GOID	TERM	ONTOLOGY	pValue	Genes
GO:0006260	DNA replication	BP	0.000326108736724785	CYCA1;1//EMB161//AT5G25580//ATORC3//AT5G02370//AT4G24820//DEL3//CDC45//AT3G27640//ATWHY1//ATPCNA2
GO:0006261	DNA-dependent DNA replication	BP	0.00245515331369754	CYCA1;1//EMB161//ATORC3//DEL3//CDC45//AT3G27640//ATPCNA2
GO:0006259	DNA metabolic process	BP	0.0056067649218236	AT4G17020//CYCA1;1//EMB161//AT5G25580//ATORC3//AT5G02370//AT4G24820//APP//DEL3//CDC45//AT3G27640//UBC16//ATWHY1//ATPCNA2
GO:0006281	DNA repair	BP	0.00985627656277514	AT4G17020//ATORC3//AT5G02370//APP//UBC16//ATWHY1//ATPCNA2
GO:0006301	postreplication repair	BP	0.0147473547314457	UBC16//ATPCNA2
GO:0006974	cellular response to DNA damage stimulus	BP	0.0206394342813698	AT4G17020//ATORC3//AT5G02370//APP//UBC16//ATWHY1//ATPCNA2
GO:0006334	nucleosome assembly	BP	0.0224648596228049	H2B//NRP2//HIS4
GO:0034728	nucleosome organization	BP	0.0224648596228049	H2B//NRP2//HIS4
GO:0006820	anion transport	BP	0.0230594685201408	AT1G51840//ATCAT6//AT4G24820//AT4G08940//CYP87A2//AT1G05350//CYP705A8//BGLU15
GO:0065004	protein-DNA complex assembly	BP	0.0238014152601794	H2B//NRP2//HIS4
GO:0071824	protein-DNA complex subunit organization	BP	0.0238014152601794	H2B//NRP2//HIS4
GO:0031497	chromatin assembly	BP	0.0360106879977599	H2B//NRP2//HIS4
GO:0008283	cell proliferation	BP	0.0370133060648267	CYCA1;1//AT5G25580//H2B//CDC45//NRP2//ATPCNA2
GO:0006323	DNA packaging	BP	0.0377247052539027	H2B//NRP2//HIS4
GO:0043414	macromolecule methylation	BP	0.0378849936241838	CYCA1;1//AT5G25580//AT5G53920//RBL//AT4G10450//AT4G01730//CDC45//AT3G06700//AT2G28600//ATPCNA2
GO:0098656	anion transmembrane transport	BP	0.0379045847060089	ATCAT6//BGLU15
GO:0032259	methylation	BP	0.0407520573641761	CYCA1;1//AT5G25580//AT5G53920//RBL//AT4G10450//AT4G01730//CDC45//AT3G06700//AT2G28600//ATPCNA2
GO:0010029	regulation of seed germination	BP	0.0409932106830656	ARR2//AtERDL6
GO:1900140	regulation of seedling development	BP	0.0441733064561958	ARR2//AtERDL6
GO:0051567	histone H3-K9 methylation	BP	0.0482686773249822	CYCA1;1//AT5G25580//AT4G01730//CDC45//ATPCNA2
GO:0061647	histone H3-K9 modification	BP	0.0482686773249822	CYCA1;1//AT5G25580//AT4G01730//CDC45//ATPCNA2
GO:0043412	macromolecule modification	BP	0.0500213164128873	CYCA1;1//RANGAP2//LYK3//AT5G25580//AT5G61550//AT5G53920//AT5G02370//RBL//AT3G51270//AT4G24820//AT4G10450//APP//AT4G01730//AT1G66930//AT3G21340//MEF22//CDC45//ATNEK5//AT3G29010//AT3G06700//AT2G43850//AT1G04850//AT2G17530//AT2G28600//AT1G05350//AT1G61420//ATPCNA2
GO:0010106	cellular response to iron ion starvation	BP	0.0528980839205945	AT1G51840//CYP87A2//CYP705A8
GO:0006865	amino acid transport	BP	0.0562172914452303	ATCAT6//AT4G24820//AT4G08940//AT1G05350
GO:0006826	iron ion transport	BP	0.0614287950357237	AT1G51840//CYP87A2//CYP705A8
GO:0009735	response to cytokinin	BP	0.0614287950357237	ARR2//AT4G24820//ARR19
GO:0000910	cytokinesis	BP	0.0620743592055763	CYCA1;1//AT5G25580//ATORC3//AT4G01730//ATNPSN11
GO:0015849	organic acid transport	BP	0.0660478618276789	ATCAT6//AT4G24820//AT4G08940//AT1G05350
GO:0046942	carboxylic acid transport	BP	0.0660478618276789	ATCAT6//AT4G24820//AT4G08940//AT1G05350
GO:0043603	cellular amide metabolic process	BP	0.0687524896987713	AT4G09630//ATGGH1
GO:0000741	karyogamy	BP	0.0725621512360528	AT3G01160//AT2G28600
GO:0006635	fatty acid beta-oxidation	BP	0.0729327867953564	AT3G55890//AT3G51090//AT4G24820
GO:0071103	DNA conformation change	BP	0.0753416926992123	H2B//NRP2//HIS4
GO:0048284	organelle fusion	BP	0.076438615124507	AT3G01160//AT2G28600
GO:0006275	regulation of DNA replication	BP	0.0767163245576673	CYCA1;1//AT5G02370//ATWHY1//ATPCNA2
GO:0019395	fatty acid oxidation	BP	0.0777856503072936	AT3G55890//AT3G51090//AT4G24820
GO:0006325	chromatin organization	BP	0.0800112591059639	CYCA1;1//AT5G25580//H2B//AT5G02370//AT4G01730//CDC45//NRP2//HIS4//ATPCNA2
GO:0015711	organic anion transport	BP	0.0881983855856453	ATCAT6//AT4G24820//AT4G08940//AT1G05350
GO:0043090	amino acid import	BP	0.0884445169413609	AT4G24820//AT1G05350
GO:0051301	cell division	BP	0.0902137136420658	CYCA1;1//AT5G25580//ATORC3//AT4G24820//AT4G01730//ATNPSN11
GO:0022402	cell cycle process	BP	0.0902851914876203	CYCA1;1//AT5G25580//ATORC3//AT5G02370//AT4G24820//AT4G01730//CDC45//ATNPSN11
GO:0034440	lipid oxidation	BP	0.0905156716663157	AT3G55890//AT3G51090//AT4G24820
GO:0006479	protein methylation	BP	0.0916506905366973	CYCA1;1//AT5G25580//AT5G53920//AT4G01730//CDC45//ATPCNA2
GO:0008213	protein alkylation	BP	0.0916506905366973	CYCA1;1//AT5G25580//AT5G53920//AT4G01730//CDC45//ATPCNA2
GO:0071705	nitrogen compound transport	BP	0.0985887929908674	AT1G51840//DEG9//ATCAT6//AT4G24820//AT4G08940//CYP87A2//AT1G05350//CYP705A8
GO:0001510	RNA methylation	BP	0.102581712850406	RBL//AT4G10450//AT3G06700//AT2G28600
GO:0006333	chromatin assembly or disassembly	BP	0.106853050219849	H2B//NRP2//HIS4
GO:0018022	peptidyl-lysine methylation	BP	0.111687367616679	CYCA1;1//AT5G25580//AT4G01730//CDC45//ATPCNA2
GO:0034968	histone lysine methylation	BP	0.111687367616679	CYCA1;1//AT5G25580//AT4G01730//CDC45//ATPCNA2
GO:0044763	single-organism cellular process	BP	0.112659107736742	ATMAP70-5//AT4G17020//ARR2//CYCA1;1//RANGAP2//NFD3//LYK3//AT1G51840//EXT13//SHM2//AT5G25580//AT5G55800//AT5G53920//PKP-BETA1//ATMYB23//TSBtype2//ATORC3//ATCAT6//AT5G02370//AT3G55890//RBL//AT3G54510//AT3G51090//AT3G51570//AT4G24820//AT4G10050//AT4G09630//AOP//AT4G02820//APP//AT4G01730//CYP87A2//AT1G16840//AtERDL6//AT3G21340//AT3G15080//AtRABA1g//ARR19//CDC45//AT3G16060//AT3G04600//ATGLCAK//AT3G01160//AT2G43850//UBC16//AT1G04850//XXT4//NRP2//ATWHY1//ATGGH1//AT2G28600//At1g78690p//AT1G61420//ATPCNA2//CYP705A8//ATNPSN11//BGLU15//atnudt22
GO:0006305	DNA alkylation	BP	0.113476935829643	CYCA1;1//AT5G25580//CDC45//ATPCNA2
GO:0006306	DNA methylation	BP	0.113476935829643	CYCA1;1//AT5G25580//CDC45//ATPCNA2
GO:1903047	mitotic cell cycle process	BP	0.113539315041407	CYCA1;1//AT5G25580//ATORC3//AT5G02370//AT4G01730
GO:0044710	single-organism metabolic process	BP	0.114230500419958	ATMAP70-5//AT4G17020//PGSIP8//ARR2//CYCA1;1//RANGAP2//NFD3//SHM2//AT5G25580//AT5G55800//AT5G53920//PKP-BETA1//TSBtype2//ATORC3//AT5G02370//AT3G55890//RBL//AT3G54510//CYP71B30P//AT3G51090//AT4G24820//AT4G10050//AT4G09630//AOP//APP//AT4G01730//CYP87A2//AT1G16840//AtERDL6//AT3G21340//AT3G15080//CDC45//AT3G04600//ATGLCAK//AT1G02660//UBC16//AT1G04850//ATWHY1//ATGGH1//At1g78690p//AT1G05350//ATPCNA2//CYP705A8//CYP705A9//atnudt22
GO:0006304	DNA modification	BP	0.115715758811875	CYCA1;1//AT5G25580//CDC45//ATPCNA2
GO:0044728	DNA methylation or demethylation	BP	0.115715758811875	CYCA1;1//AT5G25580//CDC45//ATPCNA2
GO:0009451	RNA modification	BP	0.121094846754656	RBL//AT4G10450//MEF22//AT3G06700//AT2G28600
GO:0010015	root morphogenesis	BP	0.121282654884488	ARR2//EXT13//ATMYB23//AT4G24820//AT3G21340//NRP2
GO:0000911	cytokinesis by cell plate formation	BP	0.122548291893457	CYCA1;1//AT5G25580//ATORC3//AT4G01730
GO:0006464	cellular protein modification process	BP	0.122791227148725	CYCA1;1//RANGAP2//LYK3//AT5G25580//AT5G61550//AT5G53920//AT5G02370//AT3G51270//AT4G24820//APP//AT4G01730//AT1G66930//AT3G21340//CDC45//ATNEK5//AT3G29010//AT2G43850//AT1G04850//AT2G17530//AT1G05350//AT1G61420//ATPCNA2
GO:0036211	protein modification process	BP	0.122791227148725	CYCA1;1//RANGAP2//LYK3//AT5G25580//AT5G61550//AT5G53920//AT5G02370//AT3G51270//AT4G24820//APP//AT4G01730//AT1G66930//AT3G21340//CDC45//ATNEK5//AT3G29010//AT2G43850//AT1G04850//AT2G17530//AT1G05350//AT1G61420//ATPCNA2
GO:0009736	cytokinin-activated signaling pathway	BP	0.122822754655226	ARR2//ARR19
GO:0032506	cytokinetic process	BP	0.124863821387971	CYCA1;1//AT5G25580//ATORC3//AT4G01730
GO:1902410	mitotic cytokinetic process	BP	0.124863821387971	CYCA1;1//AT5G25580//ATORC3//AT4G01730
GO:0006760	folic acid-containing compound metabolic...	BP	0.126965507965861	137_
GO:0010411	xyloglucan metabolic process	BP	0.126965507965861	404_
GO:0010449	root meristem growth	BP	0.126965507965861	477_
GO:0042558	pteridine-containing compound metabolic ...	BP	0.126965507965861	137_
GO:0080050	regulation of seed development	BP	0.126965507965861	477_
GO:0071368	cellular response to cytokinin stimulus	BP	0.127323724627728	ARR2//ARR19
GO:0051276	chromosome organization	BP	0.127661316458946	CYCA1;1//AT5G25580//H2B//AT5G02370//AT4G01730//CDC45//NRP2//ATWHY1//HIS4//ATPCNA2
GO:0000281	mitotic cytokinesis	BP	0.129550676456206	CYCA1;1//AT5G25580//ATORC3//AT4G01730
GO:0009062	fatty acid catabolic process	BP	0.130265198149708	AT3G55890//AT3G51090//AT4G24820
GO:0061640	cytoskeleton-dependent cytokinesis	BP	0.131921583204222	CYCA1;1//AT5G25580//ATORC3//AT4G01730
GO:0030258	lipid modification	BP	0.1363824193957	AT3G55890//AT3G51090//AT4G24820
GO:0072329	monocarboxylic acid catabolic process	BP	0.1363824193957	AT3G55890//AT3G51090//AT4G24820
GO:0051053	negative regulation of DNA metabolic pro...	BP	0.138746942287429	493_
GO:0007018	microtubule-based movement	BP	0.145696825606351	AT5G02370//AT3G16060
GO:0006563	L-serine metabolic process	BP	0.150370729085487	800_
GO:0008643	carbohydrate transport	BP	0.150370729085487	456_
GO:0000160	phosphorelay signal transduction system	BP	0.150373527452891	ARR2//ARR19
GO:0022622	root system development	BP	0.150426075411194	ARR2//RANGAP2//EXT13//ATMYB23//AT4G24820//AT3G21340//NRP2
GO:0048364	root development	BP	0.150426075411194	ARR2//RANGAP2//EXT13//ATMYB23//AT4G24820//AT3G21340//NRP2
GO:0016570	histone modification	BP	0.155097858734779	CYCA1;1//AT5G25580//AT5G02370//AT4G01730//CDC45//ATPCNA2
GO:0015706	nitrate transport	BP	0.158534106204362	AT1G51840//CYP87A2//CYP705A8
GO:0051052	regulation of DNA metabolic process	BP	0.161716539930197	CYCA1;1//AT5G02370//ATWHY1//ATPCNA2
GO:0016192	vesicle-mediated transport	BP	0.162708119442336	AT4G24820//AT1G16840//AtRABA1g//ATVTI13//AT1G05350//ATNPSN11
GO:0048193	Golgi vesicle transport	BP	0.166907867522041	AT4G24820//AT1G16840//ATVTI13//AT1G05350
GO:0009560	embryo sac egg cell differentiation	BP	0.168350196842583	AT4G02820//AT3G01160//AT2G28600
GO:0044242	cellular lipid catabolic process	BP	0.168350196842583	AT3G55890//AT3G51090//AT4G24820
GO:0006888	ER to Golgi vesicle-mediated transport	BP	0.169363761478141	AT4G24820//AT1G05350
GO:0006997	nucleus organization	BP	0.169363761478141	AT3G01160//AT2G28600
GO:0007292	female gamete generation	BP	0.171661513447175	AT4G02820//AT3G01160//AT2G28600
GO:0010167	response to nitrate	BP	0.171661513447175	AT1G51840//CYP87A2//CYP705A8
GO:0006544	glycine metabolic process	BP	0.173153698758722	800_
GO:0009309	amine biosynthetic process	BP	0.173153698758722	515_
GO:0009688	abscisic acid biosynthetic process	BP	0.173153698758722	404_
GO:0016998	cell wall macromolecule catabolic proces...	BP	0.173153698758722	371_
GO:0031537	regulation of anthocyanin metabolic proc...	BP	0.173153698758722	477_
GO:0042401	cellular biogenic amine biosynthetic pro...	BP	0.173153698758722	515_