4.0:Analysis result:Information of module
phyB mutant 16C 10hrs

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0009311
oligosaccharide metabolic process
BP7.695e-03CGL ATLEUC1 ATPC1 GDPDL2 WAK2 AT1G66430 AT2G01870 IMPL1
GO:0009846
pollen germination
BP1.084e-02AACT2 ATATG6 MGP2
GO:0006551
leucine metabolic process
BP2.369e-02ETFBETA ETFQO
GO:0016054
organic acid catabolic process
BP2.404e-02ETFBETA ARS5 AT5G06370 AMT1 AIM1 ATPC1 HEME1 ETFQO GASA1 ATMPK1
GO:0046395
carboxylic acid catabolic process
BP2.404e-02ETFBETA ARS5 AT5G06370 AMT1 AIM1 ATPC1 HEME1 ETFQO GASA1 ATMPK1
GO:0046685
response to arsenic-containing substance
BP2.444e-02ARS5 SIP1;2 AtDJ1B
GO:0043623
cellular protein complex assembly
BP2.487e-02GPP2 AT5G57200 AT5G47570 ARS5 PAM68 AT4G08280 ATPC1 ABCI15 AT3G08610 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:0000226
microtubule cytoskeleton organization
BP2.853e-02GPP2 AtENODL15 AT4G26660 APC6 MGP2 AT1G55460
GO:0070925
organelle assembly
BP2.880e-02ATATG6 AtENODL15 APC6
GO:0007017
microtubule-based process
BP2.928e-02GPP2 AtENODL15 AT4G26660 AT3G16120 APC6 MGP2 AT1G55460
GO:1901606
alpha-amino acid catabolic process
BP2.961e-02ETFBETA AMT1 ATPC1 HEME1 ETFQO GASA1
GO:0044282
small molecule catabolic process
BP3.018e-02ETFBETA ARS5 AT5G06370 AMT1 AIM1 AtPPT1 ATPC1 HEME1 ETFQO GASA1 IMPL1 ATMPK1
GO:0009063
cellular amino acid catabolic process
BP3.072e-02ETFBETA AMT1 ATPC1 HEME1 ETFQO GASA1
GO:0022607
cellular component assembly
BP3.228e-02GPP2 AT5G57200 AT5G47570 ARS5 ATATG6 AtENODL15 PAM68 AT4G08670 AT4G08280 ATPC1 ABCI15 AT3G08610 WAK2 AT2G25270 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:0065003
macromolecular complex assembly
BP3.317e-02GPP2 AT5G57200 AT5G47570 ARS5 AtENODL15 PAM68 AT4G08280 ATPC1 ABCI15 AT3G08610 AT2G25270 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:0035303
regulation of dephosphorylation
BP3.323e-02PYR1 ATPC1 AIF1 AT2G36470 ATMPK1
GO:0043543
protein acylation
BP3.453e-02AT5G57200 AtPNG1 GAS41 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0000023
maltose metabolic process
BP3.465e-02ATLEUC1 ATPC1 GDPDL2 AT2G01870 IMPL1
GO:0016556
mRNA modification
BP3.696e-02MEF18 AT4G24810 PAM68 GDPDL2
GO:0005984
disaccharide metabolic process
BP3.922e-02ATLEUC1 ATPC1 GDPDL2 AT1G66430 AT2G01870 IMPL1
GO:0006338
chromatin remodeling
BP4.085e-02BSH AT2G25270
GO:0080129
proteasome core complex assembly
BP4.230e-02AT5G47570 ARS5 AT3G08610 PAG1 AT2G02510
GO:0019243
methylglyoxal catabolic process to D-lac...
BP4.282e-02ETFBETA AtPPT1 ETFQO IMPL1
GO:0043648
dicarboxylic acid metabolic process
BP4.419e-02DCT LOG8 MDH
GO:0006778
porphyrin-containing compound metabolic ...
BP4.470e-02ETFBETA IPP1 ATPC1 HEME1 AT1G56050 ATSIRB
GO:0009438
methylglyoxal metabolic process
BP4.489e-02ETFBETA AtPPT1 ETFQO IMPL1
GO:0042182
ketone catabolic process
BP4.489e-02ETFBETA AtPPT1 ETFQO IMPL1
GO:0051596
methylglyoxal catabolic process
BP4.489e-02ETFBETA AtPPT1 ETFQO IMPL1
GO:0006486
protein glycosylation
BP4.613e-02CGL CBNAC ATPAB2 SETH5 AtDJ1B AT-P4H-1
GO:0009101
glycoprotein biosynthetic process
BP4.613e-02CGL CBNAC ATPAB2 SETH5 AtDJ1B AT-P4H-1
GO:0033013
tetrapyrrole metabolic process
BP4.613e-02ETFBETA IPP1 ATPC1 HEME1 AT1G56050 ATSIRB
GO:0043413
macromolecule glycosylation
BP4.613e-02CGL CBNAC ATPAB2 SETH5 AtDJ1B AT-P4H-1
GO:0009100
glycoprotein metabolic process
BP4.760e-02CGL CBNAC ATPAB2 SETH5 AtDJ1B AT-P4H-1
GO:0006089
lactate metabolic process
BP4.919e-02ETFBETA AtPPT1 ETFQO IMPL1
GO:0046185
aldehyde catabolic process
BP4.919e-02ETFBETA AtPPT1 ETFQO IMPL1
GO:0006461
protein complex assembly
BP5.020e-02GPP2 AT5G57200 AT5G47570 ARS5 AtENODL15 PAM68 AT4G08280 ATPC1 ABCI15 AT3G08610 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:1901605
alpha-amino acid metabolic process
BP5.033e-02DCT ETFBETA AGP25 LOG8 AMT1 CGL AT-HF ATPC1 HEME1 AT1G66430 ETFQO GASA1 AT-P4H-1
GO:0070271
protein complex biogenesis
BP5.176e-02GPP2 AT5G57200 AT5G47570 ARS5 AtENODL15 PAM68 AT4G08280 ATPC1 ABCI15 AT3G08610 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:0006498
N-terminal protein lipidation
BP5.188e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0006499
N-terminal protein myristoylation
BP5.188e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0018377
protein myristoylation
BP5.188e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0070085
glycosylation
BP5.218e-02CGL CBNAC ATPAB2 SETH5 AtDJ1B AT-P4H-1
GO:0031348
negative regulation of defense response
BP5.380e-02AMT1 AT1G66090 ATPLT5 AIF1 AT1G34420 AT2G36470 AT2G21120 ATMPK1
GO:0031365
N-terminal protein amino acid modificati...
BP5.507e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0006497
protein lipidation
BP5.839e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0042158
lipoprotein biosynthetic process
BP5.839e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0006779
porphyrin-containing compound biosynthet...
BP5.846e-02IPP1 ATPC1 HEME1 AT1G56050 ATSIRB
GO:0034622
cellular macromolecular complex assembly
BP5.896e-02GPP2 AT5G57200 AT5G47570 ARS5 PAM68 AT4G08280 ATPC1 ABCI15 AT3G08610 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:0042157
lipoprotein metabolic process
BP5.953e-02AT5G57200 AtPNG1 AT5G36210 AT4G22940 AT3G19100 AT1G69250 AT1G34420 ARF3 AT1G03740 AT2G25355
GO:0033014
tetrapyrrole biosynthetic process
BP6.453e-02IPP1 ATPC1 HEME1 AT1G56050 ATSIRB
GO:0035670
plant-type ovary development
BP6.594e-02ATERS MAR1 WAK2 ATMPK1
GO:0048481
ovule development
BP6.594e-02ATERS MAR1 WAK2 ATMPK1
GO:0006071
glycerol metabolic process
BP6.694e-02GDPDL2 AT1G48430
GO:0019400
alditol metabolic process
BP6.694e-02GDPDL2 AT1G48430
GO:0006520
cellular amino acid metabolic process
BP6.820e-02DCT ATERS ETFBETA AGP25 LOG8 AMT1 CGL AT-HF ATLEUC1 ATPC1 HEME1 AT1G66430 ETFQO GASA1 AT-P4H-1
GO:0016071
mRNA metabolic process
BP7.589e-02HEN4 MEF18 CBNAC ATPAB2 AT4G24810 PAM68 GDPDL2
GO:0006810
transport
BP7.759e-02AT5G20050 AT5G25430 DCT ATNRT2.4 AT5G57200 AT5G47730 ABCB7 AT5G46630 AT5G18880 SIP1;2 AMT1 AT5G04420 AT5G03380 ATATG6 ATRAB-A2C emb2474 MAR1 AT4G40080 AT4G26550 AT4G08670 AT4G08850 ATPC1 ATSTE24 SETH5 AT4G00350 SIRANBP AT1G66090 ABCI15 ATPLT5 CYP72A14 AIF1 PRA1.F2 AT1G69250 AT1G51610 AT1G51540 ATINT1 AT1G49260 UCP3 AT2G28660 ARF3 AT2G36470 ATMPK1 AT1G51160 AT2G25355 ATUPS2 AT2G24240 PAG1 ATOEP37
GO:0006783
heme biosynthetic process
BP7.857e-02AT1G56050 ATSIRB
GO:0000302
response to reactive oxygen species
BP7.940e-02AtPNG1 CSD3 AT1G66080 AT1G54850 ATPDI10 ATMPK1 ATHSFA2
GO:0010207
photosystem II assembly
BP8.002e-02PAM68 AT4G08280 ATPC1 ABCI15 AtTic20-II
GO:0046700
heterocycle catabolic process
BP8.303e-02ETFBETA AMT1 CBNAC ATPAB2 HEME1 GASA1
GO:0009081
branched-chain amino acid metabolic proc...
BP8.460e-02ETFBETA ETFQO
GO:0051188
cofactor biosynthetic process
BP8.485e-02AACT2 IPP1 AtPPT1 ATPC1 HEME1 AT1G56050 ATSIRB
GO:0044270
cellular nitrogen compound catabolic pro...
BP8.510e-02ETFBETA AMT1 CBNAC ATPAB2 HEME1 GASA1
GO:0031347
regulation of defense response
BP8.533e-02AMT1 CBNAC AT4G08850 AT1G66090 ATPLT5 AIF1 AT1G34420 AT1G34750 AT2G28660 AT2G36470 AT2G21120 ATMPK1
GO:0019252
starch biosynthetic process
BP8.722e-02ATLEUC1 ATPC1 GDPDL2 AT2G01870 IMPL1
GO:0071822
protein complex subunit organization
BP8.783e-02GPP2 AT5G57200 AT5G47570 ARS5 AtENODL15 PAM68 AT4G08280 ATPC1 ABCI15 AT3G08610 APC6 MGP2 PAG1 AtTic20-II AT2G02510
GO:0035304
regulation of protein dephosphorylation
BP8.824e-02ATPC1 AIF1 AT2G36470 ATMPK1
GO:0019439
aromatic compound catabolic process
BP8.934e-02ETFBETA AMT1 CBNAC ATPAB2 HEME1 GASA1
GO:0006790
sulfur compound metabolic process
BP9.051e-02AACT2 AGP25 AMT1 AtCAM7 CGL AtENODL15 ATLEUC1 ATPC1 WAK2 AT1G66430 ETFQO IMPL1
GO:0010193
response to ozone
BP9.077e-02AtPNG1 CSD3
GO:0018208
peptidyl-proline modification
BP9.077e-02AT4G19830 AT-P4H-1
GO:0071229
cellular response to acid chemical
BP9.251e-02ATNRT2.4 AT5G47730 CSD3 AMT1 PYR1 ATMSRB3 AT1G66090 AIF1 AT1G34420 CuAO1 AT2G36470 AT2G21120 ATMPK1
GO:0006869
lipid transport
BP9.433e-02AT5G04420 AT4G08670 ABCI15 AT1G51540
GO:1901137
carbohydrate derivative biosynthetic pro...
BP9.506e-02AMT1 CGL CBNAC ATPAB2 AT-HF ATLEUC1 ATPC1 ATMSRB3 SETH5 pde194 WAK2 AtDJ1B AT-P4H-1
GO:0006979
response to oxidative stress
BP9.572e-02AtPNG1 CSD3 APX6 ATMSRB3 AT1G66080 AT1G54850 ATPDI10 ATSIRB ATMPK1 ATHSFA2
GO:0000303
response to superoxide
BP9.707e-02CSD3 ATMPK1
GO:0000305
response to oxygen radical
BP9.707e-02CSD3 ATMPK1
GO:0009742
brassinosteroid mediated signaling pathw...
BP9.707e-02AIF1 14-3-3OMEGA
GO:0043401
steroid hormone mediated signaling pathw...
BP9.707e-02AIF1 14-3-3OMEGA
GO:0048545
response to steroid hormone
BP9.707e-02AIF1 14-3-3OMEGA
GO:0051225
spindle assembly
BP9.707e-02AtENODL15 APC6
GO:0071367
cellular response to brassinosteroid sti...
BP9.707e-02AIF1 14-3-3OMEGA
GO:0071383
cellular response to steroid hormone sti...
BP9.707e-02AIF1 14-3-3OMEGA
GO:0080134
regulation of response to stress
BP1.000e-01AMT1 CBNAC AT4G08850 AT1G66090 ATPLT5 AIF1 AT1G34420 AT1G34750 AT2G28660 AT2G36470 AT2G21120 ATMPK1
GO:0006487
protein N-linked glycosylation
BP1.006e-01CGL CBNAC AT-P4H-1
GO:1901361
organic cyclic compound catabolic proces...
BP1.027e-01ETFBETA AMT1 CBNAC ATPAB2 HEME1 GASA1
GO:0007051
spindle organization
BP1.035e-01AtENODL15 APC6
GO:0034599
cellular response to oxidative stress
BP1.035e-01CSD3 ATMSRB3
GO:0042168
heme metabolic process
BP1.035e-01AT1G56050 ATSIRB
GO:0051234
establishment of localization
BP1.046e-01AT5G20050 AT5G25430 DCT ATNRT2.4 AT5G57200 AT5G47730 ABCB7 AT5G46630 AT5G18880 SIP1;2 AMT1 AT5G04420 AT5G03380 ATATG6 ATRAB-A2C emb2474 MAR1 AT4G40080 AT4G26550 AT4G08670 AT4G08850 ATPC1 ATSTE24 SETH5 AT4G00350 SIRANBP AT1G66090 ABCI15 ATPLT5 CYP72A14 AIF1 PRA1.F2 AT1G69250 AT1G51610 AT1G51540 ATINT1 AT1G49260 UCP3 AT2G28660 ARF3 AT2G36470 ATMPK1 AT1G51160 AT2G25355 ATUPS2 AT2G24240 PAG1 ATOEP37
GO:0006569
tryptophan catabolic process
BP1.048e-01AMT1 HEME1 GASA1
GO:0046218
indolalkylamine catabolic process
BP1.048e-01AMT1 HEME1 GASA1
GO:0009642
response to light intensity
BP1.050e-01CSD3 AT1G66080 AT1G54850 ETFQO ATPDI10 ATHSFA2
GO:0016311
dephosphorylation
BP1.050e-01PYR1 ATPC1 AIF1 AT2G36470 ATMPK1 PP1-AT
GO:0009853
photorespiration
BP1.053e-01AT5G47570 emb2474 AT3G08610 PAG1 AT2G02510
GO:0009887
organ morphogenesis
BP1.100e-01BBM HEN4 AMT1 AT4G26660 ATPC1 AIF1 APC6 AT2G29180
GO:0009644
response to high light intensity
BP1.107e-01CSD3 AT1G66080 AT1G54850 ATPDI10 ATHSFA2
GO:0044085
cellular component biogenesis
BP1.123e-01GPP2 AT5G57200 AT5G47570 ARS5 AGP25 ATATG6 AtENODL15 ATUGE2 PAM68 AT4G08670 AT4G08280 ATPC1 ABCI15 AT3G08610 WAK2 AT1G73940 AT2G25270 APC6 MGP2 AT1G24240 AT1G51160 PAG1 AtTic20-II AT2G02510
GO:0009074
aromatic amino acid family catabolic pro...
BP1.134e-01AMT1 HEME1 GASA1