GOID TERM ONTOLOGY pValue Genes GO:0050793 regulation of developmental process BP 0.00135403692481898 BUB3.2//BBX1//AtMYB17//DDF1//DNF//AtPERK6//CDKB2;1//BBX22//AGL22//BLH8//AGL9//AT2G38160 GO:0010099 regulation of photomorphogenesis BP 0.007019542999905 BBX1//BBX22 GO:0048581 negative regulation of post-embryonic de... BP 0.00804231784671817 BBX1//DNF//AGL22 GO:0051093 negative regulation of developmental pro... BP 0.00995576298625353 BBX1//DNF//AGL22//BLH8 GO:2000030 regulation of response to red or far red... BP 0.0101221018424575 BBX1//BBX22 GO:0051241 negative regulation of multicellular org... BP 0.0129295402818657 BBX1//DNF//AGL22 GO:0009751 response to salicylic acid BP 0.0157226864475434 ATTBP3//AtMYB17//BT3//ATWAKL10//BBX22//GLIP2//AGL22//AT2G17850 GO:2000026 regulation of multicellular organismal d... BP 0.0182717599367513 BBX1//AtMYB17//DDF1//DNF//CDKB2;1//BBX22//AGL22//AT2G38160 GO:0048580 regulation of post-embryonic development BP 0.0193229486501509 BBX1//AtMYB17//DNF//BBX22//AGL22//AT2G38160 GO:0051239 regulation of multicellular organismal p... BP 0.0242392338289967 BBX1//AtMYB17//DDF1//DNF//CDKB2;1//BBX22//AGL22//AT2G38160 GO:2000242 negative regulation of reproductive proc... BP 0.0247200949424055 DNF//AGL22 GO:0048645 organ formation BP 0.0263559209861589 AtMYB117//BLH8//AGL9//AT2G38160 GO:0015804 neutral amino acid transport BP 0.0268582160732496 AAP1//AT1G76520//ATPROT1 GO:0048229 gametophyte development BP 0.0310609851486228 EDA41//XRI//BT3//AtCKS//AGL22//ATNAS3 GO:0036293 response to decreased oxygen levels BP 0.031219245898767 AtERF71//AT3G55790//AT2G17850 GO:0070482 response to oxygen levels BP 0.031219245898767 AtERF71//AT3G55790//AT2G17850 GO:2000241 regulation of reproductive process BP 0.0318630639592024 BBX1//AtMYB17//DNF//AGL22//AT2G38160 GO:0010074 maintenance of meristem identity BP 0.0325627707688257 AGL22//BLH8 GO:0009555 pollen development BP 0.0336273749722295 XRI//BT3//AtCKS//AGL22//ATNAS3 GO:0000280 nuclear division BP 0.0408918940495203 XRI//CDKB2;1//HEI10//APD1 GO:0019827 stem cell maintenance BP 0.0412402271809155 AGL22//BLH8 GO:0048863 stem cell differentiation BP 0.0412402271809155 AGL22//BLH8 GO:0048864 stem cell development BP 0.0412402271809155 AGL22//BLH8 GO:0014070 response to organic cyclic compound BP 0.0421973014837669 ATTBP3//CDL1//AtMYB17//BT3//CDKB2;1//ATWAKL10//BBX22//GLIP2//AGL22//AT2G17850 GO:0009640 photomorphogenesis BP 0.0445416818747753 BBX1//BBX24//BBX22 GO:0003002 regionalization BP 0.0488682129152092 BT3//AtMYB117//BLH8//AGL9 GO:0006468 protein phosphorylation BP 0.0506043569883255 SRF2//AT3G45390//CRK37//AtPERK6//CDKB2;1//AT1G53420//AT1G07560//ATWAKL10//AT1G54820 GO:0001708 cell fate specification BP 0.0506777468357995 ATMYB66//AGL9 GO:0045596 negative regulation of cell differentiat... BP 0.0506777468357995 AGL22//BLH8 GO:0048507 meristem development BP 0.0546138593962806 DDF1//CDKB2;1//AGL22//BLH8//AGL9 GO:0009909 regulation of flower development BP 0.0561258969057154 BBX1//AtMYB17//AGL22//AT2G38160 GO:0006259 DNA metabolic process BP 0.0578631394923742 BUB3.2//BBX1//XRI//AT3G48900//AT1G75090//CDKB2;1//HEI10 GO:0045165 cell fate commitment BP 0.0608050486540064 ATMYB66//AGL9 GO:0048285 organelle fission BP 0.0623279932778253 XRI//CDKB2;1//HEI10//APD1 GO:0006281 DNA repair BP 0.063932985947879 BBX1//XRI//AT3G48900//AT1G75090 GO:0007167 enzyme linked receptor protein signaling... BP 0.0643225640411589 SRF2//AT1G53420 GO:0007169 transmembrane receptor protein tyrosine ... BP 0.0643225640411589 SRF2//AT1G53420 GO:0016310 phosphorylation BP 0.067944182182341 SRF2//AT3G45390//CRK37//AtPERK6//CDKB2;1//AT1G53420//AT1G07560//ATWAKL10//BBX22//AGL22//AT1G54820 GO:0022603 regulation of anatomical structure morph... BP 0.0758147784647341 BUB3.2//AtPERK6//CDKB2;1 GO:0032502 developmental process BP 0.0784116634109226 LEC2//BUB3.2//ER-ANT1//BBX1//ATMYB66//EDA41//XRI//AT5G48750//AtMYB17//AT3G60650//AtCWIN2//AT3G50210//AT4G26040//DDF1//DNF//BT3//AtPERK6//U11/U12-31K//CDKB2;1//BBX24//AtMYB117//AtCKS//BBX22//AGL22//BLH8//ATNAS3//AT2G17850//AGL9//AT2G38160 GO:0006974 cellular response to DNA damage stimulus BP 0.0793404382071143 BBX1//XRI//AT3G48900//AT1G75090 GO:0009887 organ morphogenesis BP 0.0812603590174318 AT4G26040//AtMYB117//AGL22//BLH8//AGL9//AT2G38160 GO:0034654 nucleobase-containing compound biosynthe... BP 0.0813776966503356 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//ATIWS2//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//AtCKS//ATWAKL10//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0006355 regulation of transcription, DNA-templat... BP 0.0828782624337149 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:1903506 regulation of nucleic acid-templated tra... BP 0.0828782624337149 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:2001141 regulation of RNA biosynthetic process BP 0.0828782624337149 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0046165 alcohol biosynthetic process BP 0.0848130364600521 CDS2//AT4G18060//ATKCR2//AT2G15020//ATMTP11 GO:0051252 regulation of RNA metabolic process BP 0.0865374753037147 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0007389 pattern specification process BP 0.0867316053419262 BT3//AtMYB117//BLH8//AGL9 GO:0048831 regulation of shoot system development BP 0.0867316053419262 BBX1//AtMYB17//AGL22//AT2G38160 GO:0048585 negative regulation of response to stimu... BP 0.0879224427916137 BBX1//DNF//BBX22//GLIP2//AGL22 GO:0044767 single-organism developmental process BP 0.0899308536686126 LEC2//BUB3.2//ER-ANT1//BBX1//ATMYB66//EDA41//XRI//AT5G48750//AtMYB17//AT3G60650//AtCWIN2//AT3G50210//AT4G26040//DDF1//DNF//BT3//AtPERK6//CDKB2;1//BBX24//AtMYB117//AtCKS//BBX22//AGL22//BLH8//ATNAS3//AT2G17850//AGL9//AT2G38160 GO:0048569 post-embryonic organ development BP 0.0952598826837802 AtMYB17//AT3G60650//AT4G26040//BT3//AGL22//AGL9//AT2G38160 GO:0010468 regulation of gene expression BP 0.0958303522618431 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//AT1G75090//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0090567 reproductive shoot system development BP 0.0972970801451415 BBX1//AtMYB17//AT4G26040//BT3//AGL22//BLH8//AGL9//AT2G38160 GO:0009753 response to jasmonic acid BP 0.0991065534235624 ATTBP3//AtMYB17//GATL2//BBX22//GLIP2//AGL22 GO:0051321 meiotic cell cycle BP 0.100772057973837 XRI//HEI10//AGL22 GO:0007166 cell surface receptor signaling pathway BP 0.10281450496149 SRF2//AT1G53420 GO:0006351 transcription, DNA-templated BP 0.107165330429846 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//ATIWS2//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0097659 nucleic acid-templated transcription BP 0.107165330429846 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//ATIWS2//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0032774 RNA biosynthetic process BP 0.107857665168155 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//ATIWS2//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0018130 heterocycle biosynthetic process BP 0.108997552131151 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//ATIWS2//DDF1//BT3//SPD1//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//AtCKS//ATWAKL10//HDG10//BBX22//AGL22//BLH8//BEH4//ATNAS3//AGL9//AT2G33720 GO:0044707 single-multicellular organism process BP 0.109631612133598 LEC2//ER-ANT1//BBX1//ATMYB66//EDA41//XRI//AT5G48750//AtMYB17//AT3G60650//AT4G26040//DDF1//DNF//BT3//CDI3//CDKB2;1//BBX24//AtMYB117//AtCKS//BBX22//AGL22//BLH8//ATNAS3//AGL9//AT2G38160 GO:0048437 floral organ development BP 0.111046176728891 AtMYB17//AT4G26040//BT3//AGL22//AGL9//AT2G38160 GO:0010556 regulation of macromolecule biosynthetic... BP 0.112192456881457 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0019219 regulation of nucleobase-containing comp... BP 0.112192456881457 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:2000112 regulation of cellular macromolecule bio... BP 0.112192456881457 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:1901362 organic cyclic compound biosynthetic pro... BP 0.112962006511059 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//ATIWS2//AT4G18060//CRK37//DDF1//BT3//SPD1//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//AtCKS//ATWAKL10//HDG10//BBX22//AGL22//BLH8//BEH4//ATNAS3//AGL9//ATKCR2//AT2G33720 GO:0009165 nucleotide biosynthetic process BP 0.114333643841494 XRI//AtCKS//ATWAKL10 GO:0045595 regulation of cell differentiation BP 0.115349539796381 AGL22//BLH8 GO:0044260 cellular macromolecule metabolic process BP 0.115827258364698 AtERF71//LEC2//BUB3.2//BBX1//ATMYB66//AT5G27800//XRI//AT5G18140//SRF2//CDL1//AtMYB17//AT3G48900//AT3G45390//GAMMA-VPE//ATIWS2//AT4G18060//CRK37//DDF1//BT3//AtPERK6//AT3G09540//SPD1//U11/U12-31K//AT3G11580//AT1G75090//CDKB2;1//AT1G11040//HEI10//AT1G53420//AT1G26610//AT1G07560//AtMYB117//AtCKS//ATWAKL10//AT1G01670//HCS2//AT1G71000//HDG10//BBX22//AT2G42750//AGL22//BLH8//AT1G54820//BEH4//AT2G17850//AGL9//AT2G38160//AT2G33720 GO:0048513 organ development BP 0.116332154350621 ER-ANT1//ATMYB66//AtMYB17//AT3G60650//AT4G26040//DDF1//BT3//CDKB2;1//AtMYB117//AGL22//BLH8//AGL9//AT2G38160 GO:1901293 nucleoside phosphate biosynthetic proces... BP 0.117125644140993 XRI//AtCKS//ATWAKL10 GO:0007049 cell cycle BP 0.117281936007893 BUB3.2//XRI//CDKB2;1//HEI10//AGL22//APD1 GO:0065007 biological regulation BP 0.118888911128017 AtERF71//LEC2//BUB3.2//BBX1//ATMYB66//AT5G61820//AT5G58830//AT5G55800//XRI//AT5G48770//AT5G37610//SRF2//CDL1//AtMYB17//AT4G18060//DDF1//DNF//BT3//AtPERK6//AT3G25160//U11/U12-31K//AT3G11580//CDI3//AT1G75090//CDKB2;1//AT1G76520//AT1G53420//AT1G26610//AtMYB117//HDG10//BBX22//GLIP2//AGL22//BLH8//BEH4//AT2G17850//AGL9//AT2G19650//ATMTP11//AT2G38160//AT2G33720 GO:0051171 regulation of nitrogen compound metaboli... BP 0.120425520399664 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0006418 tRNA aminoacylation for protein translat... BP 0.122433407943498 739_ GO:0009913 epidermal cell differentiation BP 0.122433407943498 585_ GO:0030855 epithelial cell differentiation BP 0.122433407943498 585_ GO:0043038 amino acid activation BP 0.122433407943498 739_ GO:0043039 tRNA aminoacylation BP 0.122433407943498 739_ GO:0046688 response to copper ion BP 0.122433407943498 963_ GO:0030048 actin filament-based movement BP 0.123911889259472 AtCWIN2//AT2G04750 GO:0050789 regulation of biological process BP 0.125047685282328 AtERF71//LEC2//BUB3.2//BBX1//ATMYB66//AT5G61820//AT5G58830//AT5G55800//XRI//AT5G48770//AT5G37610//SRF2//CDL1//AtMYB17//AT4G18060//DDF1//DNF//BT3//AtPERK6//AT3G25160//U11/U12-31K//AT3G11580//AT1G75090//CDKB2;1//AT1G53420//AT1G26610//AtMYB117//HDG10//BBX22//GLIP2//AGL22//BLH8//BEH4//AT2G17850//AGL9//AT2G19650//AT2G38160//AT2G33720 GO:0009791 post-embryonic development BP 0.125065011391735 LEC2//ER-ANT1//BBX1//AtMYB17//AT3G60650//AT4G26040//DNF//BT3//CDKB2;1//BBX24//BBX22//AGL22//BLH8//AGL9//AT2G38160 GO:0031326 regulation of cellular biosynthetic proc... BP 0.127431396951807 AtERF71//LEC2//ATMYB66//XRI//CDL1//AtMYB17//DDF1//BT3//AT3G11580//CDKB2;1//AT1G26610//AtMYB117//HDG10//BBX22//AGL22//BLH8//BEH4//AGL9//AT2G33720 GO:0009314 response to radiation BP 0.129412223426812 BBX1//XRI//DNF//BT3//AT3G17800//AT1G52770//BBX24//AT1G71000//BBX22//UGT73C1 GO:0055085 transmembrane transport BP 0.131176735504427 ER-ANT1//AT5G37610//ATCHX3//AT1G76520//AT1G78180//ATNAT7//ATMTP11 GO:0006857 oligopeptide transport BP 0.132622601864975 AT3G45720//AtPTR6 GO:0015824 proline transport BP 0.132622601864975 AT1G76520//ATPROT1 GO:0015833 peptide transport BP 0.132622601864975 AT3G45720//AtPTR6 GO:0042743 hydrogen peroxide metabolic process BP 0.132901678967949 AT4G16190//BBX22//AGL22//AT2G17850 GO:0009653 anatomical structure morphogenesis BP 0.133322984587731 BUB3.2//ATMYB66//AtCWIN2//AT4G26040//BT3//AtPERK6//CDKB2;1//AtMYB117//AtCKS//AGL22//BLH8//ATNAS3//AGL9//AT2G38160 GO:0006897 endocytosis BP 0.133826056774327 001_ GO:0009225 nucleotide-sugar metabolic process BP 0.133826056774327 373_ GO:0010022 meristem determinacy BP 0.133826056774327 054_ GO:0010582 floral meristem determinacy BP 0.133826056774327 054_ GO:0016093 polyprenol metabolic process BP 0.133826056774327 360_ GO:0016094 polyprenol biosynthetic process BP 0.133826056774327 360_ GO:0019348 dolichol metabolic process BP 0.133826056774327 360_