GOID TERM ONTOLOGY pValue Genes GO:0051726 regulation of cell cycle BP 0.00114323566889629 AT3G56870//CHR24//AtMAD1//DDB1B//EDA8//BUBR1//SNL1//ATMCM2//CYCB2;4 GO:0046488 phosphatidylinositol metabolic process BP 0.00154263336901525 AT5G14850//SETH2//FAB1D//AT1G65510//AtOZF1 GO:0009247 glycolipid biosynthetic process BP 0.0021017496903062 ATSUS6//AT5G14850//WNK4//SETH2//SQD1 GO:0006661 phosphatidylinositol biosynthetic proces... BP 0.00334316238902027 AT5G14850//SETH2//AT1G65510//AtOZF1 GO:0006664 glycolipid metabolic process BP 0.00412948555301464 ATSUS6//AT5G14850//WNK4//SETH2//SQD1 GO:1903509 liposaccharide metabolic process BP 0.00412948555301464 ATSUS6//AT5G14850//WNK4//SETH2//SQD1 GO:0046467 membrane lipid biosynthetic process BP 0.00438927699244595 ATSUS6//AT5G14850//WNK4//SETH2//SQD1 GO:0006270 DNA replication initiation BP 0.00592075670449785 CHR24//BUBR1//ATMCM2//CYCB2;4 GO:0006650 glycerophospholipid metabolic process BP 0.006902615941994 AT5G14850//SETH2//FAB1D//AT1G65510//AtOZF1 GO:0031048 chromatin silencing by small RNA BP 0.006902615941994 AT3G56870//ARF5//PPK1//CYCB2;4//ATMAP70-3 GO:0007049 cell cycle BP 0.00703361201992086 AFH14//AT3G56870//CHR24//AtMAD1//DDB1B//EDA8//BUBR1//SNL1//AHP2//PPK1//ATMCM2//ASU1//CYCB2;4//ATMAP70-3 GO:0009880 embryonic pattern specification BP 0.00769890129074459 DDB1B//ARF5//ASU1 GO:0051276 chromosome organization BP 0.00819006706846052 AT5G12350//AT3G56870//AT5G12910//DDB1B//ARF5//BUBR1//HMG//HTA13//AHP2//PPK1//ATMCM2//ASU1//CYCB2;4//ATMAP70-3 GO:0006643 membrane lipid metabolic process BP 0.0102838340969388 ATSUS6//AT5G14850//WNK4//SETH2//SQD1 GO:0046486 glycerolipid metabolic process BP 0.0107738769553452 AT5G14850//SETH2//FAB1D//AT1G65510//AtOZF1 GO:0006346 methylation-dependent chromatin silencin... BP 0.0118014804238653 AT3G56870//ARF5//PPK1//CYCB2;4//ATMAP70-3 GO:0046474 glycerophospholipid biosynthetic process BP 0.0129111489938046 AT5G14850//SETH2//AT1G65510//AtOZF1 GO:0051567 histone H3-K9 methylation BP 0.0136602264238206 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0061647 histone H3-K9 modification BP 0.0136602264238206 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0006275 regulation of DNA replication BP 0.0146579988225793 AT3G56870//CHR24//BUBR1//ATMCM2//CYCB2;4 GO:0045017 glycerolipid biosynthetic process BP 0.0187195864950055 AT5G14850//SETH2//AT1G65510//AtOZF1 GO:0009790 embryo development BP 0.0207371465143333 emb1441//EMB2744//DDB1B//EDA8//ARF5//LEA14//MGP3//ATMCM2//ASU1 GO:0022402 cell cycle process BP 0.023644182192342 AT3G56870//AtMAD1//DDB1B//EDA8//BUBR1//AHP2//PPK1//ATMCM2//ASU1//ATMAP70-3 GO:0006261 DNA-dependent DNA replication BP 0.0241627230019995 CHR24//BUBR1//AHP2//ATMCM2//CYCB2;4 GO:0007346 regulation of mitotic cell cycle BP 0.0270769584015404 AT3G56870//AtMAD1//BUBR1//SNL1 GO:0034968 histone lysine methylation BP 0.028160619608159 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0043414 macromolecule methylation BP 0.0288162097394978 AT3G56870//ARF5//DML2//PPK1//ATMCM2//ASU1//CYCB2;4//AT1G23280//ATMAP70-3 GO:0018022 peptidyl-lysine methylation BP 0.0289577766340606 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0044087 regulation of cellular component biogene... BP 0.0294639932734371 ATNEK6//AtMYB85//ARF5//ATMAP70-3 GO:0032259 methylation BP 0.0317423684471581 AT3G56870//ARF5//DML2//PPK1//ATMCM2//ASU1//CYCB2;4//AT1G23280//ATMAP70-3 GO:0007015 actin filament organization BP 0.0332721293758647 AFH14//ATNEK6//ARF5//ATMAP70-3 GO:0006644 phospholipid metabolic process BP 0.0336934225369415 AT5G14850//SETH2//FAB1D//AT1G65510//AtOZF1 GO:0044702 single organism reproductive process BP 0.0372465443333993 AFH14//AT3G56870//CHR24//emb1441//EMB2744//DDB1B//EDA8//ARF5//BUBR1//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//AT2G28450//ATMAP70-3//AT2G30540 GO:0006325 chromatin organization BP 0.0388843661791587 AT3G56870//AT5G12910//ARF5//HMG//HTA13//PPK1//ATMCM2//ASU1//CYCB2;4//ATMAP70-3 GO:0048367 shoot system development BP 0.0390770166606229 AT3G56870//CHR24//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//ELO1//ATATG2//SNL1//MGP3//PPK1//ATMCM2//ASU1//AT2G30540 GO:2000026 regulation of multicellular organismal d... BP 0.0415152701137176 AT3G56870//DDB1B//EDA8//ARF5//AT1G22060//ELO1//PPK1//ATMCM2//ASU1//BRIZ1 GO:0006342 chromatin silencing BP 0.0417078821397696 AT3G56870//ARF5//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0048580 regulation of post-embryonic development BP 0.0426935625965689 AT3G56870//DDB1B//EDA8//ARF5//PPK1//ATMCM2//ASU1//BRIZ1 GO:0045814 negative regulation of gene expression, ... BP 0.0427351305997687 AT3G56870//ARF5//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0045786 negative regulation of cell cycle BP 0.0434965390809013 AtMAD1//BUBR1 GO:0018205 peptidyl-lysine modification BP 0.0444119879552208 AT3G56870//ARF5//SNL1//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0030036 actin cytoskeleton organization BP 0.0447753122078439 AFH14//ATNEK6//ARF5//ATMAP70-3 GO:0032501 multicellular organismal process BP 0.0454185537008919 AT5G12350//AFH14//AT3G56870//ATHDH//CHR24//WNK4//emb1441//EMB2744//ANAC087//ATNEK6//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//AT1G22060//ELO1//ATATG2//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//CYCB2;4//AT1G61500//AT2G28450//ATMAP70-3//CXIP4//AT2G30540//BRIZ1 GO:0010638 positive regulation of organelle organiz... BP 0.0463515770914988 AT5G12350//ATNEK6//ARF5//ATMAP70-3 GO:0034470 ncRNA processing BP 0.0463515770914988 DIM1B//AtTRM//AtCHUP1//ASU1 GO:0051239 regulation of multicellular organismal p... BP 0.0471403865013216 AT3G56870//DDB1B//EDA8//ARF5//AT1G22060//ELO1//PPK1//ATMCM2//ASU1//BRIZ1 GO:0051130 positive regulation of cellular componen... BP 0.0479585583318539 AT5G12350//ATNEK6//ARF5//ATMAP70-3 GO:0050793 regulation of developmental process BP 0.0492713716986424 AT3G56870//AtPERK8//DDB1B//EDA8//ARF5//AT1G22060//ELO1//PPK1//ATMCM2//ASU1//BRIZ1 GO:0010564 regulation of cell cycle process BP 0.0495962165944004 AT3G56870//DDB1B//EDA8//BUBR1 GO:0006333 chromatin assembly or disassembly BP 0.0508878058959283 AT5G12910//HMG//HTA13 GO:0019374 galactolipid metabolic process BP 0.0508878058959283 ATSUS6//WNK4//SQD1 GO:0019375 galactolipid biosynthetic process BP 0.0508878058959283 ATSUS6//WNK4//SQD1 GO:0008283 cell proliferation BP 0.0515283912537054 CHR24//BUBR1//ELO1//HTA13//ATMCM2//CYCB2;4 GO:0007275 multicellular organismal development BP 0.0517652380660459 AT5G12350//AFH14//AT3G56870//ATHDH//CHR24//WNK4//emb1441//EMB2744//ANAC087//ATNEK6//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//AT1G22060//ELO1//ATATG2//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//CYCB2;4//AT2G28450//ATMAP70-3//CXIP4//AT2G30540//BRIZ1 GO:0071103 DNA conformation change BP 0.053191717763153 AT5G12910//HTA13//ATMCM2 GO:0051052 regulation of DNA metabolic process BP 0.0532543239413684 AT3G56870//CHR24//BUBR1//ATMCM2//CYCB2;4 GO:0048856 anatomical structure development BP 0.0550043514541907 AT5G12350//AFH14//AT3G56870//ATHDH//CHR24//WNK4//emb1441//EMB2744//AtPERK8//ATNEK6//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//AT1G22060//ELO1//ATATG2//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//CYCB2;4//AT2G28450//ATMAP70-3//CXIP4//AT2G30540 GO:0040029 regulation of gene expression, epigeneti... BP 0.0570676342128817 AT3G56870//ARF5//DML2//PPK1//ATMCM2//ASU1//CYCB2;4//ATMAP70-3 GO:0006305 DNA alkylation BP 0.0575281812903893 DML2//PPK1//ATMCM2//ASU1//CYCB2;4 GO:0006306 DNA methylation BP 0.0575281812903893 DML2//PPK1//ATMCM2//ASU1//CYCB2;4 GO:0044707 single-multicellular organism process BP 0.0579598426451834 AT5G12350//AFH14//AT3G56870//ATHDH//CHR24//WNK4//emb1441//EMB2744//ANAC087//ATNEK6//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//AT1G22060//ELO1//ATATG2//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//CYCB2;4//AT2G28450//ATMAP70-3//CXIP4//AT2G30540//BRIZ1 GO:0008654 phospholipid biosynthetic process BP 0.0582425672019526 AT5G14850//SETH2//AT1G65510//AtOZF1 GO:0051128 regulation of cellular component organiz... BP 0.0588024024296278 AT5G12350//AtPERK8//ATNEK6//ARF5//BUBR1//ATMAP70-3 GO:0006813 potassium ion transport BP 0.0588513306202612 KAT1//AT3G09030 GO:0044728 DNA methylation or demethylation BP 0.060484335967677 DML2//PPK1//ATMCM2//ASU1//CYCB2;4 GO:0022414 reproductive process BP 0.0616748950029159 AFH14//AT3G56870//CHR24//emb1441//EMB2744//DDB1B//EDA8//ARF5//BUBR1//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//AT1G61500//AT2G28450//ATMAP70-3//CXIP4//AT2G30540 GO:0006304 DNA modification BP 0.0619944549024773 DML2//PPK1//ATMCM2//ASU1//CYCB2;4 GO:0044767 single-organism developmental process BP 0.0622947845017028 AT5G12350//AFH14//AT3G56870//ATHDH//CHR24//WNK4//emb1441//EMB2744//AtPERK8//ANAC087//ATNEK6//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//AT1G22060//ELO1//ATATG2//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//CYCB2;4//AT2G28450//ATMAP70-3//CXIP4//AT2G30540//BRIZ1 GO:0006259 DNA metabolic process BP 0.0622952501329105 AT3G56870//CHR24//DDB1B//BUBR1//DML2//AHP2//PPK1//ATMCM2//ASU1//CYCB2;4//ATMAP70-3 GO:0006869 lipid transport BP 0.0628985941225607 AT5G07630//AT4G22470//CXIP4 GO:0016571 histone methylation BP 0.0653128345874019 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0033043 regulation of organelle organization BP 0.06665271522047 AT5G12350//ATNEK6//ARF5//BUBR1//ATMAP70-3 GO:0006260 DNA replication BP 0.0666639936756281 AT3G56870//CHR24//BUBR1//AHP2//ATMCM2//CYCB2;4 GO:1903047 mitotic cell cycle process BP 0.0666639936756281 AT3G56870//AtMAD1//BUBR1//PPK1//ATMCM2//ASU1 GO:0006479 protein methylation BP 0.0694153855312754 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0008213 protein alkylation BP 0.0694153855312754 AT3G56870//ARF5//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0009908 flower development BP 0.0700357108798505 AT3G56870//CHR24//EDA8//ARF5//BUBR1//SNL1//MGP3//PPK1//ATMCM2//ASU1//AT2G30540 GO:0030838 positive regulation of actin filament po... BP 0.0706796138442577 ATNEK6//ARF5//ATMAP70-3 GO:0045010 actin nucleation BP 0.0706796138442577 ATNEK6//ARF5//ATMAP70-3 GO:0006334 nucleosome assembly BP 0.071404940659187 AT5G12910//HTA13 GO:0034728 nucleosome organization BP 0.071404940659187 AT5G12910//HTA13 GO:0009793 embryo development ending in seed dorman... BP 0.0717259537064634 emb1441//EMB2744//DDB1B//EDA8//ARF5//LEA14//MGP3 GO:0018193 peptidyl-amino acid modification BP 0.0717259537064634 AT3G56870//ARF5//SNL1//PPK1//ATMCM2//CYCB2;4//ATMAP70-3 GO:0045892 negative regulation of transcription, DN... BP 0.0717259537064634 AT3G56870//ARF5//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0717259537064634 AT3G56870//ARF5//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0717259537064634 AT3G56870//ARF5//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0717259537064634 AT3G56870//ARF5//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0031324 negative regulation of cellular metaboli... BP 0.0730656299123913 AT3G56870//ARF5//BUBR1//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0048316 seed development BP 0.0730656299123913 emb1441//EMB2744//DDB1B//EDA8//ARF5//LEA14//MGP3//ASU1 GO:0031334 positive regulation of protein complex a... BP 0.0733656468574897 ATNEK6//ARF5//ATMAP70-3 GO:0032273 positive regulation of protein polymeriz... BP 0.0733656468574897 ATNEK6//ARF5//ATMAP70-3 GO:0051495 positive regulation of cytoskeleton orga... BP 0.0733656468574897 ATNEK6//ARF5//ATMAP70-3 GO:0003006 developmental process involved in reprod... BP 0.0734024512195166 AFH14//AT3G56870//CHR24//emb1441//EMB2744//DDB1B//EDA8//ARF5//BUBR1//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//AT2G28450//ATMAP70-3//CXIP4//AT2G30540 GO:0032502 developmental process BP 0.0750137589633503 AT5G12350//AFH14//AT3G56870//ATHDH//CHR24//WNK4//emb1441//EMB2744//AtPERK8//ANAC087//ATNEK6//ATCLC-E//DDB1B//EDA8//ARF5//BUBR1//AT1G22060//ELO1//ATATG2//ATROPGEF8//SNL1//LEA14//MGP3//PPK1//ATMCM2//ASU1//CYCB2;4//AT2G28450//ATMAP70-3//CXIP4//AT2G30540//BRIZ1 GO:1902589 single-organism organelle organization BP 0.0756544485828045 AFH14//AT3G56870//ATNEK6//DDB1B//ARF5//BUBR1//AtCHUP1//AHP2//PPK1//ATMCM2//ASU1//CYCB2;4//ATMAP70-3//CXIP4 GO:0090567 reproductive shoot system development BP 0.076470369540417 AT3G56870//CHR24//EDA8//ARF5//BUBR1//SNL1//MGP3//PPK1//ATMCM2//ASU1//AT2G30540 GO:0006996 organelle organization BP 0.0772756543290825 AT5G12350//AFH14//AT3G56870//AT5G12910//AT5G07630//ATNEK6//DDB1B//ARF5//BUBR1//HMG//HTA13//AtCHUP1//AHP2//PPK1//ATMCM2//ASU1//CYCB2;4//AT2G28450//ATMAP70-3//CXIP4 GO:0045934 negative regulation of nucleobase-contai... BP 0.0781753381362946 AT3G56870//ARF5//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0051172 negative regulation of nitrogen compound... BP 0.0781753381362946 AT3G56870//ARF5//SNL1//PPK1//ASU1//CYCB2;4//ATMAP70-3 GO:0008064 regulation of actin polymerization or de... BP 0.0788726110562591 ATNEK6//ARF5//ATMAP70-3