GOID TERM ONTOLOGY pValue Genes GO:0046173 polyol biosynthetic process BP 0.0098208240393624 AT3G56290//AT3G55190//AMT1;2//BBX25 GO:0006863 purine nucleobase transport BP 0.0150744276067329 ATATG18E//AT3G16960//AT3G19940//AT1G76530//AT1G63550 GO:0015851 nucleobase transport BP 0.0150744276067329 ATATG18E//AT3G16960//AT3G19940//AT1G76530//AT1G63550 GO:0009788 negative regulation of abscisic acid-act... BP 0.0158382651875389 AGB1//ATGPA1 GO:1901420 negative regulation of response to alcoh... BP 0.0158382651875389 AGB1//ATGPA1 GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 0.0282687379305681 AT3G56290//AMT1;2//BBX25 GO:0032958 inositol phosphate biosynthetic process BP 0.0282687379305681 AT3G56290//AMT1;2//BBX25 GO:0033517 myo-inositol hexakisphosphate metabolic ... BP 0.0282687379305681 AT3G56290//AMT1;2//BBX25 GO:0019751 polyol metabolic process BP 0.0305675072461005 AT3G56290//AT3G55190//AMT1;2//BBX25 GO:0007186 G-protein coupled receptor signaling pat... BP 0.0325895051742389 ATXLG1//ATGPA1 GO:0031123 RNA 3'-end processing BP 0.03650637769904 CPZ//PAB3 GO:0009787 regulation of abscisic acid-activated si... BP 0.040594041391129 AGB1//ATGPA1 GO:0048439 flower morphogenesis BP 0.0415521855917786 PTL//ARK3//SRS5 GO:0080090 regulation of primary metabolic process BP 0.0475037439715975 TFIIB//HDG4//AT5G66980//AT5G38320//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//AT1G61740//ASY1//SUF4//AT2G22610//HY3//cycp3;1//AT2G35310//AT2G33720 GO:1901419 regulation of response to alcohol BP 0.0492526635268726 AGB1//ATGPA1 GO:0043647 inositol phosphate metabolic process BP 0.0546140417450063 AT3G56290//AMT1;2//BBX25 GO:0009886 post-embryonic morphogenesis BP 0.0653071701700075 PUCHI//PTL//ABCG18//AT4G02180//AtGRF5//ARK3//CKRC1//SRS5//AT2G22610 GO:0051252 regulation of RNA metabolic process BP 0.066877517121687 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0019219 regulation of nucleobase-containing comp... BP 0.0714727125049364 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//ASY1//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0051171 regulation of nitrogen compound metaboli... BP 0.080171873070504 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//ASY1//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0010051 xylem and phloem pattern formation BP 0.0823741882406017 PTL//ARK3//CKRC1 GO:0010016 shoot system morphogenesis BP 0.0840519588777811 PTL//ABCG18//AtGRF5//ARK3//CKRC1//SRS5//ASL5 GO:0006397 mRNA processing BP 0.0885833278238531 AT5G53680//ATNUC-L2//PAB3//AT2G47790 GO:0009889 regulation of biosynthetic process BP 0.0895879546043497 TFIIB//HDG4//AT5G66980//AT5G38320//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//AT1G61740//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0010467 gene expression BP 0.0917387499210036 TFIIB//HDG4//AT5G27800//AT5G66980//AT5G53680//NRPB6A//DEG9//PUCHI//PTL//HD2C//AT3G56290//ATEIF3C-1//AT4G39780//atbzip14//AGB1//ATWRKY32//RPS18C//PMI1//AGL79//ATNUC-L2//bHLH34//AtGRF5//AT3G04230//ATHAP2B//AT3G02270//AT1G43860//ANAC012//emb2386//AT1G20910//ANAC020//BBX25//CPZ//AT2G42710//PAB3//SUF4//AT2G22610//HY3//AT2G47790//AT2G35310//ATGPA1//AT2G33720 GO:0006066 alcohol metabolic process BP 0.094138797542604 AT3G56290//AT3G55190//CKRC1//AMT1;2//BBX25//RCI3//HY3 GO:0006355 regulation of transcription, DNA-templat... BP 0.0951247732353626 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:1903506 regulation of nucleic acid-templated tra... BP 0.0951247732353626 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:2001141 regulation of RNA biosynthetic process BP 0.0951247732353626 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0009642 response to light intensity BP 0.102536490150663 AT5G53680//ATCHIA//HSC70-5//HY3//ATGPA1 GO:0046165 alcohol biosynthetic process BP 0.103168380931127 AT3G56290//AT3G55190//CKRC1//AMT1;2//BBX25//RCI3 GO:0006366 transcription from RNA polymerase II pro... BP 0.106210540325923 TFIIB//NRPB6A GO:0042744 hydrogen peroxide catabolic process BP 0.106210540325923 AT3G49220//AGB1 GO:0000398 mRNA splicing, via spliceosome BP 0.107357069608554 AT5G53680//ATNUC-L2//AT2G47790 GO:0006351 transcription, DNA-templated BP 0.107390625998072 TFIIB//HDG4//AT5G66980//NRPB6A//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//AT2G42710//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0097659 nucleic acid-templated transcription BP 0.107390625998072 TFIIB//HDG4//AT5G66980//NRPB6A//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//AT2G42710//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0060255 regulation of macromolecule metabolic pr... BP 0.108902378282793 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//ASY1//SUF4//AT2G22610//HY3//cycp3;1//AT2G35310//AT2G33720 GO:0032774 RNA biosynthetic process BP 0.109769179947913 TFIIB//HDG4//AT5G66980//NRPB6A//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//AT2G42710//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0010556 regulation of macromolecule biosynthetic... BP 0.110052245178727 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:2000112 regulation of cellular macromolecule bio... BP 0.110052245178727 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0031323 regulation of cellular metabolic process BP 0.117544737104111 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//ASY1//SUF4//AT2G22610//HY3//cycp3;1//AT2G35310//AT2G33720 GO:0009968 negative regulation of signal transducti... BP 0.117885003897573 AGB1//ATGPA1 GO:0010648 negative regulation of cell communicatio... BP 0.117885003897573 AGB1//ATGPA1 GO:0023057 negative regulation of signaling BP 0.117885003897573 AGB1//ATGPA1 GO:0031326 regulation of cellular biosynthetic proc... BP 0.124481811035583 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0010468 regulation of gene expression BP 0.12562456277681 TFIIB//HDG4//AT5G66980//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//SUF4//AT2G22610//HY3//AT2G35310//AT2G33720 GO:0008380 RNA splicing BP 0.130037911631349 TFIIB//AT5G53680//NRPB6A//ATNUC-L2//AT2G47790 GO:0000375 RNA splicing, via transesterification re... BP 0.13081171188388 AT5G53680//ATNUC-L2//AT2G47790 GO:0000377 RNA splicing, via transesterification re... BP 0.13081171188388 AT5G53680//ATNUC-L2//AT2G47790 GO:0071214 cellular response to abiotic stimulus BP 0.13081171188388 ATCHIA//HY3//ATGPA1 GO:0071478 cellular response to radiation BP 0.135953465876393 HY3//ATGPA1 GO:0071482 cellular response to light stimulus BP 0.135953465876393 HY3//ATGPA1 GO:0010106 cellular response to iron ion starvation BP 0.143159477161081 CRK26//RCI3//AT1G08670 GO:0009718 anthocyanin-containing compound biosynth... BP 0.148318531588215 AT5G38320//bHLH34 GO:0048449 floral organ formation BP 0.148635828558306 PTL//AT4G02180//AtGRF5//AT2G22610 GO:0071705 nitrogen compound transport BP 0.152518941320486 AT1G51850//DEG9//ATATG18E//CRK26//AT3G16960//AT3G19940//AT1G76530//AT1G63550//AMT1;2//AT1G59740//ZIP5//RCI3//AT1G08670 GO:0035304 regulation of protein dephosphorylation BP 0.154584384067183 AGB1//PMI1 GO:0006470 protein dephosphorylation BP 0.155877182419124 AGB1//AT1G07160//PMI1 GO:0006413 translational initiation BP 0.160900521301067 ATEIF3C-1//AT3G02270 GO:0035303 regulation of dephosphorylation BP 0.160900521301067 AGB1//PMI1 GO:0019220 regulation of phosphate metabolic proces... BP 0.164545002147513 AGB1//PMI1//cycp3;1 GO:0051174 regulation of phosphorus metabolic proce... BP 0.164545002147513 AGB1//PMI1//cycp3;1 GO:0000059 protein import into nucleus, docking BP 0.1656945960213 424_ GO:0009785 blue light signaling pathway BP 0.1656945960213 375_ GO:0010022 meristem determinacy BP 0.1656945960213 992_ GO:0010769 regulation of cell morphogenesis involve... BP 0.1656945960213 114_ GO:0030522 intracellular receptor signaling pathway BP 0.1656945960213 375_ GO:0031329 regulation of cellular catabolic process BP 0.1656945960213 208_ GO:0032508 DNA duplex unwinding BP 0.1656945960213 789_ GO:0060284 regulation of cell development BP 0.1656945960213 114_ GO:0071577 zinc II ion transmembrane transport BP 0.1656945960213 574_ GO:0080092 regulation of pollen tube growth BP 0.1656945960213 114_ GO:0009991 response to extracellular stimulus BP 0.165870431066115 ATCHIA//ATATG18E//CRK26//AGB1//RCI3//AT1G08670 GO:0031399 regulation of protein modification proce... BP 0.1733530492028 AGB1//PMI1//cycp3;1 GO:0009887 organ morphogenesis BP 0.176112705186919 PTL//AGB1//AT4G02180//AtGRF5//ARK3//CKRC1//AT2G22610//ASL5 GO:0016070 RNA metabolic process BP 0.177320432680333 TFIIB//HDG4//AT5G27800//AT5G66980//AT5G53680//NRPB6A//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//RPS18C//PMI1//AGL79//ATNUC-L2//bHLH34//AtGRF5//ATHAP2B//AT1G43860//ANAC012//emb2386//AT1G20910//ANAC020//BBX25//CPZ//AT2G42710//PAB3//SUF4//AT2G22610//HY3//AT2G47790//AT2G35310//ATGPA1//AT2G33720 GO:0022603 regulation of anatomical structure morph... BP 0.177806666904726 TFIIB//AtPERK6//ATXLG1 GO:0009845 seed germination BP 0.179698591195188 AGB1//AtGRF5//HY3//ATGPA1 GO:0032268 regulation of cellular protein metabolic... BP 0.179698591195188 AGB1//PMI1//AT3G02270//cycp3;1 GO:0031540 regulation of anthocyanin biosynthetic p... BP 0.180680229104677 559_ GO:0032392 DNA geometric change BP 0.180680229104677 789_ GO:0006826 iron ion transport BP 0.182291763771304 CRK26//RCI3//AT1G08670 GO:0009744 response to sucrose BP 0.183278081850043 bHLH34//BBX25//ATXLG1//ATGPA1 GO:0019222 regulation of metabolic process BP 0.184993646982494 TFIIB//HDG4//AT5G66980//AT5G58840//AT5G38320//PUCHI//PTL//HD2C//AT3G56290//AT4G39780//atbzip14//AGB1//ATWRKY32//PMI1//AGL79//bHLH34//AtGRF5//ATHAP2B//AT3G02270//AT1G43860//ANAC012//AT1G20910//ANAC020//BBX25//PAB3//AT1G61740//ASY1//SUF4//AT2G22610//HY3//cycp3;1//AT2G35310//AT2G33720 GO:0034285 response to disaccharide BP 0.186881116428948 bHLH34//BBX25//ATXLG1//ATGPA1 GO:0006857 oligopeptide transport BP 0.191351684939696 AT1G51850//AT1G59740//ZIP5 GO:0015833 peptide transport BP 0.191351684939696 AT1G51850//AT1G59740//ZIP5 GO:0048447 sepal morphogenesis BP 0.193106800973343 PTL//AT2G22610 GO:0048451 petal formation BP 0.193106800973343 PTL//AT2G22610 GO:0048453 sepal formation BP 0.193106800973343 PTL//AT2G22610 GO:0006396 RNA processing BP 0.193954833996784 TFIIB//AT5G53680//NRPB6A//ATNUC-L2//CPZ//PAB3//AT2G47790//ATGPA1 GO:0006606 protein import into nucleus BP 0.194155533636468 AT4G16680//ATCRM1//DEG9//AIMP GO:0044744 protein targeting to nucleus BP 0.194155533636468 AT4G16680//ATCRM1//DEG9//AIMP GO:0051170 nuclear import BP 0.194155533636468 AT4G16680//ATCRM1//DEG9//AIMP GO:0051246 regulation of protein metabolic process BP 0.194155533636468 AGB1//PMI1//AT3G02270//cycp3;1 GO:1902593 single-organism nuclear import BP 0.194155533636468 AT4G16680//ATCRM1//DEG9//AIMP GO:0006935 chemotaxis BP 0.195398084495629 114_ GO:0009313 oligosaccharide catabolic process BP 0.195398084495629 981_ GO:0009900 dehiscence BP 0.195398084495629 703_ GO:0010183 pollen tube guidance BP 0.195398084495629 114_