GOID	TERM	ONTOLOGY	pValue	Genes
GO:0090304	nucleic acid metabolic process	BP	1.09371932050068e-07	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//AT3G59040//GUN4//BPG2//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G18820//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0016070	RNA metabolic process	BP	2.75857543853927e-07	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G56850//AT5G49470//ATCUL4//AT5G44080//NF-YC12//AHK2//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//AT3G59040//GUN4//BPG2//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G10930//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//ATMAP70-3//ANAC034//AtPUB12//AT2G16940//AT2G38300//ATGPA1
GO:0006139	nucleobase-containing compound metabolic...	BP	1.77324633562376e-05	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//ATHMA1//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//ATCCD1//AT3G59040//GUN4//BPG2//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G18820//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G55090//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//AT2G32170//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0016071	mRNA metabolic process	BP	2.14846545094136e-05	ATU2AF65A//AT1G31920//HEN4//AT5G62840//AT5G56850//RARE1//BPG2//AT3G48200//SLOMO//EMB1989//AT4G10930//EMB2369//AT2G33440//GDPDL2//AT3G25840//CRM3//CDC48C//CPSF73-I//AT1G18485//CBRLK1//STIPL1//AtMTR4//RNE//AT1G03910//AT2G16940
GO:0009657	plastid organization	BP	4.59951776793187e-05	MDA1//DG1//HCF106//CAA33//PMI15//VAR3//AT5G13770//PMDH2//AT3G59040//AT3G49140//AT3G48200//PDE312//PGR3//EMB2369//AGY1//PRK//AtCHUP1//ABI3//EMB1865//ATHPR1//ATECB2//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6//AtTLP18.3//ATGPA1
GO:0009658	chloroplast organization	BP	4.89140562143026e-05	MDA1//DG1//CAA33//PMI15//VAR3//AT5G13770//PMDH2//AT3G59040//AT3G48200//PGR3//EMB2369//AGY1//PRK//AtCHUP1//EMB1865//ATECB2//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0006396	RNA processing	BP	6.96170594501451e-05	FAR1//AT4G15820//ATU2AF65A//EMB2782//HEN4//ATCUL4//AT5G14500//AT5G11720//GAUT3//EMB1989//TPR9//ATPRP40B//IDM1//ATCFM3A//CRM3//CDC48C//CPSF73-I//STIPL1//CRWN2//AtMTR4//ATCAF2//RNE//CHR35//AT1G22660//CHR3//ATRAD50//AT2G16940//ATGPA1
GO:0006281	DNA repair	BP	7.39224655006793e-05	FAR1//ATRAD18//ATCUL4//ATREV1//HAC11//ATATM//ATMLH1//AT3G02400//DML2//SPA4//AtMTR4//DML1//ATRAD50//ATMAP70-3//PFU2//ATCOP1
GO:0046483	heterocycle metabolic process	BP	8.97409622549674e-05	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//ATHMA1//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G23330//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//ATCCD1//AT3G59040//GUN4//BPG2//ATDFD//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G18820//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G55090//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//DGD1//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AT2G21210//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//AT2G32170//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0034641	cellular nitrogen compound metabolic pro...	BP	0.000120705475277795	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//ATHMA1//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G23330//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//ATCCD1//AT3G59040//GUN4//ATGCN2//BPG2//ATDFD//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G18820//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G55090//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//DGD1//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AT2G21210//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//AT2G32170//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0006807	nitrogen compound metabolic process	BP	0.000185435763139218	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//ATHMA1//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G53850//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G23330//AT5G14500//AT5G13980//RARE1//AT5G11720//HAC11//PMDH2//ATCCD1//AT3G59040//GUN4//ATGCN2//BPG2//ATDFD//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//SHM1//GAUT3//SLOMO//PGR3//NINJA//CER2//EMB1989//B160//AT4G18820//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G55090//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//DGD1//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//AT1G26640//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AT2G42690//AT2G21210//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//AT2G32170//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0006725	cellular aromatic compound metabolic pro...	BP	0.000290024133851032	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//ATHMA1//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//ATCCD1//ADL1E//AT3G59040//GUN4//BPG2//ATDFD//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//SHM1//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G18820//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G55090//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//DGD1//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AT2G21210//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//AT2G32170//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0033554	cellular response to stress	BP	0.000385378363998985	FAR1//AT5G63710//ATRAD18//ATCUL4//ATREV1//AT5G44080//ATCLC-A//AHK2//HAC11//PMDH2//ADL1E//UGP3//ATATM//SHM1//EX1//ATMLH1//PRK//AT3G19370//AT3G02400//PDLZ2//DML2//DGD1//ATHPR1//CER8//SPA4//AtMTR4//ATPPC2//AT2G21560//DML1//AT2G42690//ATRAD50//ATMAP70-3//PFU2//ATBAG6//ATCOP1
GO:1901360	organic cyclic compound metabolic proces...	BP	0.000416398081628512	ATCG00800//ATCAO//FAR1//AT4G15820//CHR23//AT5G20170//ATU2AF65A//ATHMA1//AT1G31920//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//AT5G62840//ATRAD18//ARF4//AT5G59700//AT5G56850//MGO1//AT5G49470//ATCUL4//ATREV1//AT5G44080//NF-YC12//AHK2//AT5G23330//AT5G14500//RARE1//AT5G11720//HAC11//PMDH2//ATCCD1//ADL1E//AT3G59040//GUN4//BPG2//ATDFD//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//SHM1//GAUT3//SLOMO//PGR3//NINJA//EMB1989//B160//AT4G18820//AT4G18060//AT4G10930//ATMLH1//EMB2369//AT4G00990//PRK//AT2G33440//AT1G20370//GDPDL2//ZYP1//AT1G55090//AT1G50920//TPR9//AtCHUP1//ABI3//AT3G25840//ATPRP40B//IDM1//EMB1865//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//DGD1//CDC48C//CPSF73-I//AT1G72550//ATHPR1//AT1G62310//SPA4//AT1G18485//ATECB2//CBRLK1//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//AT2G13440//AT1G65230//RNE//CHR35//ATSIG6//DML1//AT2G21210//AtTLP18.3//AT1G22660//AT1G03910//CHR3//ATRAD50//AT2G32170//ATMAP70-3//ANAC034//AtPUB12//PFU2//AT2G16940//AT2G38300//AT2G14800//ATGPA1//ATCOP1
GO:0009902	chloroplast relocation	BP	0.000426850199310096	PMI15//PMDH2//AT3G48200//PGR3//PRK//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0019750	chloroplast localization	BP	0.000426850199310096	PMI15//PMDH2//AT3G48200//PGR3//PRK//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0051644	plastid localization	BP	0.000426850199310096	PMI15//PMDH2//AT3G48200//PGR3//PRK//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0051667	establishment of plastid localization	BP	0.000426850199310096	PMI15//PMDH2//AT3G48200//PGR3//PRK//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0045132	meiotic chromosome segregation	BP	0.000488281322735213	CHR23//ATRAD18//AT5G59700//ATATM//AT3G46960//GAUT3//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:0051656	establishment of organelle localization	BP	0.00052130652618246	PMI15//PMDH2//AT3G48200//PGR3//PRK//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0010467	gene expression	BP	0.000604758627245076	ATCG00800//ATCAO//FAR1//CLPR4//AT4G15820//CHR23//AT5G20170//ATU2AF65A//EMB2782//AT5G35170//DG1//ATDDM1//HEN4//ATRAD18//ARF4//SNX2a//AT5G49470//ATCUL4//AT5G44080//NF-YC12//AHK2//AT5G14500//AT5G11720//HAC11//PMDH2//MAP2B//GUN4//SIG3//ATATM//PDE312//AT3G46960//GAUT3//NINJA//EMB1989//B160//ATMLH1//EMB2369//AT4G00990//TPR9//AtCHUP1//ABI3//ATPRP40B//IDM1//ATCFM3A//AT3G02400//CRM3//PDLZ2//DML2//CDC48C//CPSF73-I//AT1G72550//AT1G62310//ACD//FUG1//STIPL1//ATSCO1//CRWN2//RPOD1//AtMTR4//ATCAF2//RNE//CHR35//AT2G40430//ATSIG6//DML1//AT1G22660//AT1G03910//CHR3//ATRAD50//ATMAP70-3//ANAC034//AtPUB12//AT2G16940//AT2G38300//ATGPA1
GO:0006996	organelle organization	BP	0.00062379554615057	FAR1//MDA1//CHR23//EMB2782//DG1//ATDDM1//ATRAD18//AT5G59700//MGO1//ATK3//HCF106//CAA33//ATCUL4//ATREV1//PMI15//AT5G22820//VAR3//AT5G13980//AT5G13770//PMDH2//EMB2817//AT3G59040//ATVPS33//AT3G49140//ATATM//AT3G48200//PDE312//AT3G46960//AT3G45850//GAUT3//PGR3//AT4G18060//ATMLH1//EMB2369//AGY1//PRK//AT1G20370//ZYP1//AtCHUP1//AT3G15120//ABI3//IDM1//EMB1865//CDC48C//MAP65-8//CPSF73-I//ATHPR1//ATECB2//FUG1//ATSCO1//CRWN2//ATMAP70-4//AtMTR4//AT1G65230//RNE//CHR35//ATSIG6//DML1//AtTLP18.3//AT2G20330//CHR3//ATRAD50//ATMAP70-3//GC4//AT2G14800//ATGPA1
GO:0006302	double-strand break repair	BP	0.000765094007825037	FAR1//ATRAD18//ATATM//ATMLH1//AT3G02400//AtMTR4//ATRAD50//ATMAP70-3
GO:0007059	chromosome segregation	BP	0.00083705882789063	CHR23//EMB2782//ATRAD18//AT5G59700//ATCUL4//ATATM//AT3G46960//GAUT3//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:0006974	cellular response to DNA damage stimulus	BP	0.000858502356204192	FAR1//ATRAD18//ATCUL4//ATREV1//HAC11//ATATM//ATMLH1//AT3G02400//DML2//SPA4//AtMTR4//DML1//ATRAD50//ATMAP70-3//PFU2//ATCOP1
GO:0051716	cellular response to stimulus	BP	0.00138580672132383	FAR1//EMB2782//AT5G63710//ATRAD18//SNX2a//MGO1//AT5G49470//ATCUL4//AT5G46270//ATREV1//AT5G44080//ATCLC-A//AHK2//HAC11//PMDH2//ADL1E//GUN4//BPG2//UGP3//SIG3//ATATM//SHM1//GAUT3//EX1//NINJA//AT4G23740//ATMLH1//PRK//TPR9//ATGLR3.3//ABI3//IDM1//AT3G19370//CIPK1//AT3G02400//PDLZ2//DML2//DGD1//CDC48C//ATHPR1//AT1G63750//CER8//SPA4//CRWN2//RPOD1//AtMTR4//ATPPC2//AT2G21560//CHR35//ATSIG6//DML1//AT2G42690//CHR3//ATRAD50//ATMAP70-3//PFU2//ATBAG6//ATMPK12//ATGPA1//AT2G02780//ATCOP1
GO:0071478	cellular response to radiation	BP	0.00140917833159081	FAR1//SIG3//ATHPR1//RPOD1//ATSIG6//AT2G42690//ATGPA1
GO:0071482	cellular response to light stimulus	BP	0.00140917833159081	FAR1//SIG3//ATHPR1//RPOD1//ATSIG6//AT2G42690//ATGPA1
GO:0007062	sister chromatid cohesion	BP	0.00177464305726166	CHR23//EMB2782//ATRAD18//AT5G59700//ATCUL4//ATATM//AT3G46960//GAUT3//ATMLH1//ATMAP70-3
GO:0009314	response to radiation	BP	0.00192803747207367	FAR1//CHR23//ATHMA1//ATRAD18//MGO1//AT5G47800//ATCUL4//ATREV1//PMI15//HAC11//PMDH2//SIG3//ATATM//SHM1//GAUT3//AT4G33500//AGY1//PRK//ATGLR3.3//TIC//AT3G02400//CDC48C//ATHPR1//SPA4//ATECB2//CBRLK1//RPOD1//AtMTR4//ATSIG6//AT2G42690//AtTLP18.3//AT2G20330//CHR3//ATRAD50//ATBAG6//ATGPA1//ATCOP1
GO:0006259	DNA metabolic process	BP	0.00200454796889018	FAR1//CHR23//ATDDM1//ATRAD18//AT5G59700//MGO1//ATCUL4//ATREV1//HAC11//ATATM//GAUT3//AT4G18820//ATMLH1//ZYP1//IDM1//AT3G02400//DML2//SPA4//AtMTR4//CHR35//DML1//CHR3//ATRAD50//ATMAP70-3//PFU2//AT2G14800//ATCOP1
GO:0008380	RNA splicing	BP	0.00231653256337201	AT4G15820//ATU2AF65A//AT5G14500//AT5G11720//EMB1989//TPR9//ATPRP40B//ATCFM3A//CDC48C//STIPL1//AtMTR4//ATCAF2//AT2G16940
GO:0090351	seedling development	BP	0.00235621740501709	SNX2a//MGO1//ATCUL4//AHK2//GAUT3//ATMLH1//ATSCO1//ATSIG6//CHR3//ATRAD50//ATGPA1
GO:0051321	meiotic cell cycle	BP	0.00248598214203207	CHR23//ATRAD18//AT5G59700//ATATM//AT3G46960//GAUT3//ATMLH1//ATGSL01//ZYP1//ATGSL04//ATGSL03//ATMAP70-3//AT2G14800
GO:0016556	mRNA modification	BP	0.00255758264720878	AT1G31920//AT5G62840//AT5G56850//RARE1//BPG2//AT3G48200//EMB2369//GDPDL2//AT1G18485//CBRLK1//RNE
GO:0006397	mRNA processing	BP	0.00270593167396143	ATU2AF65A//HEN4//CRM3//CDC48C//CPSF73-I//STIPL1//AtMTR4//RNE//AT2G16940
GO:0042752	regulation of circadian rhythm	BP	0.00288270234082461	FAR1//TIC//STIPL1//ATCOP1
GO:0051604	protein maturation	BP	0.00288270234082461	SNX2a//MAP2B//ACD//AT1G03910
GO:1903046	meiotic cell cycle process	BP	0.00305964704981681	CHR23//ATRAD18//AT5G59700//ATATM//AT3G46960//GAUT3//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:0051640	organelle localization	BP	0.00354799455668574	PMI15//PMDH2//AT3G48200//PGR3//PRK//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6
GO:0000375	RNA splicing, via transesterification re...	BP	0.00359243682206049	ATU2AF65A//ATCFM3A//CDC48C//STIPL1//AtMTR4//ATCAF2//AT2G16940
GO:0000377	RNA splicing, via transesterification re...	BP	0.00359243682206049	ATU2AF65A//ATCFM3A//CDC48C//STIPL1//AtMTR4//ATCAF2//AT2G16940
GO:0071214	cellular response to abiotic stimulus	BP	0.00372639255519818	FAR1//SIG3//PDLZ2//ATHPR1//RPOD1//ATSIG6//AT2G42690//ATGPA1
GO:0009416	response to light stimulus	BP	0.0039257775733996	FAR1//CHR23//ATHMA1//MGO1//AT5G47800//ATCUL4//ATREV1//PMI15//HAC11//PMDH2//SIG3//SHM1//GAUT3//AT4G33500//AGY1//PRK//ATGLR3.3//TIC//CDC48C//ATHPR1//SPA4//ATECB2//CBRLK1//RPOD1//AtMTR4//ATSIG6//AT2G42690//AtTLP18.3//AT2G20330//CHR3//ATRAD50//ATBAG6//ATGPA1//ATCOP1
GO:0016109	tetraterpenoid biosynthetic process	BP	0.00499756433912766	PMDH2//ATCCD1//GUN4//EMB1865//DGD1//PDE181//AT1G65230//ATSIG6//AT2G42690//AtTLP18.3
GO:0016117	carotenoid biosynthetic process	BP	0.00499756433912766	PMDH2//ATCCD1//GUN4//EMB1865//DGD1//PDE181//AT1G65230//ATSIG6//AT2G42690//AtTLP18.3
GO:0031047	gene silencing by RNA	BP	0.00522712085305431	CHR23//EMB2782//ATDDM1//ATRAD18//AT3G46960//GAUT3//ATMLH1//TPR9//IDM1//CDC48C//CPSF73-I//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50//ATMAP70-3
GO:0019374	galactolipid metabolic process	BP	0.00527926006674553	UGP3//ATSPS4F//PDLZ2//DGD1//ATPPC2//AT2G42690
GO:0019375	galactolipid biosynthetic process	BP	0.00527926006674553	UGP3//ATSPS4F//PDLZ2//DGD1//ATPPC2//AT2G42690
GO:0016108	tetraterpenoid metabolic process	BP	0.00582286953589657	PMDH2//ATCCD1//GUN4//EMB1865//DGD1//PDE181//AT1G65230//ATSIG6//AT2G42690//AtTLP18.3
GO:0016116	carotenoid metabolic process	BP	0.00582286953589657	PMDH2//ATCCD1//GUN4//EMB1865//DGD1//PDE181//AT1G65230//ATSIG6//AT2G42690//AtTLP18.3
GO:0009636	response to toxic substance	BP	0.0070666792951666	ATHMA1//AHK2//CLB6
GO:0016567	protein ubiquitination	BP	0.00713958260888554	FAR1//CHR23//MGO1//ATCUL4//GAUT3//CDC48C//AtMTR4//CHR3//ATRAD50//AtPUB12//AT2G41980
GO:0009451	RNA modification	BP	0.0073029418919392	AT1G31920//AT5G62840//AT5G56850//RARE1//BPG2//AT3G48200//EMB2369//AT1G20370//GDPDL2//AT1G50920//AT1G18485//ATECB2//CBRLK1//AT2G13440//RNE
GO:0007129	synapsis	BP	0.00758672119781921	ATATM//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:0045143	homologous chromosome segregation	BP	0.00758672119781921	ATATM//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:0009247	glycolipid biosynthetic process	BP	0.00764234608977821	UGP3//ATSPS4F//PDLZ2//DGD1//ATPPC2//AT2G42690
GO:0009893	positive regulation of metabolic process	BP	0.00813466218634278	ATCAO//FAR1//CHR23//ATDDM1//AT5G63710//ATRAD18//PMDH2//GUN4//ATATM//AT3G48200//PDE312//GAUT3//AT4G33500//AT4G18060//AtCHUP1//AT3G19000//ABI3//AT3G19370//CDC48C//ATSCO1//AtMTR4//AT2G21560//ATSIG6//DML1//ATCOP1
GO:0009891	positive regulation of biosynthetic proc...	BP	0.00834386846827061	ATCAO//FAR1//CHR23//AT5G63710//ATRAD18//PMDH2//GUN4//ATATM//PDE312//GAUT3//AtCHUP1//ABI3//AT3G19370//CDC48C//ATSCO1//AtMTR4//AT2G21560//ATSIG6//DML1//ATCOP1
GO:0070192	chromosome organization involved in meio...	BP	0.00874218424624751	ATATM//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:0006351	transcription, DNA-templated	BP	0.00921875114035747	ATCG00800//ATCAO//FAR1//CHR23//AT5G20170//AT5G35170//DG1//ATDDM1//ATRAD18//ARF4//AT5G49470//AT5G44080//NF-YC12//AHK2//HAC11//PMDH2//GUN4//SIG3//ATATM//PDE312//AT3G46960//GAUT3//NINJA//EMB1989//B160//AT4G00990//AtCHUP1//ABI3//IDM1//AT3G02400//PDLZ2//CDC48C//CPSF73-I//AT1G62310//FUG1//ATSCO1//CRWN2//RPOD1//AtMTR4//RNE//CHR35//ATSIG6//DML1//CHR3//ATMAP70-3//ANAC034//AtPUB12//AT2G38300
GO:0097659	nucleic acid-templated transcription	BP	0.00921875114035747	ATCG00800//ATCAO//FAR1//CHR23//AT5G20170//AT5G35170//DG1//ATDDM1//ATRAD18//ARF4//AT5G49470//AT5G44080//NF-YC12//AHK2//HAC11//PMDH2//GUN4//SIG3//ATATM//PDE312//AT3G46960//GAUT3//NINJA//EMB1989//B160//AT4G00990//AtCHUP1//ABI3//IDM1//AT3G02400//PDLZ2//CDC48C//CPSF73-I//AT1G62310//FUG1//ATSCO1//CRWN2//RPOD1//AtMTR4//RNE//CHR35//ATSIG6//DML1//CHR3//ATMAP70-3//ANAC034//AtPUB12//AT2G38300
GO:1901698	response to nitrogen compound	BP	0.00954813717036231	EMB2782//ATCLC-A//ADL1E//PME1//PRK//TPR9//ATGLR3.3//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//AT2G21210//CHR3//ATRAD50//AtPUB12//ATMPK12
GO:0009640	photomorphogenesis	BP	0.00981819088315525	FAR1//CHR23//MGO1//ATCUL4//GAUT3//CDC48C//SPA4//AtMTR4//CHR3//ATRAD50//ATCOP1
GO:0032774	RNA biosynthetic process	BP	0.00985211082711489	ATCG00800//ATCAO//FAR1//CHR23//AT5G20170//AT5G35170//DG1//ATDDM1//ATRAD18//ARF4//AT5G49470//AT5G44080//NF-YC12//AHK2//HAC11//PMDH2//GUN4//SIG3//ATATM//PDE312//AT3G46960//GAUT3//NINJA//EMB1989//B160//AT4G00990//AtCHUP1//ABI3//IDM1//AT3G02400//PDLZ2//CDC48C//CPSF73-I//AT1G62310//FUG1//ATSCO1//CRWN2//RPOD1//AtMTR4//RNE//CHR35//ATSIG6//DML1//CHR3//ATMAP70-3//ANAC034//AtPUB12//AT2G38300
GO:0034660	ncRNA metabolic process	BP	0.0101456242995021	PMDH2//AT3G59040//GUN4//PGR3//EMB2369//PRK//AtCHUP1//EMB1865//AT1G72550//ATHPR1//ACD//FUG1//ATSCO1//AtMTR4//AT2G13440//AT1G65230//RNE//ATSIG6//AtTLP18.3//AT1G22660
GO:0032446	protein modification by small protein co...	BP	0.0104363180350658	FAR1//CHR23//MGO1//ATCUL4//GAUT3//CDC48C//AtMTR4//CHR3//ATRAD50//AtPUB12//AT2G41980
GO:0000724	double-strand break repair via homologou...	BP	0.0114069133808066	FAR1//ATRAD18//ATATM//ATMLH1//AtMTR4
GO:0000725	recombinational repair	BP	0.0114069133808066	FAR1//ATRAD18//ATATM//ATMLH1//AtMTR4
GO:0009668	plastid membrane organization	BP	0.0118706957356367	HCF106//AT3G49140//PGR3//EMB2369//AGY1//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6//ATGPA1
GO:0010027	thylakoid membrane organization	BP	0.0118706957356367	HCF106//AT3G49140//PGR3//EMB2369//AGY1//AtCHUP1//EMB1865//FUG1//ATSCO1//AT1G65230//RNE//ATSIG6//ATGPA1
GO:0006074	(1->3)-beta-D-glucan metabolic process	BP	0.0121723938636345	ATGSL01//ATGSL04//ATGSL03
GO:0006075	(1->3)-beta-D-glucan biosynthetic proces...	BP	0.0121723938636345	ATGSL01//ATGSL04//ATGSL03
GO:0010100	negative regulation of photomorphogenesi...	BP	0.0121723938636345	ATCUL4//SPA4//ATCOP1
GO:0044802	single-organism membrane organization	BP	0.0123582880382785	AT5G63710//HCF106//PMDH2//ADL1E//AT3G49140//PGR3//EMB2369//AGY1//PRK//AtCHUP1//EMB1865//AT3G19370//FUG1//ATSCO1//AT1G65230//RNE//AT2G21560//ATSIG6//ATGPA1
GO:0007126	meiotic nuclear division	BP	0.0124220855371688	CHR23//ATRAD18//AT5G59700//ATATM//AT3G46960//GAUT3//ATMLH1//ZYP1//ATMAP70-3//AT2G14800
GO:1901699	cellular response to nitrogen compound	BP	0.0132244117196015	EMB2782//TPR9//ATGLR3.3//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0061024	membrane organization	BP	0.0133335241842604	AT5G63710//HCF106//PMDH2//ADL1E//AT3G49140//PGR3//EMB2369//AGY1//PRK//AtCHUP1//EMB1865//AT3G19370//FUG1//ATSCO1//AT1G65230//RNE//AT2G21560//ATSIG6//ATGPA1
GO:0035196	production of miRNAs involved in gene si...	BP	0.0137591516390262	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:1902589	single-organism organelle organization	BP	0.0139030788463888	FAR1//CHR23//EMB2782//DG1//ATDDM1//ATRAD18//AT5G59700//ATK3//ATCUL4//ATREV1//AT5G22820//AT5G13980//EMB2817//ATATM//PDE312//AT3G46960//AT3G45850//GAUT3//AT4G18060//ATMLH1//ZYP1//AtCHUP1//AT3G15120//IDM1//CDC48C//MAP65-8//CPSF73-I//FUG1//ATSCO1//CRWN2//AtMTR4//RNE//CHR35//CHR3//ATRAD50//ATMAP70-3//AT2G14800
GO:0009845	seed germination	BP	0.0147092032739549	MGO1//ATCUL4//AHK2//GAUT3//ATMLH1//ATSCO1//CHR3//ATRAD50//ATGPA1
GO:0051276	chromosome organization	BP	0.0149202634199635	FAR1//CHR23//EMB2782//ATDDM1//ATRAD18//AT5G59700//MGO1//ATCUL4//ATATM//AT3G46960//GAUT3//ATMLH1//AT1G20370//ZYP1//AT3G15120//IDM1//CDC48C//CPSF73-I//CRWN2//AtMTR4//CHR35//DML1//CHR3//ATRAD50//ATMAP70-3//AT2G14800
GO:0010099	regulation of photomorphogenesis	BP	0.015339951824152	ATCUL4//SPA4//ATCOP1
GO:0016246	RNA interference	BP	0.0156381280688028	EMB2782//ATDDM1//TPR9//IDM1//CDC48C//CPSF73-I//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0016114	terpenoid biosynthetic process	BP	0.015954681113787	PMDH2//ATCCD1//AT3G59580//GUN4//ABI3//EMB1865//DGD1//PDE181//AT1G65230//ATSIG6//AT2G42690//AtTLP18.3
GO:0006664	glycolipid metabolic process	BP	0.0159639968743305	UGP3//ATSPS4F//PDLZ2//DGD1//ATPPC2//AT2G42690
GO:0046467	membrane lipid biosynthetic process	BP	0.0159639968743305	UGP3//ATSPS4F//PDLZ2//DGD1//ATPPC2//AT2G42690
GO:0016458	gene silencing	BP	0.0168591579075099	CHR23//EMB2782//ATDDM1//ATRAD18//AT3G46960//GAUT3//ATMLH1//TPR9//IDM1//CDC48C//CPSF73-I//CRWN2//AtMTR4//CHR35//DML1//CHR3//ATRAD50//ATMAP70-3
GO:0009637	response to blue light	BP	0.017283908234927	PMI15//AT4G33500//PRK//ATHPR1//CBRLK1//ATSIG6//AtTLP18.3//ATGPA1
GO:0030422	production of siRNA involved in RNA inte...	BP	0.0178501103033229	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0019222	regulation of metabolic process	BP	0.0182379186662614	ATCAO//FAR1//CLPR4//CHR23//AT5G20170//EMB2782//ATDDM1//AT5G63710//ATRAD18//ARF4//AT5G49470//AT5G44080//NF-YC12//AHK2//HAC11//PMDH2//ADL1E//GUN4//ATGCN2//SIG3//ATATM//AT3G48200//PDE312//AT3G46960//GAUT3//AT4G33500//NINJA//B160//AT4G18060//ATMLH1//AGY1//AT4G00990//PRK//TPR9//AtCHUP1//AT3G19000//ABI3//IDM1//AT3G19370//AT3G02400//PDLZ2//DML2//DGD1//CDC48C//CPSF73-I//ATHPR1//AT1G62310//ATSCO1//CRWN2//RPOD1//AtMTR4//AT2G21560//CHR35//ATSIG6//DML1//AtTLP18.3//CHR3//ATRAD50//ATMAP70-3//ANAC034//AT2G38300//ATCOP1
GO:0035195	gene silencing by miRNA	BP	0.018998298067364	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0080090	regulation of primary metabolic process	BP	0.0206270932052346	ATCAO//FAR1//CHR23//AT5G20170//ATDDM1//AT5G63710//ATRAD18//ARF4//AT5G49470//AT5G44080//NF-YC12//AHK2//HAC11//PMDH2//GUN4//ATGCN2//SIG3//ATATM//PDE312//AT3G46960//GAUT3//NINJA//B160//ATMLH1//AT4G00990//PRK//AtCHUP1//ABI3//IDM1//AT3G19370//AT3G02400//PDLZ2//CDC48C//CPSF73-I//ATHPR1//AT1G62310//ATSCO1//CRWN2//RPOD1//AtMTR4//AT2G21560//CHR35//ATSIG6//DML1//AtTLP18.3//CHR3//ATMAP70-3//ANAC034//AT2G38300//ATCOP1
GO:1903509	liposaccharide metabolic process	BP	0.0209453646411107	UGP3//ATSPS4F//PDLZ2//DGD1//ATPPC2//AT2G42690
GO:0010629	negative regulation of gene expression	BP	0.021394899203888	CHR23//EMB2782//ATDDM1//ATRAD18//AT3G46960//GAUT3//NINJA//ATMLH1//TPR9//IDM1//PDLZ2//CDC48C//CPSF73-I//CRWN2//AtMTR4//CHR35//DML1//CHR3//ATRAD50//ATMAP70-3
GO:0006721	terpenoid metabolic process	BP	0.0214375070742879	PMDH2//ATCCD1//AT3G59580//GUN4//ABI3//EMB1865//DGD1//PDE181//AT1G65230//ATSIG6//AT2G42690//AtTLP18.3
GO:0031050	dsRNA fragmentation	BP	0.0214540646971813	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0043331	response to dsRNA	BP	0.0214540646971813	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0070918	production of small RNA involved in gene...	BP	0.0214540646971813	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50
GO:0071359	cellular response to dsRNA	BP	0.0214540646971813	EMB2782//TPR9//IDM1//CDC48C//CRWN2//AtMTR4//CHR35//CHR3//ATRAD50