GOID TERM ONTOLOGY pValue Genes GO:0006473 protein acetylation BP 0.00670654873713253 AtSGF29b//ATHD1//ATM1 GO:0010817 regulation of hormone levels BP 0.00733847539762675 AHL22//AtNIK1//ARLA1A//SIM//AT5G01990//AtGRXS17//GAMMA-TIP2//ABCB15//GH3.17//AT1G71090//AT1G49500//AT2G17500//SKU6//ROPGAP3//BAS1 GO:0009926 auxin polar transport BP 0.0105373816175041 AT5G01990//AtGRXS17//ABCB15//AT1G71090//AT2G17500//ROPGAP3 GO:0019374 galactolipid metabolic process BP 0.0105373816175041 AT4G23000//ATFMN/FHY//ATACP5//CRF8//NF-YA7//ATSPX2 GO:0019375 galactolipid biosynthetic process BP 0.0105373816175041 AT4G23000//ATFMN/FHY//ATACP5//CRF8//NF-YA7//ATSPX2 GO:0048527 lateral root development BP 0.0105373816175041 CYP708//AtTHAS1//CYP705A12//WIP3//NRP1//AGL12 GO:0009914 hormone transport BP 0.0121442743383664 AT5G01990//AtGRXS17//ABCB15//AT1G71090//AT2G17500//ROPGAP3 GO:0060918 auxin transport BP 0.0121442743383664 AT5G01990//AtGRXS17//ABCB15//AT1G71090//AT2G17500//ROPGAP3 GO:0006643 membrane lipid metabolic process BP 0.0129020987672339 AT4G38500//AT4G23000//ATFMN/FHY//ATACP5//CRF8//ATSMO1//NF-YA7//ATSPX2 GO:0032270 positive regulation of cellular protein ... BP 0.0160658652585588 ATPDK1//AME3//AT3G15220 GO:0009267 cellular response to starvation BP 0.0180777271582968 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0051701 interaction with host BP 0.0181178532134006 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//ATNSI//FDM3//PPK1 GO:0051247 positive regulation of protein metabolic... BP 0.018508161285905 ATPDK1//AME3//AT3G15220 GO:0051607 defense response to virus BP 0.019076240646024 AT5G08430//AtNIK1//ATUK/UPRT1//ARLA1A//ATHMT-2//RDR2//FDM3//PPK1 GO:0046467 membrane lipid biosynthetic process BP 0.020113227007612 AT4G23000//ATFMN/FHY//ATACP5//CRF8//ATSMO1//NF-YA7//ATSPX2 GO:0042594 response to starvation BP 0.0202766356401456 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0009247 glycolipid biosynthetic process BP 0.0202999720579522 AT4G23000//ATFMN/FHY//ATACP5//CRF8//NF-YA7//ATSPX2 GO:0048528 post-embryonic root development BP 0.0202999720579522 CYP708//AtTHAS1//CYP705A12//WIP3//NRP1//AGL12 GO:0044403 symbiosis, encompassing mutualism throug... BP 0.0233864310824298 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//ATNSI//FDM3//PPK1 GO:0031669 cellular response to nutrient levels BP 0.0235050311841507 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0016036 cellular response to phosphate starvatio... BP 0.0255152967245035 AT4G23000//ATFMN/FHY//ATACP5//CRF8//NF-YA7//ATSPX2 GO:0044419 interspecies interaction between organis... BP 0.0257622175832005 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//ATNSI//FDM3//PPK1 GO:0002252 immune effector process BP 0.0260044739931159 AT5G08430//AtNIK1//ATUK/UPRT1//ARLA1A//ATHMT-2//RDR2//FDM3//PPK1 GO:0048878 chemical homeostasis BP 0.0274407308214486 ATHMA1//AT5G27290//ABCB25//ATCBL2//ATSNX1//GAMMA-TIP2//ATACP5//GH3.17//BAS1 GO:0006664 glycolipid metabolic process BP 0.0284294803402271 AT4G23000//ATFMN/FHY//ATACP5//CRF8//NF-YA7//ATSPX2 GO:0009615 response to virus BP 0.0294516191965485 AT5G08430//AtNIK1//ATUK/UPRT1//ARLA1A//ATHMT-2//RDR2//FDM3//PPK1 GO:0031667 response to nutrient levels BP 0.0310506392305333 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0006520 cellular amino acid metabolic process BP 0.032746913948386 AT2G33180//AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ASPGA1//ATHMT-2//AtLCD//AT3G60750//AT3G54080//AGT2//AT3G29750//GAMMA-TIP2//HISN5A//TWN2//GLX2-4//ACD1//AT1G49500//AT2G17500//ATGGH2 GO:1903509 liposaccharide metabolic process BP 0.0331988084355163 AT4G23000//ATFMN/FHY//ATACP5//CRF8//NF-YA7//ATSPX2 GO:0009616 virus induced gene silencing BP 0.0348970509918616 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0052018 modulation by symbiont of RNA levels in ... BP 0.0348970509918616 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0052249 modulation of RNA levels in other organi... BP 0.0348970509918616 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0098586 cellular response to virus BP 0.0348970509918616 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0009066 aspartate family amino acid metabolic pr... BP 0.0353646150452466 AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ASPGA1//ATHMT-2//AT3G54080 GO:0006096 glycolytic process BP 0.0386907468620333 PFK4//ATPIP1//AT3G60750//GAMMA-TIP2//RCI2A//NRP1//ACD1//ATPAE1 GO:0000394 RNA splicing, via endonucleolytic cleava... BP 0.0401207483898339 AT5G08430//AT1G57540//AT5G65760//SPT42//ATUK/UPRT1//ATHMT-2//AT3G54080 GO:0009064 glutamine family amino acid metabolic pr... BP 0.0410324312844713 ASPGA1//AGT2//ATGGH2 GO:0009086 methionine biosynthetic process BP 0.0422455168066078 AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ATHMT-2//AT3G54080 GO:0035821 modification of morphology or physiology... BP 0.0422455168066078 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0044003 modification by symbiont of host morphol... BP 0.0422455168066078 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0051817 modification of morphology or physiology... BP 0.0422455168066078 AT5G08430//ATUK/UPRT1//ATHMT-2//RDR2//FDM3//PPK1 GO:0065008 regulation of biological quality BP 0.0436559784808831 AHL22//AT5G08430//ATHMA1//AtNIK1//AT5G27290//ABCB25//ATCBL2//ATUK/UPRT1//ARLA1A//ATSNX1//SIM//AT5G01990//ATHMT-2//ADL2//RDR2//AtGRXS17//FDM3//GAMMA-TIP2//ABCB15//ATACP5//GH3.17//PPK1//AT1G71090//AT1G49500//AT2G17500//SKU6//ROPGAP3//BAS1 GO:0006555 methionine metabolic process BP 0.0442235778643233 AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ATHMT-2//AT3G54080 GO:0045892 negative regulation of transcription, DN... BP 0.0447325834761546 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0447325834761546 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0447325834761546 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0458481543218295 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0031668 cellular response to extracellular stimu... BP 0.0481076831315675 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0071496 cellular response to external stimulus BP 0.0495270159955451 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0043603 cellular amide metabolic process BP 0.0511410339093879 OXP1//ASPGA1//AT4G38500//ATGGH2 GO:0031324 negative regulation of cellular metaboli... BP 0.0512954869464034 ATREV7//KAC2//AT5G13240//SIM//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0051783 regulation of nuclear division BP 0.0518579022983501 ATREV7//SIM GO:0045934 negative regulation of nucleobase-contai... BP 0.0529510298266603 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0006722 triterpenoid metabolic process BP 0.0535239012516828 04C11//CYP708//AtTHAS1 GO:0048582 positive regulation of post-embryonic de... BP 0.0535239012516828 E12A11//ATCUL3//AGL17 GO:0009063 cellular amino acid catabolic process BP 0.0551948573960174 ASPGA1//AtLCD//AGT2//ACD1//AT1G49500 GO:1901606 alpha-amino acid catabolic process BP 0.0551948573960174 ASPGA1//AtLCD//AGT2//ACD1//AT1G49500 GO:0010558 negative regulation of macromolecule bio... BP 0.0554775484493718 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0051172 negative regulation of nitrogen compound... BP 0.0554775484493718 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:2000113 negative regulation of cellular macromol... BP 0.0554775484493718 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0043622 cortical microtubule organization BP 0.0593831278918864 MIDD1//SKU6 GO:0045727 positive regulation of translation BP 0.0593831278918864 AME3//AT3G15220 GO:0009991 response to extracellular stimulus BP 0.0602504851010263 CYP708//AT4G23000//ATFMN/FHY//ATACP5//CRF8//AGL12//NF-YA7//CYP705A25//MLP329//ATSPX2 GO:0031327 negative regulation of cellular biosynth... BP 0.0621497295003678 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0009890 negative regulation of biosynthetic proc... BP 0.0649629758229542 KAC2//AT5G13240//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//ATACP5//AT3G09360//PPK1//CRF8//NF-YA7//ATSPX2 GO:0009067 aspartate family amino acid biosynthetic... BP 0.067179169138008 AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ATHMT-2//AT3G54080 GO:0031122 cytoplasmic microtubule organization BP 0.0672562802790217 MIDD1//SKU6 GO:1901605 alpha-amino acid metabolic process BP 0.0714202850841968 AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ASPGA1//ATHMT-2//AtLCD//AT3G60750//AT3G54080//AGT2//GAMMA-TIP2//HISN5A//GLX2-4//ACD1//AT1G49500//ATGGH2 GO:0008380 RNA splicing BP 0.0721402284424136 AT5G08430//AT1G57540//AT5G65760//SPT42//ATUK/UPRT1//ATHMT-2//AT3G54080//RDR2//SMU1 GO:0010639 negative regulation of organelle organiz... BP 0.0754513941281973 ATREV7//SIM GO:0051129 negative regulation of cellular componen... BP 0.0754513941281973 ATREV7//SIM GO:1901564 organonitrogen compound metabolic proces... BP 0.0778088130470805 AT2G33180//AT5G08430//ATHMA1//AT1G57540//SDH1-1//AT5G65760//AT5G63290//ABCB25//ATUK/UPRT1//ARLA1A//OXP1//ASPGA1//ATHMT-2//AtLCD//AT3G60750//AT3G60180//AT3G54080//PGL2//AGT2//AT4G38500//ATFMN/FHY//ATNSI//AT3G29750//GAMMA-TIP2//AT1G71850//HISN5A//PUR4//TWN2//GLX2-4//CNX3//ATSMO1//ACD1//AT1G49500//AT2G17500//ATGGH2 GO:0051240 positive regulation of multicellular org... BP 0.0778503530324878 E12A11//ATCUL3//AGL17 GO:0046686 response to cadmium ion BP 0.0790515005682648 NAD7//ABCB25//AT5G10540//ATPIP1//AT3G60750//AGT2//GAMMA-TIP2//RCI2A//NRP1//ACD1//ATPAE1//ATGGH2 GO:0071804 cellular potassium ion transport BP 0.0839436972133 ATKUP9//KUP11 GO:0071805 potassium ion transmembrane transport BP 0.0839436972133 ATKUP9//KUP11 GO:0010050 vegetative phase change BP 0.084220273914378 AT5G08430//ATUK/UPRT1//ATHMT-2//FDM3 GO:0009161 ribonucleoside monophosphate metabolic p... BP 0.0884156227744143 ATHMA1//SDH1-1//ATUK/UPRT1//PUR4 GO:0051094 positive regulation of developmental pro... BP 0.0887173605802088 E12A11//ATCUL3//AGL17 GO:0015698 inorganic anion transport BP 0.090291875585489 AT5G33280//CYP708//AGL12//CYP705A25//ATPAP8//MLP329//ATSPX2 GO:0030865 cortical cytoskeleton organization BP 0.092709563758991 MIDD1//SKU6 GO:0009123 nucleoside monophosphate metabolic proce... BP 0.092710101038124 ATHMA1//SDH1-1//ATUK/UPRT1//PUR4 GO:0007154 cell communication BP 0.0935174681691407 AtNIK1//ATCBL2//MOL1//AFB5//CYP708//AT5G45780//ARLA1A//ATSNX1//AtbZIP5//ADL2//AT4G23000//ATFMN/FHY//ATWL4//RDR2//ATPLC2//ATB//FDM3//ABCB15//ATACP5//ATRAB18C//AIF1//CLI1//PPK1//CRF8//PYL9//AGL12//EDA10//NF-YA7//CYP705A25//AT1G72890//AT1G27190//MLP329//ARR8//ATSPX2 GO:0044724 single-organism carbohydrate catabolic p... BP 0.103255371996909 PFK4//AT3G63460//ATPIP1//AT3G60750//GAMMA-TIP2//RCI2A//NRP1//ACD1//ATPAE1//PP2A-1 GO:0048285 organelle fission BP 0.105578344713288 ATMSH3//ATREV7//KAC2//ARLA1A//SIM//ADL2//AtGRXS17//AT3G09360//AT1G50270 GO:0006626 protein targeting to mitochondrion BP 0.106124027573115 ADL2//AT4G01790//ATTIM44-2 GO:0070585 protein localization to mitochondrion BP 0.106124027573115 ADL2//AT4G01790//ATTIM44-2 GO:0072655 establishment of protein localization to... BP 0.106124027573115 ADL2//AT4G01790//ATTIM44-2 GO:0009605 response to external stimulus BP 0.108295644109197 AT5G08430//AtNIK1//ABCB25//ATCBL2//AFB5//CYP708//ATUK/UPRT1//AT5G38030//ARLA1A//ATSNX1//ATHMT-2//ATHD1//AT4G23000//ATFMN/FHY//RDR2//FDM3//SGR2//GAMMA-TIP2//ABCB15//ATACP5//AIF1//PPK1//CRF8//HB-1//AGL12//NF-YA7//CYP705A25//ADS2//ATCUL3//AtGRF3//SKU6//MLP329//ATSPX2 GO:0046916 cellular transition metal ion homeostasi... BP 0.110972948151482 ATHMA1//ABCB25 GO:0010167 response to nitrate BP 0.115863600447598 CYP708//AGL12//CYP705A25//ATPAP8//MLP329 GO:2000243 positive regulation of reproductive proc... BP 0.120428549971545 ATCUL3//AGL17 GO:0000096 sulfur amino acid metabolic process BP 0.120452325618472 AT5G08430//AT1G57540//AT5G65760//ATUK/UPRT1//ATHMT-2//AtLCD//AT3G60750//AT3G54080//GAMMA-TIP2//GLX2-4//ACD1 GO:0046364 monosaccharide biosynthetic process BP 0.122990203604177 ATUK/UPRT1//AT3G60750//VTC4//NRP1//ACD1//ATPAE1 GO:0009156 ribonucleoside monophosphate biosyntheti... BP 0.124742658320905 ATHMA1//ATUK/UPRT1//PUR4 GO:0010106 cellular response to iron ion starvation BP 0.125404020466656 CYP708//AGL12//CYP705A25//MLP329 GO:0000280 nuclear division BP 0.127067432298799 ATMSH3//ATREV7//KAC2//ARLA1A//SIM//AtGRXS17//AT3G09360//AT1G50270 GO:0016052 carbohydrate catabolic process BP 0.130013343406141 PFK4//BAM8//AT3G63460//ATPIP1//AT3G60750//GAMMA-TIP2//RCI2A//NRP1//ACD1//ATPAE1//PP2A-1 GO:0019722 calcium-mediated signaling BP 0.130073801134648 ATCBL2//ATWL4 GO:0009124 nucleoside monophosphate biosynthetic pr... BP 0.131195086399246 ATHMA1//ATUK/UPRT1//PUR4