4.0:Analysis result:Information of module
| phyB mutant 22C 10hrs |
Top 100 most enriched GO terms
| GOID/Term | Ontology | p-value | Genes |
|---|---|---|---|
| GO:0044106 cellular amine metabolic process | BP | 8.857e-05 | ATSPDS3 ATNAS1 ATPAL2 AKN2 EOL1 PGDH AtSAM1 AT2G04400 CYP79B3 |
| GO:0009074 aromatic amino acid family catabolic pro... | BP | 1.181e-04 | ATPAL2 AKN2 PAL4 PGDH AT2G04400 CYP79B3 |
| GO:0009308 amine metabolic process | BP | 2.262e-04 | ATSPDS3 ATNAS1 ATPAL2 AKN2 EOL1 RGLG1 PGDH AtSAM1 AT2G04400 CYP79B3 |
| GO:0009628 response to abiotic stimulus | BP | 2.403e-04 | DELTA-TIP2 XLG3 ANNAT2 GTR2 ATHB52 AT5G51440 HAT2 CI76 FAR1 AT-HSP17.6A ATUBA2 AtCHIL DAG1 AtSAC9 ATPAL2 LTI30 AT3G45190 IAA29 ENP AT4G27450 DDB1B BAM3 AtENODL19 Hop3 AtSAM2 ABCB19 AT3G18190 ATTSO1 LBD41 VTC4 TPR10 CLI1 RGLG1 FBI1 AtSAM1 SR45a AT1G54050 MAX2 AT1G61890 ATGLR2 TUB7 AT2G41040 AtAUX1 |
| GO:0009684 indoleacetic acid biosynthetic process | BP | 2.851e-04 | AKN2 APR PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0006576 cellular biogenic amine metabolic proces... | BP | 2.980e-04 | ATSPDS3 ATNAS1 ATPAL2 AKN2 PGDH AtSAM1 AT2G04400 CYP79B3 |
| GO:0009683 indoleacetic acid metabolic process | BP | 3.253e-04 | AKN2 APR PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0044550 secondary metabolite biosynthetic proces... | BP | 3.397e-04 | ATPRR1 FAR1 ATPAL2 AKN2 BASS5 APR VTC4 ATSOT18 AtSAM1 CYP79B3 UCC2 |
| GO:1901606 alpha-amino acid catabolic process | BP | 3.576e-04 | ATPAL2 AKN2 PAL4 PGDH ASP4 AT2G04400 CYP79B3 |
| GO:0009063 cellular amino acid catabolic process | BP | 3.958e-04 | ATPAL2 AKN2 PAL4 PGDH ASP4 AT2G04400 CYP79B3 |
| GO:0009850 auxin metabolic process | BP | 3.958e-04 | AKN2 APR RGLG1 PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0050896 response to stimulus | BP | 4.293e-04 | DELTA-TIP2 EXL4 XLG3 AT1G48900 IAA9 ANNAT2 GTR2 DFL1 ATHB52 ATMLO11 ATSPDS3 AT5G53500 AT5G51440 HAT2 AGD9 HMA7 CI76 FAR1 AT-HSP17.6A ATDGK1 ATUBA2 AtCHIL ATNAS1 DAG1 AtSAC9 ATPAL2 LTI30 AT3G46810 AT3G45190 AKN2 AT4G38690 IAA29 ENP AT4G27450 ATYSL1 AT4G23680 DDB1B BAM3 AtENODL19 Hop3 BASS5 EOL1 AT4G01910 AtSAM2 ARF11 ABCB19 AT3G12710 RNR2 AT3G18190 ATTSO1 LBD41 VTC4 TPR10 CLI1 NPC3 RGLG1 PGDH FBI1 MLP165 LYM1 SKP2A AtSAM1 AT1G01260 SR45a NRT1.9 AT1G54050 MAX2 AT2G04400 CYP79B3 AT1G61890 ATGLR2 AT2G35760 LCR69 TUB7 AT2G41380 UCC2 AT2G41040 AtAUX1 AT2G26690 |
| GO:0006950 response to stress | BP | 5.099e-04 | DELTA-TIP2 EXL4 AT1G48900 IAA9 ANNAT2 ATMLO11 ATSPDS3 AT5G51440 HMA7 CI76 FAR1 AT-HSP17.6A ATUBA2 ATNAS1 AtSAC9 ATPAL2 LTI30 AT3G45190 AKN2 AT4G27450 AT4G23680 DDB1B AtENODL19 Hop3 BASS5 EOL1 AtSAM2 ABCB19 AT3G12710 RNR2 AT3G18190 ATTSO1 LBD41 VTC4 TPR10 CLI1 NPC3 RGLG1 PGDH MLP165 AtSAM1 NRT1.9 AT1G54050 MAX2 AT2G04400 CYP79B3 AT1G61890 LCR69 TUB7 UCC2 AT2G26690 |
| GO:0010817 regulation of hormone levels | BP | 5.216e-04 | ANNAT2 AKN2 ENP BAM3 APR ABCB19 RGLG1 PGDH ATSOT18 MAX2 AT2G04400 CYP79B3 AtAUX1 |
| GO:0009310 amine catabolic process | BP | 6.690e-04 | ATPAL2 AKN2 PGDH AtSAM1 AT2G04400 CYP79B3 |
| GO:0042402 cellular biogenic amine catabolic proces... | BP | 6.690e-04 | ATPAL2 AKN2 PGDH AtSAM1 AT2G04400 CYP79B3 |
| GO:0009851 auxin biosynthetic process | BP | 7.466e-04 | AKN2 APR PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:1901659 glycosyl compound biosynthetic process | BP | 7.808e-04 | HMA7 AKN2 BASS5 APR AtSAM2 VTC4 ATSOT18 AtSAM1 CYP79B3 |
| GO:1901565 organonitrogen compound catabolic proces... | BP | 8.871e-04 | ATPAL2 AKN2 PAL4 PGDH AtSAM1 ASP4 AT2G04400 CYP79B3 AT2G35760 |
| GO:0034754 cellular hormone metabolic process | BP | 9.859e-04 | AKN2 APR RGLG1 PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0009642 response to light intensity | BP | 1.005e-03 | ATHB52 AT5G51440 AT-HSP17.6A AtSAC9 Hop3 TPR10 FBI1 SR45a AT1G54050 |
| GO:0042435 indole-containing compound biosynthetic ... | BP | 1.128e-03 | AKN2 APR PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0080167 response to karrikin | BP | 1.368e-03 | GTR2 AtCHIL ATPAL2 VTC4 AT1G61890 AT2G41040 |
| GO:0042430 indole-containing compound metabolic pro... | BP | 2.137e-03 | AKN2 APR PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:1901657 glycosyl compound metabolic process | BP | 2.178e-03 | HMA7 CI76 AKN2 BASS5 APR AtSAM2 VTC4 ATSOT18 AtSAM1 CYP79B3 |
| GO:0006949 syncytium formation | BP | 2.556e-03 | AT4G24780 ATEXP8 AtAUX1 |
| GO:0010232 vascular transport | BP | 2.556e-03 | GTR2 ATNAS1 NRT1.9 |
| GO:0010233 phloem transport | BP | 2.556e-03 | GTR2 ATNAS1 NRT1.9 |
| GO:0010039 response to iron ion | BP | 2.690e-03 | ATNAS1 ATYSL1 AtSAM2 AtSAM1 |
| GO:0071365 cellular response to auxin stimulus | BP | 2.690e-03 | IAA9 DFL1 HAT2 SKP2A |
| GO:0006569 tryptophan catabolic process | BP | 3.518e-03 | AKN2 PGDH AT2G04400 CYP79B3 |
| GO:0042436 indole-containing compound catabolic pro... | BP | 3.518e-03 | AKN2 PGDH AT2G04400 CYP79B3 |
| GO:0046218 indolalkylamine catabolic process | BP | 3.518e-03 | AKN2 PGDH AT2G04400 CYP79B3 |
| GO:0009314 response to radiation | BP | 4.421e-03 | ATHB52 AT5G51440 HAT2 AT-HSP17.6A ATUBA2 AtCHIL DAG1 AtSAC9 IAA29 ENP DDB1B BAM3 Hop3 ABCB19 ATTSO1 TPR10 FBI1 SR45a AT1G54050 MAX2 ATGLR2 AtAUX1 |
| GO:0009416 response to light stimulus | BP | 4.432e-03 | ATHB52 AT5G51440 HAT2 AT-HSP17.6A ATUBA2 AtCHIL DAG1 AtSAC9 IAA29 ENP DDB1B BAM3 Hop3 ABCB19 TPR10 FBI1 SR45a AT1G54050 MAX2 ATGLR2 AtAUX1 |
| GO:0071281 cellular response to iron ion | BP | 4.768e-03 | ATNAS1 AtSAM2 AtSAM1 |
| GO:0048646 anatomical structure formation involved ... | BP | 4.951e-03 | DRL1 AT4G24780 ATEXP8 AT2G33640 ARF11 ABCB19 ATTSO1 AT1G63100 LYM1 SKP2A AtAUX1 |
| GO:0042398 cellular modified amino acid biosyntheti... | BP | 5.060e-03 | AtCHIL ATPAL2 AtSAM2 AtSAM1 |
| GO:0006857 oligopeptide transport | BP | 5.079e-03 | GTR2 AT5G39990 ATYSL1 NRT1.9 AT2G26690 |
| GO:0015833 peptide transport | BP | 5.079e-03 | GTR2 AT5G39990 ATYSL1 NRT1.9 AT2G26690 |
| GO:0019748 secondary metabolic process | BP | 5.618e-03 | ATPRR1 FAR1 ATPAL2 AKN2 BASS5 APR VTC4 CLI1 ATSOT18 AtSAM1 CYP79B3 AT2G41380 UCC2 |
| GO:0071248 cellular response to metal ion | BP | 5.697e-03 | ATNAS1 AtSAM2 AtSAM1 |
| GO:0009644 response to high light intensity | BP | 5.747e-03 | AT5G51440 AT-HSP17.6A AtSAC9 Hop3 TPR10 SR45a AT1G54050 |
| GO:1901605 alpha-amino acid metabolic process | BP | 5.835e-03 | AT3G54080 ATPAL2 AKN2 APR EOL1 PAL4 PGDH ATSOT18 AtSAM1 ASP4 AT2G04400 CYP79B3 |
| GO:0016144 S-glycoside biosynthetic process | BP | 6.420e-03 | AKN2 BASS5 APR VTC4 ATSOT18 CYP79B3 |
| GO:0019758 glycosinolate biosynthetic process | BP | 6.420e-03 | AKN2 BASS5 APR VTC4 ATSOT18 CYP79B3 |
| GO:0019761 glucosinolate biosynthetic process | BP | 6.420e-03 | AKN2 BASS5 APR VTC4 ATSOT18 CYP79B3 |
| GO:0048527 lateral root development | BP | 6.486e-03 | JKD ARF11 ABCB19 SKP2A AtAUX1 |
| GO:0071241 cellular response to inorganic substance | BP | 6.727e-03 | ATNAS1 AtSAM2 AtSAM1 |
| GO:0042886 amide transport | BP | 7.010e-03 | GTR2 AT5G39990 ATYSL1 NRT1.9 AT2G26690 |
| GO:0044282 small molecule catabolic process | BP | 7.361e-03 | ATPAL2 AKN2 ATMFDX2 VTC4 PAL4 PGDH ASP4 AT2G04400 CYP79B3 AtCYS2 |
| GO:0010311 lateral root formation | BP | 7.861e-03 | ARF11 SKP2A AtAUX1 |
| GO:0009072 aromatic amino acid family metabolic pro... | BP | 8.712e-03 | ATPAL2 AKN2 PAL4 PGDH AT2G04400 CYP79B3 |
| GO:0010035 response to inorganic substance | BP | 9.801e-03 | DELTA-TIP2 ANNAT2 AT5G51440 HMA7 AT-HSP17.6A ATNAS1 LTI30 ATYSL1 Hop3 AtSAM2 AT3G18190 TPR10 CLI1 RGLG1 AtSAM1 NRT1.9 AT1G54050 MAX2 TUB7 AT2G41380 UCC2 |
| GO:0016143 S-glycoside metabolic process | BP | 1.034e-02 | AKN2 BASS5 APR VTC4 ATSOT18 CYP79B3 |
| GO:0019757 glycosinolate metabolic process | BP | 1.034e-02 | AKN2 BASS5 APR VTC4 ATSOT18 CYP79B3 |
| GO:0019760 glucosinolate metabolic process | BP | 1.034e-02 | AKN2 BASS5 APR VTC4 ATSOT18 CYP79B3 |
| GO:0009309 amine biosynthetic process | BP | 1.045e-02 | ATSPDS3 ATNAS1 AT2G04400 |
| GO:0042401 cellular biogenic amine biosynthetic pro... | BP | 1.045e-02 | ATSPDS3 ATNAS1 AT2G04400 |
| GO:0006568 tryptophan metabolic process | BP | 1.122e-02 | AKN2 PGDH AT2G04400 CYP79B3 |
| GO:0006586 indolalkylamine metabolic process | BP | 1.122e-02 | AKN2 PGDH AT2G04400 CYP79B3 |
| GO:0044272 sulfur compound biosynthetic process | BP | 1.123e-02 | AT3G54080 AKN2 BASS5 APR EOL1 AtSAM2 VTC4 ATSOT18 AtSAM1 CYP79B3 |
| GO:0048528 post-embryonic root development | BP | 1.153e-02 | JKD ARF11 ABCB19 SKP2A AtAUX1 |
| GO:0072330 monocarboxylic acid biosynthetic process | BP | 1.180e-02 | ATNAS1 AKN2 ATNCED2 APR PGDH ATSOT18 AT2G04400 LACS8 CYP79B3 |
| GO:0042445 hormone metabolic process | BP | 1.202e-02 | ANNAT2 AKN2 APR RGLG1 PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0016054 organic acid catabolic process | BP | 1.302e-02 | ATPAL2 AKN2 PAL4 PGDH ASP4 AT2G04400 CYP79B3 AtCYS2 |
| GO:0046395 carboxylic acid catabolic process | BP | 1.302e-02 | ATPAL2 AKN2 PAL4 PGDH ASP4 AT2G04400 CYP79B3 AtCYS2 |
| GO:0044248 cellular catabolic process | BP | 1.328e-02 | ATATG3 CI76 ATUBA2 ATPAL2 AT3G45190 AKN2 ATMFDX2 AT3G18190 VTC4 PAL4 PGDH AT1G80570 LYM1 SKP2A ASP4 MAX2 AT2G04400 CYP79B3 AtCYS2 AT2G35760 TUB7 AT2G41380 |
| GO:0006575 cellular modified amino acid metabolic p... | BP | 1.329e-02 | AtCHIL ATPAL2 AtSAM2 AtSAM1 |
| GO:0009734 auxin-activated signaling pathway | BP | 1.347e-02 | IAA9 DFL1 HAT2 |
| GO:0010101 post-embryonic root morphogenesis | BP | 1.347e-02 | ARF11 SKP2A AtAUX1 |
| GO:0010102 lateral root morphogenesis | BP | 1.347e-02 | ARF11 SKP2A AtAUX1 |
| GO:0019439 aromatic compound catabolic process | BP | 1.407e-02 | ATPAL2 AT3G45190 AKN2 PAL4 PGDH AT2G04400 CYP79B3 AT2G35760 |
| GO:0051716 cellular response to stimulus | BP | 1.438e-02 | XLG3 AT1G48900 IAA9 DFL1 AT5G53500 AT5G51440 HAT2 HMA7 AT-HSP17.6A ATDGK1 ATUBA2 ATNAS1 AtSAC9 AT3G46810 AT4G38690 AT4G27450 DDB1B BAM3 Hop3 EOL1 AT4G01910 AtSAM2 AT3G12710 RNR2 ATTSO1 LBD41 TPR10 CLI1 NPC3 PGDH FBI1 SKP2A AtSAM1 NRT1.9 AT2G04400 CYP79B3 |
| GO:0042446 hormone biosynthetic process | BP | 1.457e-02 | ANNAT2 AKN2 APR PGDH ATSOT18 AT2G04400 CYP79B3 |
| GO:0009069 serine family amino acid metabolic proce... | BP | 1.496e-02 | APR EOL1 PGDH ATSOT18 AtSAM1 CYP79B3 |
| GO:0065008 regulation of biological quality | BP | 1.533e-02 | IAA9 ANNAT2 DFL1 ATUBA2 AKN2 ENP BAM3 APR EOL1 ARF11 ABCB19 ATTSO1 RGLG1 PGDH ATSOT18 MAX2 AT2G04400 CYP79B3 ATGLR2 AtAUX1 AT2G26690 |
| GO:0009699 phenylpropanoid biosynthetic process | BP | 1.673e-02 | ATPRR1 FAR1 ATPAL2 AtSAM1 UCC2 |
| GO:1901361 organic cyclic compound catabolic proces... | BP | 1.698e-02 | ATPAL2 AT3G45190 AKN2 PAL4 PGDH AT2G04400 CYP79B3 AT2G35760 |
| GO:0009698 phenylpropanoid metabolic process | BP | 1.816e-02 | ATPRR1 FAR1 ATPAL2 CLI1 AtSAM1 UCC2 |
| GO:0016053 organic acid biosynthetic process | BP | 2.077e-02 | ATNAS1 AT3G54080 AKN2 ATNCED2 APR EOL1 VTC4 PGDH ATSOT18 AtSAM1 ASP4 AT2G04400 LACS8 CYP79B3 |
| GO:0046394 carboxylic acid biosynthetic process | BP | 2.077e-02 | ATNAS1 AT3G54080 AKN2 ATNCED2 APR EOL1 VTC4 PGDH ATSOT18 AtSAM1 ASP4 AT2G04400 LACS8 CYP79B3 |
| GO:0098542 defense response to other organism | BP | 2.111e-02 | EXL4 AT1G48900 IAA9 ATSPDS3 LTI30 AKN2 AT4G27450 EOL1 LBD41 PGDH MAX2 AT2G04400 CYP79B3 |
| GO:0048645 organ formation | BP | 2.328e-02 | AT2G33640 ARF11 ABCB19 ATTSO1 AT1G63100 LYM1 SKP2A AtAUX1 |
| GO:0000103 sulfate assimilation | BP | 2.331e-02 | AKN2 APR |
| GO:0006558 L-phenylalanine metabolic process | BP | 2.331e-02 | ATPAL2 PAL4 |
| GO:0009934 regulation of meristem structural organi... | BP | 2.331e-02 | ATTSO1 MAX2 |
| GO:0009958 positive gravitropism | BP | 2.331e-02 | ABCB19 AtAUX1 |
| GO:1902221 erythrose 4-phosphate/phosphoenolpyruvat... | BP | 2.331e-02 | ATPAL2 PAL4 |
| GO:0009914 hormone transport | BP | 2.389e-02 | ENP ABCB19 MAX2 AtAUX1 |
| GO:0009926 auxin polar transport | BP | 2.389e-02 | ENP ABCB19 MAX2 AtAUX1 |
| GO:0060918 auxin transport | BP | 2.389e-02 | ENP ABCB19 MAX2 AtAUX1 |
| GO:0044283 small molecule biosynthetic process | BP | 2.391e-02 | AT5G21100 ANNAT2 ATNAS1 AT3G54080 AKN2 ATNCED2 APR EOL1 VTC4 PGDH ATSOT18 AtSAM1 ATICS2 ASP4 AT2G04400 LACS8 CYP79B3 ATCB5-B |
| GO:0006595 polyamine metabolic process | BP | 2.525e-02 | ATSPDS3 ATPAL2 AtSAM1 |
| GO:0009070 serine family amino acid biosynthetic pr... | BP | 2.579e-02 | APR PGDH ATSOT18 AtSAM1 CYP79B3 |
| GO:0006790 sulfur compound metabolic process | BP | 2.710e-02 | ANNAT2 AT3G54080 AKN2 BASS5 APR EOL1 AtSAM2 VTC4 ATSOT18 AtSAM1 CYP79B3 |
| GO:1902578 single-organism localization | BP | 2.714e-02 | DELTA-TIP2 AT1G48900 ANNAT2 GTR2 ATATG3 AT5G54910 HMA7 AT5G39990 AT5G05960 ATNAS1 AT5G02180 AT5G01870 AT3G53980 AT3G48970 AT4G33550 ENP ATYSL1 CRF2 AtENODL19 BASS5 ATTOC75-IV AT4G01910 ABCB19 PGDH AtSAM1 NRT1.9 MAX2 CYP79B3 AT1G61890 UCC2 AT2G34190 AtAUX1 AT2G26690 |
| GO:0042762 regulation of sulfur metabolic process | BP | 2.757e-02 | AKN2 EOL1 |
| GO:0032787 monocarboxylic acid metabolic process | BP | 2.842e-02 | ATNAS1 AKN2 ATMFDX2 ATNCED2 APR AT3G18190 VTC4 PGDH ATSOT18 AtSAM1 AT1G01260 AT2G04400 LACS8 CYP79B3 AT1G61890 AtCYS2 |
| GO:0009108 coenzyme biosynthetic process | BP | 2.888e-02 | AtSAM2 AtSAM1 ATICS2 CYP79B3 |