GOID	TERM	ONTOLOGY	pValue	Genes
GO:0042023	DNA endoreduplication	BP	0.000594070250827836	ICU2//ASK2//SIM//APC8//CYCD3//CCS52A1//CVP1//LGO//ATS9//ICK1
GO:0044786	cell cycle DNA replication	BP	0.000651588069581228	ICU2//ASK2//SIM//APC8//CYCD3//CCS52A1//CVP1//LGO//ATS9//ICK1
GO:0051052	regulation of DNA metabolic process	BP	0.00151383702618791	AT5G04320//ICU2//APC8//CYCD3//CCS52A1//CVP1//AT3G23740//AT3G13226//RDM1//LGO//AT1G10780//ICK1
GO:0032875	regulation of DNA endoreduplication	BP	0.00211296741550448	APC8//CCS52A1//CVP1//LGO
GO:0090329	regulation of DNA-dependent DNA replicat...	BP	0.00264541414082378	APC8//CCS52A1//CVP1//LGO
GO:0006275	regulation of DNA replication	BP	0.00318858903395416	ICU2//APC8//CYCD3//CCS52A1//CVP1//AT3G23740//LGO//AT1G10780//ICK1
GO:0035821	modification of morphology or physiology...	BP	0.00492881781606263	ATERDJ3B//ATTIF3K1//ATRH8//DDL//AT3G03040//AT1G52310//AtSDF2//AT2G03280
GO:0044003	modification by symbiont of host morphol...	BP	0.00492881781606263	ATERDJ3B//ATTIF3K1//ATRH8//DDL//AT3G03040//AT1G52310//AtSDF2//AT2G03280
GO:0051817	modification of morphology or physiology...	BP	0.00492881781606263	ATERDJ3B//ATTIF3K1//ATRH8//DDL//AT3G03040//AT1G52310//AtSDF2//AT2G03280
GO:0010564	regulation of cell cycle process	BP	0.00600852165386397	PRL1//ICU2//SIM//APC8//CYCD3//CCS52A1//CVP1//LGO//AT1G10780
GO:1901699	cellular response to nitrogen compound	BP	0.00635232464873368	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//RDM1//AT1G52310//AT2G05830//AT2G03280//AtTHO6
GO:0006396	RNA processing	BP	0.00657000724876827	U1A//PRL1//AT4G15820//AT5G04320//AT5G65760//mtACP3//AT5G15390//ATTIF3K1//At-RS31//At-SCL30//AtSDIR1//DRB3//DDL//RDM1//AT1G52310//AT1G73820//SR45a//ATORC4//PAC//PTB3//AT2G05830//AT2G03280//AtTHO6
GO:0051701	interaction with host	BP	0.00712932535567626	ATERDJ3B//ATTIF3K1//ATRH8//DDL//AT3G03040//AT1G52310//AtSDF2//AT2G03280
GO:0031050	dsRNA fragmentation	BP	0.00728469609000519	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//RDM1//AT1G52310//AT2G03280//AtTHO6
GO:0043331	response to dsRNA	BP	0.00728469609000519	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//RDM1//AT1G52310//AT2G03280//AtTHO6
GO:0070918	production of small RNA involved in gene...	BP	0.00728469609000519	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//RDM1//AT1G52310//AT2G03280//AtTHO6
GO:0071359	cellular response to dsRNA	BP	0.00728469609000519	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//RDM1//AT1G52310//AT2G03280//AtTHO6
GO:0009057	macromolecule catabolic process	BP	0.00846000343742889	AT5G61540//ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//ACT12//UBP27//CBNAC//AT4G32470//AT4G31430//HAE//CCS52A1//AT4G10070//AT4G05460//AMSH1//ATATE2//DDL//ATS9//ATPEX2//ACO3//APG9//ATPHB2//ATCSN2//AT2G41020
GO:0044265	cellular macromolecule catabolic process	BP	0.00954663260234964	AT5G61540//ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//ACT12//UBP27//CBNAC//AT4G32470//AT4G31430//CCS52A1//AT4G10070//AT4G05460//AMSH1//ATATE2//DDL//ATS9//ATPEX2//ACO3//APG9//ATPHB2//AT2G41020
GO:0044403	symbiosis, encompassing mutualism throug...	BP	0.010001078640966	ATERDJ3B//ATTIF3K1//ATRH8//DDL//AT3G03040//AT1G52310//AtSDF2//AT2G03280
GO:0044419	interspecies interaction between organis...	BP	0.0106657117733574	ATERDJ3B//ATTIF3K1//ATRH8//DDL//AT3G03040//AT1G52310//AtSDF2//AT2G03280
GO:0009845	seed germination	BP	0.0122136812597997	PRL1//ARR10//SLY1//ATATE2//AtLIG6//DDL//ATPAP15//AT1G56350//ADAP//ARR8
GO:0006511	ubiquitin-dependent protein catabolic pr...	BP	0.0123329352858529	ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//UBP27//AT4G32470//CCS52A1//AT4G05460//AMSH1//ATATE2//ATS9//ACO3//APG9//ATPHB2
GO:0048584	positive regulation of response to stimu...	BP	0.0128043896262376	PRL1//ATERDJ3B//AtSDIR1//SLY1//AtSDF2
GO:0019941	modification-dependent protein catabolic...	BP	0.0141322676289059	ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//UBP27//AT4G32470//CCS52A1//AT4G05460//AMSH1//ATATE2//ATS9//ACO3//APG9//ATPHB2
GO:0043632	modification-dependent macromolecule cat...	BP	0.0141322676289059	ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//UBP27//AT4G32470//CCS52A1//AT4G05460//AMSH1//ATATE2//ATS9//ACO3//APG9//ATPHB2
GO:0090351	seedling development	BP	0.0148727382576417	PRL1//ARR10//SLY1//ATATE2//AtLIG6//DDL//ATPAP15//AT1G56350//ADAP//ARR8
GO:0006260	DNA replication	BP	0.0166076821010174	ICU2//ASK2//SIM//APC8//CYCD3//CCS52A1//CVP1//AtLIG6//AT3G23740//LGO//ATS9//ATORC4//AT1G10780//ICK1
GO:0010101	post-embryonic root morphogenesis	BP	0.0172653126817228	HAE//AIR3//AtAUX1//ICK1
GO:0010102	lateral root morphogenesis	BP	0.0172653126817228	HAE//AIR3//AtAUX1//ICK1
GO:0009066	aspartate family amino acid metabolic pr...	BP	0.017874056041012	AT4G15820//AT5G65760//AT5G61540//AtSDIR1//AGD2//AtCGS1//ASP4//AT1G14810//AT2G05830
GO:0045089	positive regulation of innate immune res...	BP	0.0180553958198713	PRL1//ATERDJ3B//AtSDF2
GO:0010267	production of ta-siRNAs involved in RNA ...	BP	0.0189553841879739	mtACP3//ATTIF3K1//DRB3//DDL//AT1G52310//AT2G03280//AtTHO6
GO:0030422	production of siRNA involved in RNA inte...	BP	0.0192230925306199	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//AT1G52310//AT2G03280//AtTHO6
GO:0035195	gene silencing by miRNA	BP	0.0192230925306199	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//AT1G52310//HYD1//AT2G03280
GO:0006694	steroid biosynthetic process	BP	0.0199728713897782	ROT3//BKI1//SIM//SIR//CVP1//AT3G24040//LAG1//HYD1//HMG2//WAVH1//ATCB5-B
GO:0080090	regulation of primary metabolic process	BP	0.0206030310385231	bHLH104//PRL1//AT5G04320//ICU2//AT5G65320//AtMYB103//AT-HSFA9//AT5G51910//AT5G44080//BKI1//AT5G13240//PAS2//AT5G06770//SIM//AT5G02850//ATTIF3K1//At-RS31//AtMYB45//APC8//AT4G39780//AtMORC1//CBNAC//CYCD3//ATTIF3K1//IAA29//ARR10//AT4G31270//VEL1//ANAC073//ISI1//CCS52A1//AT4G12010//CVP1//ATATE2//DDL//AT3G23740//GATA17//AT3G13226//AT3G21810//AT3G26850//RDM1//LGO//PAP2//AT1G52310//AT1G69580//SR45a//AtMYB117//AT1G21060//ADAP//AT1G77840//ATORC4//AT1G10780//AT1G36060//PTB3//AT1G10120//ARR8//MYBC1//ICK1//AT2G37650
GO:0010608	posttranscriptional regulation of gene e...	BP	0.0207069514808599	mtACP3//ATTIF3K1//At-RS31//ATTIF3K1//DRB3//DDL//AT1G52310//HYD1//AT1G77840//PTB3//AT2G03280//AtTHO6
GO:0002684	positive regulation of immune system pro...	BP	0.0211373921556807	PRL1//ATERDJ3B//AtSDF2
GO:0031349	positive regulation of defense response	BP	0.0211373921556807	PRL1//ATERDJ3B//AtSDF2
GO:0050778	positive regulation of immune response	BP	0.0211373921556807	PRL1//ATERDJ3B//AtSDF2
GO:0000302	response to reactive oxygen species	BP	0.0215074486734393	AT5G37670//ATP5//AT5G02480//ATERDJ3B//ATCCS//AT2G43630//ATS9//AT1G14200//ACO3//AtSDF2//AT2G05830//AT2G44660
GO:0006914	autophagy	BP	0.023836913225534	AT5G10650//AT5G57910//AT1G72890//APG9
GO:0060255	regulation of macromolecule metabolic pr...	BP	0.02550574455366	bHLH104//PRL1//AT5G04320//ICU2//AT5G65320//AtMYB103//AT-HSFA9//AT5G51910//mtACP3//AT5G44080//AT5G13240//PAS2//AT5G06770//SIM//AT5G02850//ATTIF3K1//At-RS31//AtMYB45//APC8//AT4G39780//AtMORC1//CBNAC//CYCD3//ATTIF3K1//IAA29//AT4G31270//VEL1//HAE//ANAC073//CCS52A1//CVP1//DRB3//DDL//AT3G23740//GATA17//AT3G13226//AT3G21810//AT3G26850//RDM1//LGO//AT1G52310//AT1G69580//SR45a//HYD1//AtMYB117//AT1G21060//ADAP//AT1G77840//ATORC4//AT1G10780//AT1G36060//PTB3//AT1G10120//ARR8//AT2G03280//MYBC1//ICK1//AT2G37650//AtTHO6
GO:0009733	response to auxin	BP	0.0268001357432792	AT5G63190//AT4G38860//AT4G34760//IAA29//AGC2-4//AT3G09980//SAUR28//AT1G75590//ACO3//AIR3//GH3.9//AtAUX1
GO:0035194	posttranscriptional gene silencing by RN...	BP	0.0273267832410685	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//AT1G52310//HYD1//AT2G03280//AtTHO6
GO:0051607	defense response to virus	BP	0.0289449546767295	mtACP3//ATTIF3K1//DRB3//DDL//AT3G03040//AT1G52310//AGO2//AT2G03280
GO:0046165	alcohol biosynthetic process	BP	0.0292672106489303	ROT3//BKI1//SIM//SIR//AT4G31310//AT4G10070//CVP1//AT3G24040//LAG1//HYD1//HMG2//WAVH1//AtITPK4//ATCB5-B
GO:0016441	posttranscriptional gene silencing	BP	0.0298308204917173	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//AT1G52310//HYD1//AT2G03280//AtTHO6
GO:0022402	cell cycle process	BP	0.0310311671620609	PRL1//ICU2//VIP4//AT5G55830//ASK2//AT5G11480//SIM//APC8//POR//CYCD3//CCS52A1//CVP1//ATVPS9A//LGO//ATMYA1//ATS9//ATORC4//AT1G10780//AT2G01710//ICK1
GO:0044770	cell cycle phase transition	BP	0.0320845632399764	ICU2//APC8//CYCD3//AT1G10780//ICK1
GO:0044772	mitotic cell cycle phase transition	BP	0.0320845632399764	ICU2//APC8//CYCD3//AT1G10780//ICK1
GO:0030163	protein catabolic process	BP	0.033278417811013	AT5G61540//ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//ACT12//UBP27//AT4G32470//CCS52A1//AT4G05460//AMSH1//ATATE2//ATS9//ACO3//APG9//ATPHB2//ATCSN2
GO:0019222	regulation of metabolic process	BP	0.0336577043060156	bHLH104//PRL1//AT5G04320//ICU2//AT5G65320//AtMYB103//AT-HSFA9//AT5G51910//mtACP3//AT5G44080//BKI1//AT5G13240//PAS2//AT5G06770//SIM//AT5G02850//ATTIF3K1//At-RS31//AtMYB45//APC8//AT4G39780//AtMORC1//CBNAC//CYCD3//ATTIF3K1//IAA29//ARR10//AT4G31270//VEL1//HAE//ANAC073//ISI1//CCS52A1//AT4G12010//CVP1//ATATE2//DRB3//DDL//AT3G23740//GATA17//AT3G13226//AT3G21810//AT3G26850//RDM1//LGO//PAP2//AT1G52310//AT1G69580//SR45a//HYD1//AtMYB117//AT1G21060//ADAP//AT1G77840//ATORC4//UREF//AT1G10780//AT1G36060//AIR3//PTB3//AT1G10120//AT2G05830//ARR8//AT2G03280//MYBC1//ICK1//AT2G37650//AtTHO6
GO:0008202	steroid metabolic process	BP	0.0366219572051347	ROT3//BKI1//SIM//SIR//CVP1//AT3G24040//LAG1//HYD1//HMG2//WAVH1//ATCB5-B
GO:0035196	production of miRNAs involved in gene si...	BP	0.0387296834898159	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//AT1G52310//AT2G03280
GO:0006413	translational initiation	BP	0.0410018999153483	ATTIF3K1//AT1G49015//AT1G77840//AT2G05830
GO:0009065	glutamine family amino acid catabolic pr...	BP	0.0424387005584785	AT5G61540//ASP4
GO:0009085	lysine biosynthetic process	BP	0.0424387005584785	AGD2//AT1G14810
GO:0009089	lysine biosynthetic process via diaminop...	BP	0.0424387005584785	AGD2//AT1G14810
GO:0046451	diaminopimelate metabolic process	BP	0.0424387005584785	AGD2//AT1G14810
GO:0006259	DNA metabolic process	BP	0.0438482216490751	AT5G04320//ICU2//ASK2//SIM//AtSDIR1//MMZ4//APC8//CYCD3//CCS52A1//CVP1//AtLIG6//DDL//AT3G23740//AT3G13226//RDM1//LGO//AT3G09250//AT1G12400//AT1G19480//ATS9//ATORC4//AT1G10780//ICK1//AtTHO6
GO:0051603	proteolysis involved in cellular protein...	BP	0.0443022561003207	ASK2//AT5G37930//ATP5//AT5G01720//AtSDIR1//APC8//ACT12//UBP27//AT4G32470//CCS52A1//AT4G05460//AMSH1//ATATE2//ATS9//ACO3//APG9//ATPHB2
GO:0010029	regulation of seed germination	BP	0.0443956345155551	ARR10//ATATE2//ADAP//ARR8
GO:1900140	regulation of seedling development	BP	0.0443956345155551	ARR10//ATATE2//ADAP//ARR8
GO:0048528	post-embryonic root development	BP	0.044628820416669	WPP1//HAE//ATVPS9A//AIR3//AtAUX1//ICK1
GO:0006397	mRNA processing	BP	0.0446995488621704	U1A//At-RS31//At-SCL30//DDL//AT1G73820//PAC//PTB3
GO:0016132	brassinosteroid biosynthetic process	BP	0.0446995488621704	ROT3//BKI1//SIM//CVP1//AT3G24040//HYD1//WAVH1
GO:0009644	response to high light intensity	BP	0.0447718753588148	AT5G37670//AT5G02480//ATERDJ3B//AT2G43630//ATS9//SR45a//AT1G14200//AtSDF2//AT2G44660
GO:0016129	phytosteroid biosynthetic process	BP	0.0468138788775955	ROT3//BKI1//SIM//CVP1//AT3G24040//HYD1//WAVH1
GO:0016246	RNA interference	BP	0.0471989208538551	mtACP3//ATTIF3K1//At-RS31//DRB3//DDL//AT1G52310//AT2G03280//AtTHO6
GO:0042542	response to hydrogen peroxide	BP	0.0471989208538551	AT5G37670//AT5G02480//ATERDJ3B//AT2G43630//ATS9//AT1G14200//AtSDF2//AT2G44660
GO:0051301	cell division	BP	0.0491998986366527	PRL1//ICU2//VIP4//AT5G55830//AT5G11480//PAS2//SIM//APC8//POR//CYCD3//CCS52A1//ATVPS9A//AT1G56350//ATMYA1
GO:0006553	lysine metabolic process	BP	0.0507392045657902	AGD2//AT1G14810
GO:0010948	negative regulation of cell cycle proces...	BP	0.0507392045657902	SIM//CVP1
GO:1902275	regulation of chromatin organization	BP	0.0507392045657902	AtMORC1//VEL1
GO:1903308	regulation of chromatin modification	BP	0.0507392045657902	AtMORC1//VEL1
GO:0009615	response to virus	BP	0.0532421743808915	mtACP3//ATTIF3K1//DRB3//DDL//AT3G03040//AT1G52310//AGO2//AT2G03280
GO:0010026	trichome differentiation	BP	0.0535360469771476	ICU2//AtMYB103//SIM//VEL1//CCS52A1//ATMYA1//AtAUX1
GO:0016131	brassinosteroid metabolic process	BP	0.0535360469771476	ROT3//BKI1//SIM//CVP1//AT3G24040//HYD1//WAVH1
GO:0009067	aspartate family amino acid biosynthetic...	BP	0.0559043228968161	AT4G15820//AT5G65760//AtSDIR1//AGD2//AtCGS1//AT1G14810//AT2G05830
GO:0016128	phytosteroid metabolic process	BP	0.0559043228968161	ROT3//BKI1//SIM//CVP1//AT3G24040//HYD1//WAVH1
GO:0051726	regulation of cell cycle	BP	0.0559343921639649	PRL1//ICU2//SIM//APC8//CYCD3//CCS52A1//CVP1//AT3G23740//LGO//AT1G10780//ICK1
GO:0051171	regulation of nitrogen compound metaboli...	BP	0.0574993665035954	bHLH104//PRL1//AT5G04320//ICU2//AT5G65320//AtMYB103//AT-HSFA9//AT5G51910//AT5G44080//AT5G13240//AT5G06770//AT5G02850//ATTIF3K1//At-RS31//AtMYB45//APC8//AT4G39780//AtMORC1//CBNAC//CYCD3//IAA29//ARR10//AT4G31270//ANAC073//CCS52A1//CVP1//DDL//AT3G23740//GATA17//AT3G13226//AT3G21810//AT3G26850//RDM1//LGO//AT1G52310//AT1G69580//SR45a//AtMYB117//AT1G21060//ADAP//ATORC4//AT1G10780//AT1G36060//PTB3//AT1G10120//ARR8//MYBC1//ICK1//AT2G37650
GO:0000902	cell morphogenesis	BP	0.0579488300190723	AT4G14160//AT5G32440//ROT3//ICU2//PSL5//AtMYB103//ASK2//PAS2//ATGRP-8//ATEXP9//APC8//ACT12//VEL1//CCS52A1//ATMYA1//ATS9//ATEXP6//AtAUX1
GO:1903047	mitotic cell cycle process	BP	0.0594118736732344	ICU2//VIP4//AT5G55830//AT5G11480//SIM//APC8//CYCD3//ATVPS9A//AT1G10780//AT2G01710//ICK1
GO:0001676	long-chain fatty acid metabolic process	BP	0.0595641407865274	AT1G03150//ACX5
GO:0010039	response to iron ion	BP	0.0607800926643958	ATP5//ACO3//AT2G05830
GO:0002252	immune effector process	BP	0.0620411640635652	mtACP3//ATTIF3K1//DRB3//DDL//AT3G03040//AT1G52310//AGO2//AT2G03280
GO:0010605	negative regulation of macromolecule met...	BP	0.062112593915349	PRL1//mtACP3//AT5G13240//PAS2//SIM//ATTIF3K1//At-RS31//AtMORC1//CBNAC//CVP1//DRB3//DDL//RDM1//AT1G52310//HYD1//ATORC4//AT2G03280//ICK1//AtTHO6
GO:0019219	regulation of nucleobase-containing comp...	BP	0.0632719797226812	bHLH104//PRL1//AT5G04320//ICU2//AT5G65320//AtMYB103//AT-HSFA9//AT5G51910//AT5G44080//AT5G13240//AT5G06770//AT5G02850//ATTIF3K1//At-RS31//AtMYB45//APC8//AT4G39780//AtMORC1//CBNAC//CYCD3//IAA29//AT4G31270//ANAC073//CCS52A1//CVP1//DDL//AT3G23740//GATA17//AT3G13226//AT3G21810//AT3G26850//RDM1//LGO//AT1G52310//AT1G69580//SR45a//AtMYB117//AT1G21060//ADAP//ATORC4//AT1G10780//AT1G36060//PTB3//AT1G10120//ARR8//MYBC1//ICK1//AT2G37650
GO:0048581	negative regulation of post-embryonic de...	BP	0.0636420865675352	ICU2//VIP4//ADAP//AtTHO6
GO:0009086	methionine biosynthetic process	BP	0.0661703093711631	AT4G15820//AT5G65760//AtSDIR1//AtCGS1//AT1G14810//AT2G05830
GO:0009892	negative regulation of metabolic process	BP	0.0670833433860748	PRL1//mtACP3//BKI1//AT5G13240//PAS2//SIM//ATTIF3K1//At-RS31//AtMORC1//CBNAC//CVP1//DRB3//DDL//RDM1//AT1G52310//HYD1//ATORC4//AIR3//AT2G03280//ICK1//AtTHO6
GO:0009408	response to heat	BP	0.0684441625744564	AT-HSFA9//AT5G37670//AT5G02480//ATERDJ3B//AT2G43630//ATS9//AT1G14200//AtSDF2//AT2G44660
GO:0006555	methionine metabolic process	BP	0.0692248280445958	AT4G15820//AT5G65760//AtSDIR1//AtCGS1//AT1G14810//AT2G05830
GO:0055076	transition metal ion homeostasis	BP	0.0723365897959126	ATP5//ATCCS//ACO3
GO:0051302	regulation of cell division	BP	0.0723847660240742	PAS2//SIM//APC8//CCS52A1
GO:0006066	alcohol metabolic process	BP	0.072987238203025	ROT3//BKI1//SIM//SIR//AT4G31310//AT4G10070//CVP1//AT3G24040//LAG1//HYD1//AT1G48430//HMG2//WAVH1//AtITPK4//ATCB5-B
GO:0000956	nuclear-transcribed mRNA catabolic proce...	BP	0.07432364026527	CBNAC//AT4G31430//AT4G10070//DDL//AT2G41020