4.0:Analysis result:Information of module
pif3 Dark 1h

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0015979
photosynthesis
BP4.535e-11PSBY Lhca5 AT5G19940 MSP-1 PSAN LHCB3 APE2 LHCB4.1 LHCA1 CAB4 PTAC16 HCF244 PSAL AT4G10750 LHCB5 ATPD PSBQ AGY1 TROL PMI1 GAPA LHCB2 ADS3 PSAH-1 LHCB4.2 ATBCA1 ATCYP38 CLP2 ATFD2 AT1G64355 GAPA-2 PSAO PSAF OE23 CLPP6 PSAD-2 PSBR PSAG LHCA3 PSBX AtTic20-II
GO:0019684
photosynthesis, light reaction
BP9.547e-11PSBY Lhca5 AT5G19940 MSP-1 PSAN LHCB3 APE2 LHCB4.1 LHCA1 CAB4 PTAC16 HCF244 PSAL LHCB5 ATPD TROL PMI1 GAPA LHCB2 ADS3 PSAH-1 LHCB4.2 ATBCA1 ATCYP38 CLP2 ATFD2 AT1G64355 GAPA-2 PSAO OE23 CLPP6 PSAD-2 PSBR PSAG LHCA3 AtTic20-II
GO:0035303
regulation of dephosphorylation
BP1.768e-08PSBY AT5G19940 MSP-1 PSAN APE2 TROL PMI1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 AGL22 TCP10
GO:0035304
regulation of protein dephosphorylation
BP1.768e-08PSBY AT5G19940 MSP-1 PSAN APE2 TROL PMI1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 AGL22 TCP10
GO:0006470
protein dephosphorylation
BP2.352e-08PSBY AT5G19940 MSP-1 PSAN APE2 AT5G02760 TROL PMI1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 TCP10
GO:0016311
dephosphorylation
BP5.037e-08PSBY AT5G19940 MSP-1 PSAN APE2 AT5G02760 TROL PMI1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 TCP10
GO:0000097
sulfur amino acid biosynthetic process
BP2.359e-07PSBY AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN APE2 AST68 ATRPB13.6 CAB4 ATSMO1-2 LHCB5 AT4G08310 TROL ATHMT-1 LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 LIP1 LCR68
GO:0009765
photosynthesis, light harvesting
BP2.854e-07Lhca5 LHCB3 LHCB4.1 LHCA1 CAB4 LHCB5 LHCB2 LHCB4.2 PSAO LHCA3
GO:0019344
cysteine biosynthetic process
BP3.152e-07PSBY AT5G19940 MSP-1 PSAN APE2 AST68 CAB4 ATSMO1-2 LHCB5 TROL LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 LIP1 LCR68
GO:0006534
cysteine metabolic process
BP4.009e-07PSBY AT5G19940 MSP-1 PSAN APE2 AST68 CAB4 ATSMO1-2 LHCB5 TROL LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 LIP1 LCR68
GO:0010218
response to far red light
BP4.289e-07ACL5 LHCB4.1 LHCA1 PTAC16 HCF244 LHCB5 TROL GAPA LHCB2 LHCB4.2 ATFD2 OE23 PSBR FHY2
GO:0031399
regulation of protein modification proce...
BP4.990e-07PSBY AT5G19940 MSP-1 PSAN APE2 TROL PMI1 CYCP2;1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 TCP10
GO:0044272
sulfur compound biosynthetic process
BP6.144e-07PSBY AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN THI1 APE2 AST68 ATRPB13.6 CAB4 PTAC16 ATSMO1-2 LHCB5 AT4G08310 TROL ATHMT-1 AT3G05730 LHCB4.2 GAPC-2 AT1G35420 ACS1 AT1G21440 PSAO PSAF OE23 AOAT1 AIR3 PSBR PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68
GO:0019220
regulation of phosphate metabolic proces...
BP6.367e-07PSBY AT5G19940 MSP-1 PSAN APE2 TROL PMI1 CYCP2;1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 TCP10
GO:0051174
regulation of phosphorus metabolic proce...
BP6.367e-07PSBY AT5G19940 MSP-1 PSAN APE2 TROL PMI1 CYCP2;1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 TCP10
GO:0006812
cation transport
BP6.387e-07AT4G15390 AT5G19940 MSP-1 ATOPT1 THI1 AMK2 AT5G40510 AT5G23830 AT5G17820 AST68 AT5G06740 AT5G05400 LHCB4.1 AT3G58060 LHCA1 CAB4 ATZIP9 AT4G26010 CRR31 PSAL LHCB5 ATPD PSBQ RHS13 CYP87A2 GAPA CCL LHCB2 VHA-E2 LHCB4.2 GLP4 ATFD2 ATZIP4 PSAO OE23 AT1G14780 PSAD-2 AT2G36290 PSBR PSAG ATZIP6
GO:0006811
ion transport
BP6.758e-07AT4G15390 AT5G19940 MSP-1 ATOPT1 THI1 AMK2 APE2 AT5G40510 AT5G23830 AT5G17820 ATNRT2.7 AST68 ATPGIP1 AT5G06740 AT5G05400 LHCB4.1 LAX1 AT3G58060 LHCA1 CAB4 ATZIP9 AT4G26010 CLT2 CRR31 PSAL LHCB5 ATPD PSBQ RHS13 AT1G25530 CYP87A2 GAPA CCL LHCB2 VHA-E2 LHCB4.2 AT1G02360 GLP4 ATFD2 AtRAV2 ATZIP4 ATSAGT1 PSAO OE23 AT1G14780 PSAD-2 AT2G36290 PSBR ATOCT2 PSAG ATZIP6
GO:0009070
serine family amino acid biosynthetic pr...
BP8.026e-07PSBY AT5G19940 MSP-1 PSAN APE2 AST68 CAB4 ATSMO1-2 LHCB5 TROL LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 LIP1 LCR68
GO:0006364
rRNA processing
BP8.153e-07PSBY Lhca5 MSP-1 DIM1B AT5G22440 LHCB4.1 LHCA1 PTAC16 ATHD2A HCF244 PSAL LHCB5 ATPD TROL PMI1 AtGRP4 AT3G13230 GAPA LHCB2 PSAH-1 LHCB4.2 ATCYP38 CLP2 GAPA-2 PSAO OE23 CLPP6
GO:0016072
rRNA metabolic process
BP8.928e-07PSBY Lhca5 MSP-1 DIM1B AT5G22440 LHCB4.1 LHCA1 PTAC16 ATHD2A HCF244 PSAL LHCB5 ATPD TROL PMI1 AtGRP4 AT3G13230 GAPA LHCB2 PSAH-1 LHCB4.2 ATCYP38 CLP2 GAPA-2 PSAO OE23 CLPP6
GO:0009637
response to blue light
BP9.727e-07THI1 LHCB4.1 LHCA1 PTAC16 HCF244 CRR31 LHCB5 TROL GAPA LHCB2 LHCB4.2 ATFD2 OE23 PSBR FHY2
GO:0010207
photosystem II assembly
BP2.053e-06PSBY Lhca5 MSP-1 HCF244 PSAL ATPD TROL PMI1 GAPA PSAH-1 ATCYP38 CLP2 ATFD2 AT1G64355 GAPA-2 PSAO OE23 CLPP6 PSBR AtTic20-II
GO:0010155
regulation of proton transport
BP2.420e-06THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 GAPA LHCB2 LHCB4.2 ATFD2 OE23 PSBR
GO:0006790
sulfur compound metabolic process
BP2.603e-06SUFE2 PSBY AT5G19940 AT1G57540 CAC2 MSP-1 AT5G65760 PSAN THI1 APE2 AST68 ATRPB13.6 CAB4 PTAC16 ATSMO1-2 LHCB5 ATPD AT4G08310 TROL ATHMT-1 AT3G05730 LHCB4.2 GAPC-2 AT1G35420 ACS1 AT1G21440 HYD1 PSAO PSAF OE23 AOAT1 AIR3 PSBR PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68
GO:0000096
sulfur amino acid metabolic process
BP2.748e-06PSBY AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN APE2 AST68 ATRPB13.6 CAB4 ATSMO1-2 LHCB5 AT4G08310 TROL ATHMT-1 LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 LIP1 LCR68
GO:0010054
trichoblast differentiation
BP3.076e-06ATOPT3 ACL5 CAC2 AT5G62340 AT5G17820 CBB3 AT4G30320 AT4G26010 AT4G25790 RHS13 ATPRP1 RALFL27 RHS12 ATEXP7 AtGH9C1 ATEXP18 ADF11 FLA6 AT1G30870 LCR68 ATMLO15
GO:0006091
generation of precursor metabolites and ...
BP3.565e-06PSBY Lhca5 AT5G19940 MSP-1 PSAN LHCB3 AMK2 APE2 LHCB4.1 LHCA1 CAB4 PTAC16 HCF244 PSAL AT4G10750 LHCB5 ATPD TROL PMI1 GAPA LHCB2 ADS3 PSAH-1 LHCB4.2 ATBCA1 ATCYP38 GAPC-2 CLP2 ATFD2 AT1G64355 GAPA-2 PDH-E1 PSAO OE23 CLPP6 PSAD-2 PSBR PSAG LHCA3 AtTic20-II
GO:0009416
response to light stimulus
BP3.772e-06ATOPT3 KNAT4 ACL5 CAC2 GATA23 MSP-1 GIL1 THI1 APE2 AT5G19150 ATFTSH6 SIG4 CBB3 LHCB4.1 GATA4 LHCA1 A11 AMP1 PTAC16 ATSEN1 HCF244 ENP ATFSD1 MSRA4 CRR31 LHCB5 AGY1 TROL GAPA AT3G14750 LHCB2 ADS3 AtRLP33 LHCB4.2 PBC2 ATFD2 PR-5 OE23 RPL10B AGL3 PSBR FHY2 NIP2 AJH1 AT1G51400 LCR68 AT2G23910 IAA20 AT2G22880
GO:0032268
regulation of cellular protein metabolic...
BP3.872e-06PSBY AT5G19940 MSP-1 PSAN APE2 IAA27 TROL PMI1 CYCP2;1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 FHY2 TCP10
GO:0042254
ribosome biogenesis
BP4.734e-06PSBY Lhca5 MSP-1 DIM1B AT5G22440 LHCB4.1 LHCA1 PTAC16 ATHD2A AT4G39880 HCF244 PSAL LHCB5 ATPD TROL PMI1 AtGRP4 AT3G13230 GAPA LHCB2 PSAH-1 AT3G16780 LHCB4.2 ATCYP38 CLP2 GAPA-2 PSAO AT1G64510 AT1G15250 OE23 CLPP6 AT2G40010
GO:0051246
regulation of protein metabolic process
BP5.112e-06PSBY AT5G19940 MSP-1 PSAN APE2 IAA27 TROL PMI1 CYCP2;1 AtRLP33 LHCB4.2 ATCYP38 CLP2 PR-5 BBX14 GAPA-2 PSAO CLPP6 PSAD-2 DSPTP1E AGL22 FHY2 TCP10
GO:0034470
ncRNA processing
BP5.574e-06PSBY Lhca5 MSP-1 DIM1B AT5G22440 LHCB4.1 LHCA1 PTAC16 ATHD2A HCF244 PSAL LHCB5 ATPD TROL PMI1 AtTRM11 AtGRP4 AT3G13230 GAPA LHCB2 PSAH-1 LHCB4.2 ATCYP38 CLP2 GAPA-2 PSAO OE23 CLPP6
GO:0010053
root epidermal cell differentiation
BP5.676e-06ATOPT3 ACL5 CAC2 AT5G62340 AT5G17820 CBB3 AT4G30320 AT4G26010 AT4G25790 RHS13 ATPRP1 RALFL27 RHS12 ATEXP7 AtGH9C1 ATEXP18 ADF11 FLA6 AT1G30870 LCR68 ATMLO15
GO:0022613
ribonucleoprotein complex biogenesis
BP5.793e-06PSBY Lhca5 MSP-1 DIM1B AT5G22440 LHCB4.1 LHCA1 PTAC16 ATHD2A AT4G39880 HCF244 PSAL LHCB5 ATPD TROL PMI1 AtGRP4 AT3G13230 GAPA LHCB2 PSAH-1 AT3G16780 LHCB4.2 ATCYP38 CLP2 GAPA-2 PSAO AT1G64510 AT1G15250 OE23 CLPP6 AT2G40010
GO:0009069
serine family amino acid metabolic proce...
BP7.328e-06PSBY AT5G19940 MSP-1 PSAN APE2 AST68 CAB4 MSRA4 ATSMO1-2 LHCB5 TROL LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 LIP1 LCR68
GO:0090627
plant epidermal cell differentiation
BP8.380e-06ATOPT3 ACL5 CAC2 AT5G62340 AT5G17820 CBB3 AT4G30320 AT4G26010 AT4G25790 RHS13 ATPRP1 RALFL27 RHS12 ATEXP7 AtGH9C1 ATEXP18 ADF11 FLA6 AT1G30870 LCR68 ATMLO15
GO:0010114
response to red light
BP1.457e-05LHCB4.1 LHCA1 PTAC16 HCF244 LHCB5 TROL GAPA LHCB2 LHCB4.2 ATFD2 OE23 PSBR FHY2
GO:0009314
response to radiation
BP1.652e-05ATOPT3 KNAT4 ACL5 CAC2 GATA23 MSP-1 GIL1 THI1 APE2 AT5G19150 ATFTSH6 SIG4 CBB3 LHCB4.1 GATA4 LHCA1 A11 AMP1 PTAC16 ATSEN1 HCF244 ENP ATFSD1 MSRA4 CRR31 LHCB5 AGY1 TROL GAPA AT3G14750 LHCB2 ADS3 AtRLP33 LHCB4.2 PBC2 ATFD2 PR-5 OE23 RPL10B AGL3 PSBR FHY2 NIP2 AJH1 AT1G51400 LCR68 AT2G23910 IAA20 AT2G22880
GO:0006818
hydrogen transport
BP2.228e-05THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 ATPD GAPA LHCB2 VHA-E2 LHCB4.2 ATFD2 OE23 PSBR
GO:0015992
proton transport
BP2.228e-05THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 ATPD GAPA LHCB2 VHA-E2 LHCB4.2 ATFD2 OE23 PSBR
GO:0022622
root system development
BP2.300e-05ATOPT3 ACL5 CAC2 GATA23 AT5G62340 ATPHB3 AT5G17820 NOXY2 CBB3 LAX1 AMP1 AT4G30320 AT4G26010 AT4G25790 RHS13 ATPRP1 RALFL27 RHS12 ATEXP7 AtGH9C1 ATEXP18 ADF11 FLA6 AIR3 AT1G30870 LCR68 IAA20 ATMLO15
GO:0048364
root development
BP2.300e-05ATOPT3 ACL5 CAC2 GATA23 AT5G62340 ATPHB3 AT5G17820 NOXY2 CBB3 LAX1 AMP1 AT4G30320 AT4G26010 AT4G25790 RHS13 ATPRP1 RALFL27 RHS12 ATEXP7 AtGH9C1 ATEXP18 ADF11 FLA6 AIR3 AT1G30870 LCR68 IAA20 ATMLO15
GO:1901607
alpha-amino acid biosynthetic process
BP2.788e-05PSBY AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN APE2 AST68 ATRPB13.6 CAB4 AT4G23590 ATSMO1-2 LHCB5 AT4G08310 TROL ATHMT-1 LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 ANAC042 LIP1 LCR68
GO:0009642
response to light intensity
BP3.540e-05MSP-1 APE2 ATFTSH6 LHCB4.1 LHCA1 ATFSD1 LHCB5 AGY1 GAPA LHCB2 ADS3 AtRLP33 LHCB4.2 ATFD2 OE23 PSBR FHY2 IAA20
GO:1901605
alpha-amino acid metabolic process
BP6.363e-05PSBY AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN APE2 AST68 ATRPB13.6 CAB4 MSRA4 AT4G23590 ATSMO1-2 LHCB5 AT4G08310 TROL HEME1 ATHMT-1 CARA ATHM4 THA2 LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 AOAT1 PSBR PSAG LHCA3 ANAC042 LIP1 LCR68
GO:0010015
root morphogenesis
BP6.506e-05ATOPT3 ACL5 CAC2 AT5G62340 AT5G17820 CBB3 AT4G30320 AT4G26010 AT4G25790 RHS13 ATPRP1 RALFL27 RHS12 ATEXP7 AtGH9C1 ATEXP18 ADF11 FLA6 AIR3 AT1G30870 LCR68 ATMLO15
GO:0044283
small molecule biosynthetic process
BP7.210e-05PSBY AT5G19940 AT1G57540 BCCP2 CAC2 MSP-1 AT5G65760 PSAN THI1 AT5G53920 APE2 AT5G10160 AST68 CBB3 AT5G05670 VTE5 ATRPB13.6 CAB4 AT4G31310 ATS2 MIOX4 AT4G23590 ATSMO1-2 LHCB5 ATPD AT4G08310 TROL HEME1 ATHMT-1 ADS3 ATHM4 LHCB4.2 ATBCA1 ATCYP38 PR-5 AT1G35420 ACS1 FTM1 AT1G06100 HYD1 PSAO PSAF OE23 CLPP6 AOAT1 FLA6 AtRIBA2 PSBR ATNAS3 PSAG AMI1 DHNS LHCA3 ANAC042 LIP1 LCR68
GO:0070838
divalent metal ion transport
BP7.616e-05AT5G19940 MSP-1 AST68 CAB4 ATZIP9 CRR31 PSAL PSBQ CCL ATZIP4 PSAO PSAD-2 PSAG ATZIP6
GO:0072511
divalent inorganic cation transport
BP8.527e-05AT5G19940 MSP-1 AST68 CAB4 ATZIP9 CRR31 PSAL PSBQ CCL ATZIP4 PSAO PSAD-2 PSAG ATZIP6
GO:0050896
response to stimulus
BP9.500e-05ATCYSA ATOPT3 AGP31 KNAT4 ACL5 AtFAR6 CAC2 GATA23 AT5G25475 ATBT4 MSP-1 XTH6 ATC/VIF2 LFY GIL1 TCH4 AT5G55620 ATOPT1 THI1 DIR1 AtRABA5a APE2 AtPP2-A7 AT5G44580 CML43 AT5G40810 ATPHB3 AT5G40510 AT5G19150 AT5G17820 ATFTSH6 SIG4 AT5G12930 NOXY2 AT5G10540 ATPGIP1 CBB3 AT5G05670 AT5G05400 MT2B AT5G02520 LHCB4.1 LECRKA4.3 GATA4 LHCA1 A11 AMP1 ATRPB13.6 OBP1 ALDH10A9 CAB4 PTAC16 BBX20 AT4G37560 ATSEN1 HCF244 AtCIB22 AT4G33560 ATZIP9 ENP AT4G31250 IAA27 AT4G28140 ANAC072 ISI1 AT4G26010 ATFSD1 MSRA4 CLT2 CRR31 IQD22 MSRB2 LHCB5 ATPD AT4G08310 RHS13 AGY1 TROL CYP87A2 AtIDD7 AT1G75230 AT3G13610 AtGRP4 ATPURC HEME1 GAPA AT3G19950 AT3G14750 LHCB2 CARA ADS3 ATHM4 AtRLP33 LHCB4.2 AT3G07480 PTF1 ATBCA1 ATCYP38 GAPC-2 AT1G02360 GLP4 PBC2 ATFD2 PR-5 ATL8 AtRAV2 AT1G73230 BBX14 AT1G80530 ATHVA22C ACS1 ATSAGT1 FTM1 AT1G06100 AT1G07440 HYD1 AT1G80130 AT1G73120 OE23 AT1G28680 AT1G75490 AT1G75590 AOAT1 ATTPS1 AIR3 ATPAP10 AT2G16365 anac036 RPL10B DSPTP1E AT2G36290 ABS2 AGL3 AGL22 PSBR FHY2 NIP2 U2A' AJH1 AT1G22885 AT2G17880 AT1G23130 AT1G30870 AT1G51400 ANAC042 AT2G20360 AtERF53 PR-1-LIKE AT2G24400 FIE2 LCR68 LCR69 AT2G39040 TCP10 AT2G23910 TIP4;1 AT2G19790 IAA20 AT2G22880 AtRTE1 ATMLO15 AT2G44065 ATZIP6 AT2G39980 EMB3113 ATWHY3
GO:0009628
response to abiotic stimulus
BP1.044e-04ATCYSA ATOPT3 KNAT4 ACL5 CAC2 GATA23 ATBT4 MSP-1 XTH6 ATC/VIF2 GIL1 TCH4 THI1 APE2 ATPHB3 AT5G19150 ATFTSH6 SIG4 ATPGIP1 CBB3 MT2B LHCB4.1 GATA4 LHCA1 A11 AMP1 ALDH10A9 CAB4 PTAC16 BBX20 ATSEN1 HCF244 AT4G33560 ENP ANAC072 ATFSD1 MSRA4 CRR31 LHCB5 ATPD AGY1 TROL AtGRP4 GAPA AT3G14750 LHCB2 ADS3 AtRLP33 LHCB4.2 ATBCA1 ATCYP38 GAPC-2 PBC2 ATFD2 PR-5 AT1G73230 AT1G80530 ATHVA22C FTM1 AT1G07440 OE23 AOAT1 AT2G16365 RPL10B ABS2 AGL3 AGL22 PSBR FHY2 NIP2 U2A' AJH1 AT1G51400 ANAC042 AT2G20360 AtERF53 FIE2 LCR68 AT2G23910 IAA20 AT2G22880 AT2G39980 EMB3113
GO:0009744
response to sucrose
BP1.351e-04LHCB4.1 LHCA1 A11 ATSEN1 ISI1 LHCB5 TROL GAPA LHCB2 LHCB4.2 ATFD2 ATL8 OE23 PSBR AT2G17880 AT2G23910
GO:1901700
response to oxygen-containing compound
BP1.380e-04ATCYSA AGP31 ATBT4 MSP-1 XTH6 LFY TCH4 AT5G55620 DIR1 ATPHB3 AT5G40510 AT5G17820 ATFTSH6 ATPGIP1 AT5G05400 LHCB4.1 LECRKA4.3 LHCA1 A11 OBP1 ALDH10A9 BBX20 ATSEN1 AT4G33560 AT4G28140 ANAC072 ISI1 AT4G26010 ATFSD1 IQD22 LHCB5 ATPD RHS13 TROL CYP87A2 AT3G13610 AtGRP4 GAPA AT3G19950 LHCB2 AtRLP33 LHCB4.2 PTF1 ATBCA1 ATCYP38 AT1G02360 GLP4 ATFD2 PR-5 ATL8 AtRAV2 BBX14 ATHVA22C ATSAGT1 FTM1 OE23 AT1G75490 AOAT1 ATTPS1 anac036 DSPTP1E AGL22 PSBR AT2G17880 AT1G51400 AtERF53 TCP10 AT2G23910
GO:0043269
regulation of ion transport
BP1.531e-04ATOPT1 THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 GAPA LHCB2 LHCB4.2 ATFD2 OE23 PSBR
GO:0034660
ncRNA metabolic process
BP1.597e-04PSBY Lhca5 MSP-1 DIM1B AT5G22440 LHCB4.1 LHCA1 PTAC16 ATHD2A HCF244 PSAL LHCB5 ATPD TROL PMI1 AtTRM11 AtGRP4 AT3G13230 GAPA LHCB2 PSAH-1 LHCB4.2 ATCYP38 CLP2 GAPA-2 PSAO OE23 CLPP6
GO:0034285
response to disaccharide
BP1.621e-04LHCB4.1 LHCA1 A11 ATSEN1 ISI1 LHCB5 TROL GAPA LHCB2 LHCB4.2 ATFD2 ATL8 OE23 PSBR AT2G17880 AT2G23910
GO:0051049
regulation of transport
BP1.625e-04ATOPT1 THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 GAPA LHCB2 LHCB4.2 GAPC-2 ATFD2 OE23 PSBR
GO:0048513
organ development
BP1.851e-04ATOPT3 AT4G15690 KNAT4 ACL5 CAC2 GATA23 AT5G25475 ATBT4 MSP-1 AT5G62340 LFY GIL1 ATPHB3 AT5G38760 AT5G17820 NOXY2 CBB3 AT5G05670 AT5G02520 LAX1 AMP1 AT4G33560 AT4G30320 ATS2 AT4G26010 AT4G25790 RHS13 AT2G33640 CYP78A5 ATPRP1 RALFL27 RHS12 PTF1 ATEXP7 PR-5 ATL8 BBX14 ACS1 AtGH9C1 ATEXP18 ADF11 TTA1 FLA6 AIR3 anac036 AT2G36350 AGL3 AGL22 AMI1 AJH1 AT1G30870 ANAC042 AT2G22610 LIP1 FIE2 LCR68 ORS1 TCP10 IAA20 ATMLO15
GO:0009767
photosynthetic electron transport chain
BP1.935e-04MSP-1 PSAN ATPD TROL ADS3 ATCYP38 ATFD2 GAPA-2 OE23 PSAG
GO:0030001
metal ion transport
BP2.268e-04AT4G15390 AT5G19940 MSP-1 AT5G40510 AT5G23830 AT5G17820 AST68 AT5G06740 AT5G05400 CAB4 ATZIP9 AT4G26010 CRR31 PSAL PSBQ RHS13 CYP87A2 CCL GLP4 ATZIP4 PSAO PSAD-2 AT2G36290 PSAG ATZIP6
GO:0016053
organic acid biosynthetic process
BP2.285e-04PSBY AT5G19940 AT1G57540 BCCP2 CAC2 MSP-1 AT5G65760 PSAN APE2 AT5G10160 AST68 ATRPB13.6 CAB4 ATS2 MIOX4 AT4G23590 ATSMO1-2 LHCB5 ATPD AT4G08310 TROL HEME1 ATHMT-1 ADS3 ATHM4 LHCB4.2 ATBCA1 ATCYP38 PR-5 AT1G35420 ACS1 FTM1 AT1G06100 PSAO PSAF OE23 CLPP6 AOAT1 PSBR ATNAS3 PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68
GO:0046394
carboxylic acid biosynthetic process
BP2.285e-04PSBY AT5G19940 AT1G57540 BCCP2 CAC2 MSP-1 AT5G65760 PSAN APE2 AT5G10160 AST68 ATRPB13.6 CAB4 ATS2 MIOX4 AT4G23590 ATSMO1-2 LHCB5 ATPD AT4G08310 TROL HEME1 ATHMT-1 ADS3 ATHM4 LHCB4.2 ATBCA1 ATCYP38 PR-5 AT1G35420 ACS1 FTM1 AT1G06100 PSAO PSAF OE23 CLPP6 AOAT1 PSBR ATNAS3 PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68
GO:0090558
plant epidermis development
BP2.312e-04ATOPT3 ACL5 CAC2 AT5G62340 ABIL4 AT5G17820 CBB3 PTAC16 AT4G30320 AT4G26010 AT4G25790 RHS13 AGY1 ATPRP1 RALFL27 CYCP2;1 RHS12 ATCYP38 ATEXP7 AT1G35420 AtGH9C1 ATEXP18 GAPA-2 ADF11 FLA6 AT1G30870 MEE65 LCR68 ATMLO15
GO:0015706
nitrate transport
BP2.459e-04AT5G40510 AT5G17820 ATNRT2.7 AT5G05400 AT4G26010 RHS13 CYP87A2 AT1G02360 GLP4 AtRAV2 ATSAGT1 ATOCT2
GO:0008652
cellular amino acid biosynthetic process
BP2.780e-04PSBY AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN APE2 AST68 ATRPB13.6 CAB4 AT4G23590 ATSMO1-2 LHCB5 AT4G08310 TROL ATHMT-1 LHCB4.2 AT1G35420 ACS1 PSAO PSAF OE23 CLPP6 AOAT1 PSBR PSAG LHCA3 ANAC042 LIP1 LCR68
GO:1901566
organonitrogen compound biosynthetic pro...
BP3.816e-04PSBY hemb2 AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN THI1 APE2 AST68 AT5G05670 ATRPB13.6 CAB4 PTAC16 ATHD2A AT4G39880 ATS2 AT4G23590 ATSMO1-2 LHCB5 ATPD AT4G08310 TROL ATPURC HEME1 ATHMT-1 CARA ADS3 ATHM4 AT3G16780 VHA-E2 LHCB4.2 ATCYP38 AT1G35420 ACS1 PSAO PSAF OE23 CLPP6 AOAT1 AtRIBA2 PSBR ATNAS3 PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68
GO:0042221
response to chemical
BP4.699e-04ATCYSA AGP31 AT5G25475 ATBT4 MSP-1 XTH6 LFY TCH4 AT5G55620 DIR1 CML43 AT5G40810 ATPHB3 AT5G40510 AT5G17820 ATFTSH6 AT5G12930 AT5G10540 ATPGIP1 AT5G05400 MT2B AT5G02520 LHCB4.1 LECRKA4.3 LHCA1 A11 ATRPB13.6 OBP1 ALDH10A9 BBX20 ATSEN1 AtCIB22 AT4G33560 ATZIP9 IAA27 AT4G28140 ANAC072 ISI1 AT4G26010 ATFSD1 MSRA4 CLT2 IQD22 LHCB5 ATPD RHS13 TROL CYP87A2 AT3G13610 AtGRP4 ATPURC HEME1 GAPA AT3G19950 LHCB2 AtRLP33 LHCB4.2 AT3G07480 PTF1 ATBCA1 ATCYP38 GAPC-2 AT1G02360 GLP4 PBC2 ATFD2 PR-5 ATL8 AtRAV2 BBX14 ATHVA22C ACS1 ATSAGT1 FTM1 AT1G07440 AT1G73120 OE23 AT1G75490 AT1G75590 AOAT1 ATTPS1 AIR3 anac036 DSPTP1E AGL22 PSBR FHY2 AJH1 AT2G17880 AT1G51400 ANAC042 AT2G20360 AtERF53 AT2G24400 TCP10 AT2G23910 TIP4;1 IAA20 AtRTE1 AT2G44065 EMB3113
GO:0030154
cell differentiation
BP4.984e-04ATOPT3 ACL5 CAC2 MSP-1 AT5G62340 LFY AT5G45700 ABIL4 cdc2cAt AT5G17820 CBB3 AT5G05670 AT4G30320 AT4G26010 AT4G25790 RHS13 AGY1 ATPRP1 RALFL27 RHS12 PTF1 ATEXP7 PR-5 BBX14 ACS1 AtGH9C1 ATEXP18 ADF11 HMGA TTA1 FLA6 AGL3 AGL22 ATNAS3 AMI1 AT1G30870 LIP1 LCR68 TCP10 AtMYB104 ATMLO15
GO:0000041
transition metal ion transport
BP5.541e-04AT4G15390 AT5G40510 AT5G23830 AT5G17820 AT5G06740 AT5G05400 ATZIP9 AT4G26010 RHS13 CYP87A2 GLP4 ATZIP4 AT2G36290 ATZIP6
GO:0030003
cellular cation homeostasis
BP5.778e-04ATOPT3 AT5G19940 MSP-1 AST68 CAB4 CRR31 PSAL PSBQ CCL PSAO PSAD-2 PSAG
GO:0009888
tissue development
BP5.971e-04ATOPT3 ACL5 CAC2 AT5G62340 LFY GIL1 ABIL4 AT5G17820 CBB3 AT5G05670 AMP1 PTAC16 AT4G33560 AT4G30320 AT4G26010 AT4G25790 RHS13 AGY1 CYP78A5 ATPRP1 RALFL27 CYCP2;1 RHS12 ATCYP38 ATEXP7 ATL8 AT1G35420 AtGH9C1 FTM1 ATEXP18 GAPA-2 ADF11 AT1G30515 TTA1 FLA6 AT2G36350 AGL3 AGL22 AT1G30870 MEE65 FIE2 LCR68 ATMLO15
GO:0009773
photosynthetic electron transport in pho...
BP6.049e-04PSAN ATPD TROL ATCYP38 ATFD2 GAPA-2 OE23 PSAG
GO:0006520
cellular amino acid metabolic process
BP6.218e-04PSBY IAGLU AT5G19940 AT1G57540 MSP-1 AT5G65760 PSAN APE2 AST68 ATRPB13.6 CAB4 MSRA4 AT4G23590 ATSMO1-2 LHCB5 AT4G08310 TROL HEME1 ATHMT-1 CARA ATHM4 THA2 LHCB4.2 AT1G35420 ACS1 ATSAGT1 PSAO PSAF OE23 CLPP6 AOAT1 PSBR PSAG LHCA3 ANAC042 LIP1 LCR68
GO:0009644
response to high light intensity
BP6.900e-04MSP-1 ATFTSH6 LHCB4.1 LHCA1 LHCB5 GAPA LHCB2 ADS3 AtRLP33 LHCB4.2 ATFD2 OE23 PSBR
GO:0000165
MAPK cascade
BP7.145e-04MSP-1 ATPGIP1 ATPD TROL AtRLP33 ATBCA1 ATCYP38 PR-5 BBX14 OE23 anac036 DSPTP1E AGL22 TCP10
GO:0023014
signal transduction by phosphorylation
BP7.145e-04MSP-1 ATPGIP1 ATPD TROL AtRLP33 ATBCA1 ATCYP38 PR-5 BBX14 OE23 anac036 DSPTP1E AGL22 TCP10
GO:0032879
regulation of localization
BP7.761e-04ATOPT1 THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 GAPA LHCB2 LHCB4.2 GAPC-2 ATFD2 OE23 PSBR
GO:0043623
cellular protein complex assembly
BP8.384e-04PSBY Lhca5 MSP-1 GIL1 ABIL4 AT5G40810 ATRPB13.6 HCF244 AtCIB22 PSAL ATPD TROL PMI1 GAPA PSAH-1 AT3G07480 ATCYP38 CLP2 PBC2 ATFD2 AT1G64355 GAPA-2 PSAO OE23 CLPP6 PSBR AJH1 AT2G20360 AtTic20-II AT2G44065
GO:0006873
cellular ion homeostasis
BP8.513e-04ATOPT3 AT5G19940 MSP-1 AST68 CAB4 CRR31 PSAL PSBQ CCL PSAO PSAD-2 PSAG
GO:0080167
response to karrikin
BP8.956e-04ATC/VIF2 A11 CAB4 BBX20 AT1G80530 AT1G07440 AT2G16365 ABS2 AT2G23910 AT2G39980
GO:0044765
single-organism transport
BP9.088e-04ATOPT3 AT4G15390 ACL5 AT5G19940 AT5G26200 MSP-1 AT5G61520 ATOPT1 THI1 AT5G48490 DIR1 AMK2 APE2 ATPHB3 AT5G40510 AT5G23830 AT5G18590 AT5G17820 ATNRT2.7 AST68 ATPGIP1 AT5G06740 AT5G05400 LHCB4.1 LAX1 AT3G58060 LHCA1 CAB4 ATZIP9 ENP AT4G26010 CLT2 CRR31 PSAL LHCB5 ATPD PSBQ RHS13 AGY1 TROL AT1G25530 CYP87A2 AT1G07025 AtTRM11 GAPA CCL LHCB2 VHA-E2 AtRLP33 LHCB4.2 ATBCA1 ATCYP38 GAPC-2 AT1G02360 GLP4 ATFD2 PR-5 AtRAV2 BBX14 ATZIP4 ATSAGT1 PSAO OE23 AT1G14780 AOAT1 PSAD-2 AT2G36290 AGL22 PSBR ATOCT2 ATNAS3 AtSTP14 PSAG AT1G22885 AT1G62510 AT1G62500 LTP LCR68 ATLTP1 TCP10 TIP4;1 AT2G25910 ATZIP6 EMB3113
GO:0009853
photorespiration
BP9.127e-04AT5G40810 ATRPB13.6 AtCIB22 PSBQ PAE2 ATHM4 AT3G10860 AT3G07480 AT1G79870 AOAT1 AT2G31490 AT2G20360 PMDH1 AT2G44065
GO:0015698
inorganic anion transport
BP9.127e-04ATOPT1 AT5G40510 AT5G17820 ATNRT2.7 AST68 AT5G05400 AT4G26010 RHS13 CYP87A2 AT1G02360 GLP4 AtRAV2 ATSAGT1 ATOCT2
GO:0010109
regulation of photosynthesis
BP1.041e-03MSP-1 AGY1 ADS3 ATCYP38 PSAG
GO:0055082
cellular chemical homeostasis
BP1.121e-03ATOPT3 AT5G19940 MSP-1 AST68 CAB4 CRR31 PSAL PSBQ CCL PSAO PSAD-2 PSAG
GO:0009862
systemic acquired resistance, salicylic ...
BP1.127e-03MSP-1 DIR1 ATPGIP1 AT4G33560 ATPD TROL AtRLP33 ATBCA1 ATCYP38 PR-5 BBX14 FTM1 OE23 AGL22 TCP10
GO:1902578
single-organism localization
BP1.178e-03ATOPT3 AT4G15390 ACL5 AT5G19940 AT5G26200 MSP-1 AT5G61520 ATOPT1 THI1 AT5G48490 DIR1 AMK2 APE2 ATPHB3 AT5G40510 AT5G23830 AT5G18590 AT5G17820 ATNRT2.7 AST68 ATPGIP1 AT5G06740 AT5G05400 LHCB4.1 LAX1 AT3G58060 LHCA1 CAB4 ATZIP9 ENP AT4G26010 CLT2 CRR31 PSAL LHCB5 ATPD PSBQ RHS13 AGY1 TROL AT1G25530 CYP87A2 AT1G07025 AtTRM11 GAPA CCL LHCB2 VHA-E2 AtRLP33 LHCB4.2 ATBCA1 ATCYP38 GAPC-2 AT1G02360 GLP4 ATFD2 PR-5 AtRAV2 BBX14 ATZIP4 ATSAGT1 PSAO OE23 AT1G14780 AOAT1 PSAD-2 AT2G36290 AGL22 PSBR ATOCT2 ATNAS3 AtSTP14 PSAG AT1G22885 AT1G62510 AT1G62500 LTP LCR68 ATLTP1 TCP10 TIP4;1 AT2G25910 ATZIP6 EMB3113
GO:0001101
response to acid chemical
BP1.186e-03ATCYSA AGP31 ATBT4 MSP-1 XTH6 LFY DIR1 AT5G40510 AT5G17820 ATPGIP1 AT5G05400 LECRKA4.3 OBP1 ALDH10A9 ATSEN1 AT4G33560 ANAC072 AT4G26010 ATFSD1 IQD22 ATPD RHS13 TROL CYP87A2 AtGRP4 LHCB2 AtRLP33 PTF1 ATBCA1 ATCYP38 AT1G02360 GLP4 PR-5 AtRAV2 BBX14 ATHVA22C ATSAGT1 FTM1 OE23 DSPTP1E AGL22 AT1G51400 AtERF53 TCP10
GO:0042548
regulation of photosynthesis, light reac...
BP1.296e-03MSP-1 ADS3 ATCYP38 PSAG
GO:0043467
regulation of generation of precursor me...
BP1.809e-03MSP-1 ADS3 ATCYP38 PSAG
GO:0015672
monovalent inorganic cation transport
BP1.838e-03ATOPT1 THI1 AMK2 LHCB4.1 LHCA1 CRR31 LHCB5 ATPD GAPA LHCB2 VHA-E2 LHCB4.2 ATFD2 OE23 PSBR
GO:0009825
multidimensional cell growth
BP1.959e-03ATOPT3 ACL5 CAC2 CBB3 ATEXP7 ATEXP18 LCR68
GO:0043436
oxoacid metabolic process
BP1.970e-03PSBY IAGLU AT5G19940 AT1G57540 AT5G17560 BCCP2 CAC2 MSP-1 AT5G65760 PSAN APE2 AT5G10540 AT5G10160 AST68 PGPS2 ATRPB13.6 CAB4 PTAC16 HCF244 ATS2 MIOX4 MSRA4 AT4G23590 ATSMO1-2 AT4G10750 LHCB5 ATPD AT4G08310 TROL HEME1 GAPA ICL ATHMT-1 CARA ADS3 PAE2 ATHM4 THA2 AT3G05730 ATNUDX26 LHCB4.2 PTF1 ATBCA1 ATCYP38 GAPC-2 PBC2 PR-5 AT1G35420 ACS1 ATSAGT1 FTM1 AT1G21440 AT1G06100 GAPA-2 PDH-E1 PSAO PSAF OE23 CLPP6 AOAT1 AIR3 AT1G04420 ABS2 PSBR ATNAS3 PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68 PMDH1
GO:0006082
organic acid metabolic process
BP2.014e-03PSBY IAGLU AT5G19940 AT1G57540 AT5G17560 BCCP2 CAC2 MSP-1 AT5G65760 PSAN APE2 AT5G10540 AT5G10160 AST68 PGPS2 ATRPB13.6 CAB4 PTAC16 HCF244 ATS2 MIOX4 MSRA4 AT4G23590 ATSMO1-2 AT4G10750 LHCB5 ATPD AT4G08310 TROL HEME1 GAPA ICL ATHMT-1 CARA ADS3 PAE2 ATHM4 THA2 AT3G05730 ATNUDX26 LHCB4.2 PTF1 ATBCA1 ATCYP38 GAPC-2 PBC2 PR-5 AT1G35420 ACS1 ATSAGT1 FTM1 AT1G21440 AT1G06100 GAPA-2 PDH-E1 PSAO PSAF OE23 CLPP6 AOAT1 AIR3 AT1G04420 ABS2 PSBR ATNAS3 PSAG AMI1 LHCA3 ANAC042 LIP1 LCR68 PMDH1
GO:0010167
response to nitrate
BP2.260e-03AT5G40510 AT5G17820 AT5G05400 AT4G26010 RHS13 CYP87A2 AT1G02360 GLP4 AtRAV2 ATSAGT1
GO:0010033
response to organic substance
BP2.283e-03AGP31 AT5G25475 ATBT4 MSP-1 XTH6 LFY TCH4 AT5G55620 DIR1 AT5G40810 ATPHB3 AT5G12930 ATPGIP1 AT5G02520 LHCB4.1 LECRKA4.3 LHCA1 A11 ATRPB13.6 OBP1 ALDH10A9 BBX20 ATSEN1 AtCIB22 AT4G33560 IAA27 AT4G28140 ANAC072 ISI1 IQD22 LHCB5 ATPD TROL AT3G13610 ATPURC GAPA AT3G19950 LHCB2 AtRLP33 LHCB4.2 AT3G07480 PTF1 ATBCA1 ATCYP38 AT1G02360 PBC2 ATFD2 PR-5 ATL8 AtRAV2 BBX14 ATHVA22C FTM1 OE23 AT1G75490 AT1G75590 AOAT1 ATTPS1 AIR3 anac036 DSPTP1E AGL22 PSBR AJH1 AT2G17880 ANAC042 AT2G20360 AT2G24400 TCP10 AT2G23910 TIP4;1 IAA20 AtRTE1 AT2G44065
GO:0010310
regulation of hydrogen peroxide metaboli...
BP2.329e-03MSP-1 AT4G33560 ATPD TROL AtRLP33 ATBCA1 ATCYP38 PR-5 BBX14 FTM1 OE23 AGL22 TCP10
GO:1901698
response to nitrogen compound
BP2.438e-03AT5G25475 MSP-1 TCH4 AT5G55620 ATPHB3 AT5G40510 AT5G17820 AT5G05400 AT5G02520 BBX20 AT4G28140 AT4G26010 ATPD RHS13 TROL CYP87A2 AT3G19950 ATBCA1 ATCYP38 AT1G02360 GLP4 PR-5 AtRAV2 ATSAGT1 OE23 AT1G75490 anac036
GO:0043094
cellular metabolic compound salvage
BP2.554e-03AT5G40810 ATRPB13.6 AtCIB22 PSBQ PAE2 ATHM4 AT3G10860 AT3G07480 AT1G79870 AOAT1 AT2G31490 AT2G20360 PMDH1 AT2G44065
GO:0051234
establishment of localization
BP2.981e-03ATOPT3 AT4G15390 ACL5 AT5G19940 AT5G26200 MSP-1 AT5G61520 ATOPT1 THI1 AT5G48490 DIR1 AMK2 AtRABA5a APE2 ATPHB3 AT5G40510 AT5G24170 AT5G23830 AT5G18590 AT5G17820 ATNRT2.7 AST68 ATPGIP1 AT5G06740 AT5G05400 LHCB4.1 LAX1 AT3G58060 LHCA1 CAB4 PTAC16 ATZIP9 ENP AT4G26010 CLT2 CRR31 PSAL LHCB5 ATPD PSBQ RHS13 AGY1 TROL AT1G25530 CYP87A2 AT1G07025 PMI1 AtTRM11 GAPA CCL LHCB2 VHA-E2 AtRLP33 LHCB4.2 ATBCA1 ATCYP38 GAPC-2 AT1G02360 GLP4 CLP2 ATFD2 PR-5 AtRAV2 BBX14 ATZIP4 ATSAGT1 PSAO OE23 CLPP6 AT1G14780 AOAT1 AT2G18180 PSAD-2 AT2G36290 AGL22 PSBR ATOCT2 ATNAS3 AtSTP14 PSAG AT1G22885 AT1G62510 AT1G62500 LTP LCR68 ATLTP1 TCP10 TIP4;1 AT2G25910 AT2G19790 ATZIP6 EMB3113