0406866870356521 XBAT34//AT5G57060//KAPP//AT3G48640//CRK5//AtNUDT7//ATCNGC20//AT1G13470//ATNUDT6//AT2G44920 GO:0009607 response to biotic stimulus BP 0.0423990028100862 ARD//XBAT34//ATBCB//ATCAX3//AT5G57060//AT5G52020//KAPP//AT5G01650//ATATG6//NodGS//AT3G48640//AT4G36010//CRK5//AtNUDT7//AT1G33970//AT3G22060//ATCNGC20//AT1G13470//ADR2//ATLOX3//ACA1//ATNUDT6//AT2G44920//ATWRKY25 GO:0043207 response to external biotic stimulus BP 0.0423990028100862 ARD//XBAT34//ATBCB//ATCAX3//AT5G57060//AT5G52020//KAPP//AT5G01650//ATATG6//NodGS//AT3G48640//AT4G36010//CRK5//AtNUDT7//AT1G33970//AT3G22060//ATCNGC20//AT1G13470//ADR2//ATLOX3//ACA1//ATNUDT6//AT2G44920//ATWRKY25 GO:0051707 response to other organism BP 0.0423990028100862 ARD//XBAT34//ATBCB//ATCAX3//AT5G57060//AT5G52020//KAPP//AT5G01650//ATATG6//NodGS//AT3G48640//AT4G36010//CRK5//AtNUDT7//AT1G33970//AT3G22060//ATCNGC20//AT1G13470//ADR2//ATLOX3//ACA1//ATNUDT6//AT2G44920//ATWRKY25 GO:0007034 vacuolar transport BP 0.0424418254334304 VPS26A//ATATG6//AP-3//TNO1 GO:0006952 defense response BP 0.0428157406770483 ARD//XBAT34//ATBCB//PROPEP3//AT5G57060//AT5G52020//AT5G46450//LSU2//KAPP//AT5G01650//ATATG6//NodGS//ZAR1//AT3G48640//CRK5//AtNUDT7//ATGLR3.3//ATCNGC20//AT1G13470//ADR2//ATLOX3//AT1G72940//EVR//ATNUDT6//AT2G44920//ATCAL4//ATWRKY25 GO:0009620 response to fungus BP 0.0428673548243495 XBAT34//ATBCB//AT5G52020//ATATG6//AT3G48640//AtNUDT7//ATCNGC20//AT1G13470//ADR2//ATLOX3//ATNUDT6 GO:0009967 positive regulation of signal transducti... BP 0.0430288110489558 ATMYB33//ATNUDT6 GO:0023056 positive regulation of signaling BP 0.0430288110489558 ATMYB33//ATNUDT6 GO:0036294 cellular response to decreased oxygen le... BP 0.0430288110489558 PROPEP3//AT1G14550 GO:0071453 cellular response to oxygen levels BP 0.0430288110489558 PROPEP3//AT1G14550 GO:0071456 cellular response to hypoxia BP 0.0430288110489558 PROPEP3//AT1G14550 GO:0016114 terpenoid biosynthetic process BP 0.0436808540663673 DXR//CPH//ATMYB33//ATTIM23-3//ISPF//PAC//ATSIG6//AT2G44920 GO:0042023 DNA endoreduplication BP 0.0445583570682191 GIG1//CYCD3;3//CCS52A2//AtTPX2 GO:0044786 cell cycle DNA replication BP 0.0445583570682191 GIG1//CYCD3;3//CCS52A2//AtTPX2 GO:0007049 cell cycle BP 0.0451713031895346 RECQSIM//KAPP//GIG1//CYCD3;3//FAR8//AT4G28200//NZZ//ATSRS2//CCS52A2//AT1G22270//HEI10//AtTPX2 GO:0048193 Golgi vesicle transport BP 0.0452508245298976 VPS26A//AP-3//AT4G28570//AT4G27130//ATPDIL5-1//PDE320//AT2G46490 GO:0051641 cellular localization BP 0.0457668868346421 XBAT34//SECE1//VPS26A//AT5G17670//ATATG6//AT3G60370//AP-3//FAR8//AT4G28570//AT4G28200//AT4G27130//AtNUDT7//ATRABA1B//ATNUP160//ATPDIL5-1//ATCNGC20//PDE320//AP40//NTL//ATSIG6//ATNUDT6//TNO1//AT2G46490//ATCAL4//ATWRKY25 GO:0009084 glutamine family amino acid biosynthetic... BP 0.0481086998359235 AT5G10920//NodGS GO:0010647 positive regulation of cell communicatio... BP 0.0481086998359235 ATMYB33//ATNUDT6 GO:0046916 cellular transition metal ion homeostasi... BP 0.0481086998359235 ATCAX3//ACA1 GO:0010628 positive regulation of gene expression BP 0.0484295760726883 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//AT3G20680//ISPF//ATSIG6 GO:0006413 translational initiation BP 0.0505081257763444 ATTIF3K1//AT4G27130//AT1G77840 GO:0072593 reactive oxygen species metabolic proces... BP 0.0511186829400708 ARD//XBAT34//DXR//AT3G48640//AtNUDT7//ATCNGC20//AT1G13470//GNR1//ATNUDT6 GO:0000280 nuclear division BP 0.0517126446053325 GIG1//ATSRS2//ATPDIL5-1//HEI10//ATH7//AtTPX2 GO:0006270 DNA replication initiation BP 0.0533941191684848 RECQSIM//AtTPX2 GO:0010351 lithium ion transport BP 0.0533941191684848 ATCAX3//PDE320 GO:0009624 response to nematode BP 0.0536852491713114 ATCAX3//ATCNGC20//ACA1 GO:0000003 reproduction BP 0.0619051462285359 ATMYB33//GIG1//FAR8//AT4G28200//NZZ//ATSRS2//UNE15//CCS52A2//HEI10//ATLOX3//EXL6 GO:0009451 RNA modification BP 0.0648226285655447 AT5G64380//AT3G60770//AT3G59540//AT3G44590//AT4G28200//AT3G06950//AP40//MEF9//AT2G17972 GO:0009891 positive regulation of biosynthetic proc... BP 0.0653492475482259 GSA1//AT5G52020//LSU2//ATMYB33//AT3G60370//FLN1//AT4G28200//CCS52A2//AT3G20680//ISPF//ATSIG6 GO:0072330 monocarboxylic acid biosynthetic process BP 0.0659857358591345 XBAT34//ATBCB//DXR//NodGS//AT3G48640//AtNUDT7//HEME1//ATCNGC20//AT1G13470//ISPF//BIO2//ATLOX3//ATNUDT6//AT2G44920 GO:0048653 anther development BP 0.0673179506942763 NZZ//BIO2//ATLOX3