4.0:Analysis result:Information of module
phyABDE 4-day dark- 2 hours Rc50

    Top 100 most enriched GO terms
GOID/TermOntologyp-valueGenes
GO:0022900
electron transport chain
BP4.160e-03NAD4 PETG ABI2 COX1
GO:0009736
cytokinin-activated signaling pathway
BP6.805e-03APRR8 ARR4 ARR16
GO:0015979
photosynthesis
BP7.089e-03NAD4 PETG RPL20 ACCD ATPF ABI2
GO:0071368
cellular response to cytokinin stimulus
BP7.724e-03APRR8 ARR4 ARR16
GO:0000165
MAPK cascade
BP8.276e-03PHS1 ATWRKY38 AT1G74360 RPK1 AT1G31130
GO:0006354
DNA-templated transcription, elongation
BP8.276e-03PETG RPL20 ACCD ATPF AT2G44065
GO:0023014
signal transduction by phosphorylation
BP8.276e-03PHS1 ATWRKY38 AT1G74360 RPK1 AT1G31130
GO:0007167
enzyme linked receptor protein signaling...
BP1.576e-02PRK1 AT5G24100 AT4G31250 AT1G74360
GO:0007169
transmembrane receptor protein tyrosine ...
BP1.576e-02PRK1 AT5G24100 AT4G31250 AT1G74360
GO:0006091
generation of precursor metabolites and ...
BP2.149e-02NAD4 PETG RPL20 ACCD ATPF ABI2 ATCESA3 COX1
GO:0019684
photosynthesis, light reaction
BP2.364e-02PETG ACCD ATPF ABI2
GO:0048585
negative regulation of response to stimu...
BP2.480e-02ABI2 PHS1 ATWRKY38 ATDET1 AT1G74360 RPK1
GO:0007166
cell surface receptor signaling pathway
BP2.493e-02PRK1 AT5G24100 AT4G31250 AT1G74360
GO:0009767
photosynthetic electron transport chain
BP2.888e-02PETG ABI2
GO:0019693
ribose phosphate metabolic process
BP2.895e-02NAD4 ATPF AtNUDT11 PGL5 AT4G20320
GO:0007623
circadian rhythm
BP2.905e-02GATA12 APRR8 ARR4 ARR16
GO:0048511
rhythmic process
BP2.905e-02GATA12 APRR8 ARR4 ARR16
GO:0043069
negative regulation of programmed cell d...
BP3.050e-02ATRBOHD ATWRKY38 AT1G74360 RPK1
GO:0016485
protein processing
BP3.262e-02ATPREP2 AT1G52600
GO:0006796
phosphate-containing compound metabolic ...
BP3.266e-02NAD4 ATPF AT2G40860 PRK1 Mik ABI2 AtNUDT11 PGL5 AT5G24100 PHS1 ATWRKY38 AT4G31250 AT4G20320 AT4G10390 AT4G05070 AT1G74360 RPK1 AT1G21590 AT1G01230 ARR4 AT1G31130 eIFiso4G2
GO:0060548
negative regulation of cell death
BP3.513e-02ATRBOHD ATWRKY38 AT1G74360 RPK1
GO:0005985
sucrose metabolic process
BP3.654e-02ATSPS2F RS5
GO:0009735
response to cytokinin
BP3.915e-02APRR8 ARR4 ARR16
GO:0006793
phosphorus metabolic process
BP3.939e-02NAD4 ATPF AT2G40860 PRK1 Mik ABI2 AtNUDT11 PGL5 AT5G24100 PHS1 ATWRKY38 AT4G31250 AT4G20320 AT4G10390 AT4G05070 AT1G74360 RPK1 AT1G21590 AT1G01230 ARR4 AT1G31130 eIFiso4G2
GO:0006753
nucleoside phosphate metabolic process
BP4.487e-02NAD4 ATPF AtNUDT11 PGL5 AT4G20320 eIFiso4G2
GO:0009117
nucleotide metabolic process
BP4.487e-02NAD4 ATPF AtNUDT11 PGL5 AT4G20320 eIFiso4G2
GO:0001933
negative regulation of protein phosphory...
BP4.489e-02ABI2 PHS1
GO:0006469
negative regulation of protein kinase ac...
BP4.489e-02ABI2 PHS1
GO:0033673
negative regulation of kinase activity
BP4.489e-02ABI2 PHS1
GO:0042326
negative regulation of phosphorylation
BP4.489e-02ABI2 PHS1
GO:0051348
negative regulation of transferase activ...
BP4.489e-02ABI2 PHS1
GO:0009259
ribonucleotide metabolic process
BP4.743e-02NAD4 ATPF AtNUDT11 AT4G20320
GO:0010563
negative regulation of phosphorus metabo...
BP4.930e-02ABI2 PHS1
GO:0042744
hydrogen peroxide catabolic process
BP4.930e-02ATRBOHD AT5G07800
GO:0045936
negative regulation of phosphate metabol...
BP4.930e-02ABI2 PHS1
GO:0031400
negative regulation of protein modificat...
BP5.387e-02ABI2 PHS1
GO:0009750
response to fructose
BP5.462e-02ATGLN1;1 ATCESA3 AT4G10910
GO:0000160
phosphorelay signal transduction system
BP5.964e-02APRR8 RPK1 ARR4 ARR16
GO:0022904
respiratory electron transport chain
BP6.341e-02NAD4 COX1
GO:0035556
intracellular signal transduction
BP6.820e-02AtHsp90.2 PHS1 ATWRKY38 APRR8 AT1G74360 RPK1 ARR4 AT1G31130 ARR16
GO:0009620
response to fungus
BP6.977e-02ATRBOHD ATWRKY38 AT4G10390 AT1G74360 RPK1 AtTLP7 AT1G21590
GO:0019637
organophosphate metabolic process
BP7.061e-02NAD4 ATPF Mik AtNUDT11 PGL5 AT4G20320 AT4G05070 AT1G01230 eIFiso4G2
GO:0009165
nucleotide biosynthetic process
BP7.097e-02ATPF AtNUDT11 AT4G20320 eIFiso4G2
GO:1901293
nucleoside phosphate biosynthetic proces...
BP7.097e-02ATPF AtNUDT11 AT4G20320 eIFiso4G2
GO:0055086
nucleobase-containing small molecule met...
BP7.126e-02NAD4 ATPF AtNUDT11 PGL5 AT4G20320 eIFiso4G2
GO:0009746
response to hexose
BP7.579e-02ATGLN1;1 ATCESA3 AT4G10910
GO:0019220
regulation of phosphate metabolic proces...
BP7.579e-02ABI2 PHS1 ATWRKY38
GO:0051174
regulation of phosphorus metabolic proce...
BP7.579e-02ABI2 PHS1 ATWRKY38
GO:0090407
organophosphate biosynthetic process
BP7.887e-02ATPF Mik AtNUDT11 AT4G20320 AT4G05070 AT1G01230 eIFiso4G2
GO:0006470
protein dephosphorylation
BP7.907e-02ABI2 PHS1 ATWRKY38
GO:0009150
purine ribonucleotide metabolic process
BP7.907e-02NAD4 ATPF AtNUDT11
GO:0034284
response to monosaccharide
BP7.907e-02ATGLN1;1 ATCESA3 AT4G10910
GO:0051246
regulation of protein metabolic process
BP8.078e-02ABI2 PHS1 ATWRKY38 ATRPN1A
GO:0046128
purine ribonucleoside metabolic process
BP8.242e-02NAD4 ATPF AtNUDT11
GO:0009968
negative regulation of signal transducti...
BP8.403e-02ABI2 PHS1
GO:0010648
negative regulation of cell communicatio...
BP8.403e-02ABI2 PHS1
GO:0023057
negative regulation of signaling
BP8.403e-02ABI2 PHS1
GO:0042278
purine nucleoside metabolic process
BP8.582e-02NAD4 ATPF AtNUDT11
GO:0009595
detection of biotic stimulus
BP8.946e-02ATWRKY38 AT1G74360
GO:0043549
regulation of kinase activity
BP8.946e-02ABI2 PHS1
GO:0045859
regulation of protein kinase activity
BP8.946e-02ABI2 PHS1
GO:0051338
regulation of transferase activity
BP8.946e-02ABI2 PHS1
GO:0006163
purine nucleotide metabolic process
BP9.280e-02NAD4 ATPF AtNUDT11
GO:0031399
regulation of protein modification proce...
BP9.280e-02ABI2 PHS1 ATWRKY38
GO:0006412
translation
BP9.295e-02RPL20 NCBP AT5G03850 AT2G21580 eIFiso4G2 AT2G44065
GO:0043067
regulation of programmed cell death
BP9.320e-02ATRBOHD ATWRKY38 AT1G74360 RPK1 ARR4
GO:0016310
phosphorylation
BP9.460e-02NAD4 AT2G40860 PRK1 ABI2 AT5G24100 PHS1 ATWRKY38 AT4G31250 AT4G10390 AT1G74360 RPK1 AT1G21590 ARR4 AT1G31130
GO:0006323
DNA packaging
BP1.006e-01AT3G57060 HTB11
GO:0032269
negative regulation of cellular protein ...
BP1.006e-01ABI2 PHS1
GO:0051248
negative regulation of protein metabolic...
BP1.006e-01ABI2 PHS1
GO:0009414
response to water deprivation
BP1.008e-01ATDI21 ABI2 AtHsp90.2 RS5 ANAC072 RPK1 ATCAMBP25
GO:0010467
gene expression
BP1.022e-01PETG RPL20 ACCD ATPF DEAR3 GATA12 AtHsp90.2 PHS1 ATWRKY38 NCBP AT5G07160 DPA4 AT5G03850 ATOFP1 MYB77 AT4G31615 ANAC072 MOS1 AT4G02610 APRR8 ARF6 AT-HSFC1 AtTLP7 ARR4 AT2G22100 AT2G21580 NERD ARR16 eIFiso4G2 AT2G44065
GO:0010941
regulation of cell death
BP1.048e-01ATRBOHD ATWRKY38 AT1G74360 RPK1 ARR4
GO:0009814
defense response, incompatible interacti...
BP1.050e-01AtHsp90.2 ATWRKY38 AT1G74360 RPK1 AT1G52600 AT1G31130
GO:0001932
regulation of protein phosphorylation
BP1.063e-01ABI2 PHS1
GO:0009119
ribonucleoside metabolic process
BP1.074e-01NAD4 ATPF AtNUDT11
GO:0016311
dephosphorylation
BP1.074e-01ABI2 PHS1 ATWRKY38
GO:0045333
cellular respiration
BP1.074e-01NAD4 ATPF COX1
GO:0048767
root hair elongation
BP1.112e-01CESA6 ATCESA3 AT1G31130
GO:0009825
multidimensional cell growth
BP1.122e-01CESA6 ATCESA3
GO:0042325
regulation of phosphorylation
BP1.122e-01ABI2 PHS1
GO:0009415
response to water
BP1.139e-01ATDI21 ABI2 AtHsp90.2 RS5 ANAC072 RPK1 ATCAMBP25
GO:0042743
hydrogen peroxide metabolic process
BP1.169e-01ATRBOHD ATWRKY38 AT5G07800 AT1G74360
GO:0010118
stomatal movement
BP1.180e-01AtHsp90.2 PHS1
GO:0043473
pigmentation
BP1.180e-01CESA6 ATCESA3
GO:0043476
pigment accumulation
BP1.180e-01CESA6 ATCESA3
GO:0043478
pigment accumulation in response to UV l...
BP1.180e-01CESA6 ATCESA3
GO:0043479
pigment accumulation in tissues in respo...
BP1.180e-01CESA6 ATCESA3
GO:0043480
pigment accumulation in tissues
BP1.180e-01CESA6 ATCESA3
GO:0043481
anthocyanin accumulation in tissues in r...
BP1.180e-01CESA6 ATCESA3
GO:0080147
root hair cell development
BP1.190e-01CESA6 ATCESA3 AT1G31130
GO:0015980
energy derivation by oxidation of organi...
BP1.229e-01NAD4 ATPF COX1
GO:0072521
purine-containing compound metabolic pro...
BP1.229e-01NAD4 ATPF AtNUDT11
GO:0042451
purine nucleoside biosynthetic process
BP1.240e-01ATPF AtNUDT11
GO:0046129
purine ribonucleoside biosynthetic proce...
BP1.240e-01ATPF AtNUDT11
GO:0035966
response to topologically incorrect prot...
BP1.273e-01AT5G07160 AT1G74360 RPK1 ATRPN1A AT2G44065
GO:0009152
purine ribonucleotide biosynthetic proce...
BP1.300e-01ATPF AtNUDT11
GO:0009163
nucleoside biosynthetic process
BP1.300e-01ATPF AtNUDT11
GO:0042455
ribonucleoside biosynthetic process
BP1.300e-01ATPF AtNUDT11
GO:0071103
DNA conformation change
BP1.300e-01AT3G57060 HTB11