GOID	TERM	ONTOLOGY	pValue	Genes
GO:0072528	pyrimidine-containing compound biosynthe...	BP	0.000279005605241873	AT3G57940//DHOASE//AT3G15140//AT1G17410//AT2G21550
GO:0072527	pyrimidine-containing compound metabolic...	BP	0.00060122746203729	AT3G57940//DHOASE//AT3G15140//AT1G17410//AT2G21550
GO:0006221	pyrimidine nucleotide biosynthetic proce...	BP	0.0017713388066966	AT3G57940//AT3G15140//AT1G17410//AT2G21550
GO:0006220	pyrimidine nucleotide metabolic process	BP	0.00219919361731276	AT3G57940//AT3G15140//AT1G17410//AT2G21550
GO:0009220	pyrimidine ribonucleotide biosynthetic p...	BP	0.0106723914020564	AT3G57940//AT3G15140//AT1G17410
GO:0009218	pyrimidine ribonucleotide metabolic proc...	BP	0.0143023145287085	AT3G57940//AT3G15140//AT1G17410
GO:0000956	nuclear-transcribed mRNA catabolic proce...	BP	0.0151021640428795	AT3G13340//AIN1//AT1G03910
GO:0006402	mRNA catabolic process	BP	0.0151021640428795	AT3G13340//AIN1//AT1G03910
GO:0009165	nucleotide biosynthetic process	BP	0.017601675418383	AtNMNAT//AT3G57940//AT3G15140//AT1G17410//AT2G21550
GO:1901293	nucleoside phosphate biosynthetic proces...	BP	0.017601675418383	AtNMNAT//AT3G57940//AT3G15140//AT1G17410//AT2G21550
GO:0006401	RNA catabolic process	BP	0.0176511475851714	AT3G13340//AIN1//AT1G03910
GO:0051604	protein maturation	BP	0.0275895457486978	AT3G46210//AT1G03910
GO:0034655	nucleobase-containing compound catabolic...	BP	0.0301071264419605	AT3G13340//AIN1//AT1G03910
GO:0009259	ribonucleotide metabolic process	BP	0.0301592897970479	AT3G57940//AT3G15140//PPR40//AT1G17410
GO:0009110	vitamin biosynthetic process	BP	0.0386871832507552	TAT7//ATFMN/FHY
GO:0006487	protein N-linked glycosylation	BP	0.0460271223132808	CKL2//AIN1
GO:0009685	gibberellin metabolic process	BP	0.0460271223132808	AGL15//ATGA20OX3
GO:0016042	lipid catabolic process	BP	0.0466238167003048	AT5G49900//AGL15//ATGA20OX3//AT3G14075
GO:0016101	diterpenoid metabolic process	BP	0.048578975765458	AGL15//ATGA20OX3
GO:0016071	mRNA metabolic process	BP	0.0537101814131416	AT3G46210//AT3G13340//CDC48C//AIN1//AT1G03910
GO:1901137	carbohydrate derivative biosynthetic pro...	BP	0.0586909710962547	AT3G57940//ATFMN/FHY//AT3G15140//CKL2//AT1G17410//AIN1//AT2G21550
GO:0009260	ribonucleotide biosynthetic process	BP	0.0621388556780408	AT3G57940//AT3G15140//AT1G17410
GO:0046390	ribose phosphate biosynthetic process	BP	0.0656096353321182	AT3G57940//AT3G15140//AT1G17410
GO:0000398	mRNA splicing, via spliceosome	BP	0.0766599653765056	AT3G46210//CDC48C
GO:0009793	embryo development ending in seed dorman...	BP	0.0778537249583771	AGL15//emb2735//CDC48C//CKRC1//AT1G03910//ARPN
GO:1901566	organonitrogen compound biosynthetic pro...	BP	0.0802339337736746	AtNMNAT//PORA//AT3G57940//DHOASE//ATFMN/FHY//AT4G10050//AT3G15140//CKRC1//AT1G17410//AT2G21550
GO:0007264	small GTPase mediated signal transductio...	BP	0.0827725102997708	ATRAB2B//ATFP8
GO:0009144	purine nucleoside triphosphate metabolic...	BP	0.0858834299876401	PPR40//AT1G17410
GO:0009199	ribonucleoside triphosphate metabolic pr...	BP	0.0858834299876401	PPR40//AT1G17410
GO:0009205	purine ribonucleoside triphosphate metab...	BP	0.0858834299876401	PPR40//AT1G17410
GO:0000375	RNA splicing, via transesterification re...	BP	0.0922092255413424	AT3G46210//CDC48C
GO:0000377	RNA splicing, via transesterification re...	BP	0.0922092255413424	AT3G46210//CDC48C
GO:0009141	nucleoside triphosphate metabolic proces...	BP	0.0922092255413424	PPR40//AT1G17410
GO:0055086	nucleobase-containing small molecule met...	BP	0.0930153039773568	AtNMNAT//AT3G57940//DHOASE//AT3G15140//PPR40//AT1G17410//AT2G21550
GO:0043414	macromolecule methylation	BP	0.0985072496069842	ACBP5//AT3G46210//CDC48C//AIN1//RPL16A
GO:0009112	nucleobase metabolic process	BP	0.0994597998057682	267_
GO:0010025	wax biosynthetic process	BP	0.0994597998057682	380_
GO:0046131	pyrimidine ribonucleoside metabolic proc...	BP	0.0994597998057682	030_
GO:0055114	oxidation-reduction process	BP	0.0998880636573475	CYP96A15//PORA//ATGA20OX3//AT3G49630//AT1G66540//PPR40//AT3G27510//AT-SO//ALPHA//AT1G29180//AT2G21550//AT1G60750
GO:0009790	embryo development	BP	0.103227263834565	AGL15//emb2735//CDC48C//CKRC1//AT1G03910//ARPN
GO:0032259	methylation	BP	0.103928909757514	ACBP5//AT3G46210//CDC48C//AIN1//RPL16A
GO:0043687	post-translational protein modification	BP	0.105247864715535	CDC48C//AIN1
GO:1901564	organonitrogen compound metabolic proces...	BP	0.105323896046359	AtNMNAT//PORA//AT5G49900//AT3G57940//DHOASE//ATFMN/FHY//AT4G10050//AT3G15140//PPR40//AT-SO//CKRC1//AT1G17410//AT1G50110//AT2G21550
GO:0009123	nucleoside monophosphate metabolic proce...	BP	0.108582365589543	PPR40//AT2G21550
GO:0006672	ceramide metabolic process	BP	0.108849831971419	581_
GO:0010166	wax metabolic process	BP	0.108849831971419	380_
GO:0006766	vitamin metabolic process	BP	0.115334487931928	TAT7//ATFMN/FHY
GO:0006119	oxidative phosphorylation	BP	0.118142884961991	928_
GO:0006213	pyrimidine nucleoside metabolic process	BP	0.118142884961991	030_
GO:0042773	ATP synthesis coupled electron transport	BP	0.118142884961991	928_
GO:0072525	pyridine-containing compound biosyntheti...	BP	0.118142884961991	053_
GO:0080050	regulation of seed development	BP	0.118142884961991	258_
GO:0048831	regulation of shoot system development	BP	0.121838023434521	AHP3//ATSWC6//AGL15//ARPN
GO:0009630	gravitropism	BP	0.122191311224165	CKRC1//AIN1
GO:0009723	response to ethylene	BP	0.127283759517594	PORA//CKRC1//AIN1
GO:0006730	one-carbon metabolic process	BP	0.127339950742572	546_
GO:0009081	branched-chain amino acid metabolic proc...	BP	0.127339950742572	636_
GO:0006397	mRNA processing	BP	0.132657327779164	AT3G46210//CDC48C
GO:0006664	glycolipid metabolic process	BP	0.132657327779164	AT5G49900//ATFMN/FHY
GO:0045595	regulation of cell differentiation	BP	0.132657327779164	CKRC1//AIN1
GO:0006284	base-excision repair	BP	0.136442011230263	672_
GO:0006338	chromatin remodeling	BP	0.136442011230263	650_
GO:0009900	dehiscence	BP	0.136442011230263	258_
GO:0009958	positive gravitropism	BP	0.136442011230263	364_
GO:0048598	embryonic morphogenesis	BP	0.136442011230263	364_
GO:0044242	cellular lipid catabolic process	BP	0.139080630900286	AT5G49900//AGL15//ATGA20OX3
GO:0009629	response to gravity	BP	0.139745238558981	CKRC1//AIN1
GO:0042278	purine nucleoside metabolic process	BP	0.139745238558981	PPR40//AT1G17410
GO:0046128	purine ribonucleoside metabolic process	BP	0.139745238558981	PPR40//AT1G17410
GO:0016036	cellular response to phosphate starvatio...	BP	0.14331989303482	ATFMN/FHY//BAH1
GO:1903509	liposaccharide metabolic process	BP	0.14331989303482	AT5G49900//ATFMN/FHY
GO:0006817	phosphate ion transport	BP	0.145450038394963	114_
GO:0022904	respiratory electron transport chain	BP	0.145450038394963	928_
GO:0045892	negative regulation of transcription, DN...	BP	0.149690043155551	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:1902679	negative regulation of RNA biosynthetic ...	BP	0.149690043155551	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:1903507	negative regulation of nucleic acid-temp...	BP	0.149690043155551	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:0009150	purine ribonucleotide metabolic process	BP	0.150526626107638	PPR40//AT1G17410
GO:0035196	production of miRNAs involved in gene si...	BP	0.150526626107638	CDC48C//AIN1
GO:0090305	nucleic acid phosphodiester bond hydroly...	BP	0.150526626107638	AT1G69630//AIN1
GO:0051321	meiotic cell cycle	BP	0.151234764766543	AGL15//AT1G69630//AIN1
GO:0051253	negative regulation of RNA metabolic pro...	BP	0.15162917957563	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:0010629	negative regulation of gene expression	BP	0.152342167271329	ACBP5//AGL15//ATFMN/FHY//CDC48C//AIN1
GO:0000160	phosphorelay signal transduction system	BP	0.154157157176806	AHP3//AIN1
GO:0009606	tropism	BP	0.154157157176806	CKRC1//AIN1
GO:0001676	long-chain fatty acid metabolic process	BP	0.154364994359144	060_
GO:0035556	intracellular signal transduction	BP	0.157307108820555	ATRAB2B//AHP3//ATFP8//AT3G03430//AIN1
GO:0030422	production of siRNA involved in RNA inte...	BP	0.157804789164333	CDC48C//AIN1
GO:0035195	gene silencing by miRNA	BP	0.157804789164333	CDC48C//AIN1
GO:0009117	nucleotide metabolic process	BP	0.1607423674583	AtNMNAT//AT3G57940//AT3G15140//PPR40//AT1G17410//AT2G21550
GO:0001510	RNA methylation	BP	0.161468782382199	AT3G46210//RPL16A
GO:0006753	nucleoside phosphate metabolic process	BP	0.162222916751571	AtNMNAT//AT3G57940//AT3G15140//PPR40//AT1G17410//AT2G21550
GO:0045934	negative regulation of nucleobase-contai...	BP	0.163464276971953	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:0008380	RNA splicing	BP	0.163716932418585	AT3G46210//AT4G10050//CDC48C
GO:0009892	negative regulation of metabolic process	BP	0.165201948944145	ACBP5//AGL15//ATFMN/FHY//CDC48C//AT1G32950//AIN1
GO:0010558	negative regulation of macromolecule bio...	BP	0.165469183712986	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:2000113	negative regulation of cellular macromol...	BP	0.165469183712986	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:0051172	negative regulation of nitrogen compound...	BP	0.167483059643843	ACBP5//AGL15//ATFMN/FHY//AIN1
GO:0009119	ribonucleoside metabolic process	BP	0.168842959954507	PPR40//AT1G17410
GO:0070646	protein modification by small protein re...	BP	0.168842959954507	CDC48C//AT1G43690
GO:0010565	regulation of cellular ketone metabolic ...	BP	0.171919492530496	114_