GOID TERM ONTOLOGY pValue Genes GO:0042744 hydrogen peroxide catabolic process BP 0.00219797523280731 AT5G39730//ATMDAR2//AT3G60750//AT3G44190//MDAR6//AT1G13930//AOAT1 GO:0016036 cellular response to phosphate starvatio... BP 0.00517906733603724 FBX2//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4 GO:0015979 photosynthesis BP 0.00519016319202609 RPS15//RPS11//RPL22//RPS4//RPS16//PSBK//AT5G45170//2-Cys//LHCB4.1//ABCI6//AT3G05410//AT1G29700//AT1G63610//PDE343//LPA3//ACO3//AtTLP18.3//PSAE-2//AT2G35410//PSAP GO:0015849 organic acid transport BP 0.00808891182874223 AtmtOM64//AAP3//AT5G17630//AT5G15870//AT5G44390//AT5G41800//ATGLR2.5//LAX1//CRK13//AT3G20650//AT3G30390//GLP5//AT1G05350//ATECI1//AT1G24350 GO:0046942 carboxylic acid transport BP 0.00808891182874223 AtmtOM64//AAP3//AT5G17630//AT5G15870//AT5G44390//AT5G41800//ATGLR2.5//LAX1//CRK13//AT3G20650//AT3G30390//GLP5//AT1G05350//ATECI1//AT1G24350 GO:0006354 DNA-templated transcription, elongation BP 0.00831291464362331 RPS15//RPS11//RPL22//RPS4//RPS16//PSBK//AT4G37660//RPL12-B//AT2G03130 GO:0015711 organic anion transport BP 0.00880352369780183 AtmtOM64//AAP3//AT5G17630//AT5G15870//AT5G44390//AT5G41800//ATGLR2.5//LAX1//CRK13//AT3G20650//AT3G30390//AT1G68710//GLP5//AT1G05350//ATECI1//AT1G24350 GO:0006865 amino acid transport BP 0.0104345912261288 AtmtOM64//AAP3//AT5G15870//AT5G44390//AT5G41800//ATGLR2.5//LAX1//CRK13//AT3G20650//AT3G30390//GLP5//AT1G05350//ATECI1//AT1G24350 GO:0009966 regulation of signal transduction BP 0.0148894192259387 AtELP3//ATMYB33//AT4G40050//ABCB2//ATMKP2//AtPFA-DSP3//CDG1//AHP1//ATERF3 GO:0023051 regulation of signaling BP 0.0148894192259387 AtELP3//ATMYB33//AT4G40050//ABCB2//ATMKP2//AtPFA-DSP3//CDG1//AHP1//ATERF3 GO:0009267 cellular response to starvation BP 0.0169247476526246 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:0009742 brassinosteroid mediated signaling pathw... BP 0.0176089128089015 HERK1//CDG1//AIF1//BRL2 GO:0043401 steroid hormone mediated signaling pathw... BP 0.0176089128089015 HERK1//CDG1//AIF1//BRL2 GO:0048545 response to steroid hormone BP 0.0176089128089015 HERK1//CDG1//AIF1//BRL2 GO:0071367 cellular response to brassinosteroid sti... BP 0.0176089128089015 HERK1//CDG1//AIF1//BRL2 GO:0071383 cellular response to steroid hormone sti... BP 0.0176089128089015 HERK1//CDG1//AIF1//BRL2 GO:0034470 ncRNA processing BP 0.0180380246719237 EMB2247//ATNUC-L1//AtELP3//AT5G17660//AT5G11480//LHCB4.1//AT3G11964//AT3G18680//ABCI6//AtRLG1//PDE343//AtTLP18.3//DRB1//AT2G35410//PSAP GO:0010646 regulation of cell communication BP 0.0186501941111377 AtELP3//ATMYB33//AT4G40050//ABCB2//ATMKP2//AtPFA-DSP3//CDG1//AHP1//ATERF3 GO:0006563 L-serine metabolic process BP 0.0232316026585202 EDA9//AtSHMT3//PSP GO:0007186 G-protein coupled receptor signaling pat... BP 0.0232316026585202 ATGLR2.5//AtWDR5a//AT4G40050 GO:0042594 response to starvation BP 0.0245082242077388 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:0031669 cellular response to nutrient levels BP 0.0257686952927117 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:0006664 glycolipid metabolic process BP 0.0289936761167946 AT5G17250//AT4G31240//AT4G23000//AT3G24180//AT3G03610//AT1G08310//AtPPsPase1 GO:0055076 transition metal ion homeostasis BP 0.0298975833141054 ATFP3//AtHEMA1//ACO3//AT2G28390//ATCDF1 GO:0009699 phenylpropanoid biosynthetic process BP 0.0300155999782935 ADT5//ATCHS//ATMDAR2//ATTT12//FAR5//LACS4//CCOAMT//AT1G13930 GO:0097306 cellular response to alcohol BP 0.0306903138691794 UBA2A//ATMYB33//AT3G54150//HERK1//AtPFA-DSP3//CDG1//AIF1//AT3G03610//AtRLP11//RPK1//ATPEPR1//BRL2//AT2G20010//CYP94C1 GO:0006302 double-strand break repair BP 0.0313582995833661 FAR1//ATRPA70B//TRFL10//CYC1//ATMSH2//ATCSLD5//ATDSS1(I) GO:1903509 liposaccharide metabolic process BP 0.033848869318318 AT5G17250//AT4G31240//AT4G23000//AT3G24180//AT3G03610//AT1G08310//AtPPsPase1 GO:0010212 response to ionizing radiation BP 0.0345401512752406 FAR1//TRFL10//ATCKA2//CYC1//AT1G27900//ATDSS1(I) GO:0048193 Golgi vesicle transport BP 0.0381858938119554 TUA6//AT4G14160//AtmtOM64//AAP3//AT5G15870//CID6//AT5G11490//PMP//ACT8//GLP5//AT1G05350//AT2G28370//AT2G20010//ALG3 GO:0046365 monosaccharide catabolic process BP 0.0451127198577276 AT4G14160//AT3G60750//ATCAP1//ATSEC8//AQC1//AT1G17160//AT2G45060 GO:0031667 response to nutrient levels BP 0.0467593349160537 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:0031668 cellular response to extracellular stimu... BP 0.0467593349160537 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:0071496 cellular response to external stimulus BP 0.0467593349160537 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:1902532 negative regulation of intracellular sig... BP 0.0477998094917948 ATMKP2//AtPFA-DSP3//ATERF3 GO:0009556 microsporogenesis BP 0.051452698137943 AtFAR6//FAR5//MS5//ATWRKY19 GO:0015824 proline transport BP 0.051452698137943 AT5G41800//AT3G20650//ATECI1//AT1G24350 GO:0009247 glycolipid biosynthetic process BP 0.0514752942968209 AT5G17250//AT4G31240//AT4G23000//AT3G03610//AT1G08310//AtPPsPase1 GO:0022613 ribonucleoprotein complex biogenesis BP 0.0562567013104391 EMB2247//ATNUC-L1//AT5G11480//LHCB4.1//AT3G11964//AT3G18680//ABCI6//AT3G09200//PDE343//AT1G54380//AtTLP18.3//RPL24A//AT2G35410//PSAP//AT2G45710 GO:0031399 regulation of protein modification proce... BP 0.0568498407108052 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3//AIF1//ABCI6//PDE343//AtTLP18.3//PSAP//AtRLP23 GO:0044550 secondary metabolite biosynthetic proces... BP 0.0569377704540584 IMS3//ADT5//ATCHS//2-Cys//ATMDAR2//ATTT12//FAR5//LACS4//AT4G13840//ABCI6//CCOAMT//AT1G13930//AtTLP18.3//FMO GO:0048236 plant-type spore development BP 0.0571600370096202 AtFAR6//FAR5//MS5//ATWRKY19 GO:0046283 anthocyanin-containing compound metaboli... BP 0.0579161335973086 MYC3//ATCHS//AHP1//AHK4//AT2G03310 GO:0006643 membrane lipid metabolic process BP 0.0596219552568983 AT5G17250//AT4G31240//AT4G23000//AT3G24180//AT3G03610//SAG18//AT1G08310//AtPPsPase1 GO:0040007 growth BP 0.0603152829483461 TUA6//AT4G14160//CYCA2;1//AtELP3//AT5G49990//cdc2cAt//ATEXP21//ATMYB33//AT3G60750//LAP3//HERK1//ATSYP72//CYC1//ATCAP1//AT4G33560//AT4G03620//ARPC5//ATEXP17//AT3G15180//PMP//CDG1//AHP1//AT3G09550//TPR10//ATCSLC06//ATSEC8//AQC1//ACT8//BRL2//AT2G28370//AT2G07020 GO:0000226 microtubule cytoskeleton organization BP 0.0611947327737821 TUA6//AT4G17000//CHR17//CYC1//ATSYP81//AT3G10310//ATCSLD5//AT1G65010//AT1G55460//AUG2 GO:0010207 photosystem II assembly BP 0.0629882405445737 PSBK//ABCI6//AT1G29700//AT1G63610//PDE343//LPA3//AtTLP18.3//PSAP GO:0009804 coumarin metabolic process BP 0.063191998901093 ADT5//ATMDAR2//LACS4//AT1G13930 GO:0009805 coumarin biosynthetic process BP 0.063191998901093 ADT5//ATMDAR2//LACS4//AT1G13930 GO:0015804 neutral amino acid transport BP 0.063191998901093 AT5G41800//AT3G20650//ATECI1//AT1G24350 GO:0010305 leaf vascular tissue pattern formation BP 0.0634033408591141 ATNUC-L1//DRB1//BRL2 GO:0031537 regulation of anthocyanin metabolic proc... BP 0.0634033408591141 ATCHS//AHP1//AHK4 GO:0006888 ER to Golgi vesicle-mediated transport BP 0.0636987835135622 AT4G14160//AtmtOM64//AAP3//AT5G15870//GLP5//AT1G05350 GO:0019220 regulation of phosphate metabolic proces... BP 0.0647841488978614 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3//AIF1//ABCI6//PDE343//AtTLP18.3//PSAP//AtRLP23 GO:0051174 regulation of phosphorus metabolic proce... BP 0.0647841488978614 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3//AIF1//ABCI6//PDE343//AtTLP18.3//PSAP//AtRLP23 GO:0043069 negative regulation of programmed cell d... BP 0.0664708383743967 AtmtOM64//AAP3//ATMKP2//AtRLP11//RPK1//ATSZF2//AT2G20010//LURP1 GO:0032268 regulation of cellular protein metabolic... BP 0.0694137305386263 ATREV7//CYCA2;1//CYC1//IAA27//ATMKP2//CYCP2;1//AtPFA-DSP3//AIF1//ABCI6//PDE343//AtTLP18.3//PSAP//AtRLP23 GO:0006399 tRNA metabolic process BP 0.0700651615709462 EMB2247//AtELP3//AT5G17660//AT5G11480//AT3G18680//AtRLG1//PDE343 GO:0009611 response to wounding BP 0.0707876238802808 AT5G04250//AtFAR6//ADT5//ATCHS//ATMDAR2//FAR5//LACS4//AGC2//AT3G03610//ATBSMT1//RPK1//ATPEPR1//AT1G13930//CYP94C1 GO:0042743 hydrogen peroxide metabolic process BP 0.0720160502658491 AT5G39890//AT5G39730//2-Cys//ATMDAR2//AT3G60750//AT3G44190//AT4G33560//AIF1//MDAR6//AT1G13930//AOAT1//LURP1//AtRLP23 GO:0055065 metal ion homeostasis BP 0.0727179216468809 ATFP3//ATGLR2.5//AtHEMA1//ACO3//AT2G28390//ATCDF1 GO:0051321 meiotic cell cycle BP 0.0734063753911209 ATE2FB//AtFAR6//CHR17//FAR5//CYC1//MS5//ATWRKY19//ATMSH2//AT3G09360//AT1G27900//ATDSS1(I) GO:0060548 negative regulation of cell death BP 0.073786521303003 AtmtOM64//AAP3//ATMKP2//AtRLP11//RPK1//ATSZF2//AT2G20010//LURP1 GO:0006364 rRNA processing BP 0.0764351407938912 EMB2247//ATNUC-L1//AT5G11480//LHCB4.1//AT3G11964//AT3G18680//ABCI6//PDE343//AtTLP18.3//AT2G35410//PSAP GO:0009991 response to extracellular stimulus BP 0.0774093754656329 FBX2//AT1G51840//PIP2;5//AT3G50210//PCK1//AT4G31240//AT4G23000//AT3G03610//AT1G35350//AT1G08310//AtPPsPase1//AHK4//SNRK2-9 GO:0006007 glucose catabolic process BP 0.0774878393410723 AT4G14160//AT3G60750//ATCAP1//ATSEC8//AQC1//AT2G45060 GO:0071900 regulation of protein serine/threonine k... BP 0.0789300926975858 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3 GO:0006497 protein lipidation BP 0.0793440429227237 AT4G14360//AT5G15870//AT5G25100//AT5G66290//ATHIR1//cdc2cAt//AT5G17250//AT5G06260//AT5G03640//AKT5//AT3G27930//RGLG1//RPK1//GLP5//AT1G05350//AT2G20010 GO:0042158 lipoprotein biosynthetic process BP 0.0793440429227237 AT4G14360//AT5G15870//AT5G25100//AT5G66290//ATHIR1//cdc2cAt//AT5G17250//AT5G06260//AT5G03640//AKT5//AT3G27930//RGLG1//RPK1//GLP5//AT1G05350//AT2G20010 GO:0016072 rRNA metabolic process BP 0.0795417144509541 EMB2247//ATNUC-L1//AT5G11480//LHCB4.1//AT3G11964//AT3G18680//ABCI6//PDE343//AtTLP18.3//AT2G35410//PSAP GO:0051246 regulation of protein metabolic process BP 0.0802008946174078 ATREV7//CYCA2;1//CYC1//IAA27//ATMKP2//CYCP2;1//AtPFA-DSP3//AIF1//ABCI6//PDE343//AtTLP18.3//PSAP//AtRLP23 GO:0016049 cell growth BP 0.0817345754010991 TUA6//AT4G14160//CYCA2;1//cdc2cAt//ATEXP21//AT3G60750//LAP3//HERK1//ATSYP72//CYC1//ATCAP1//AT4G03620//ARPC5//ATEXP17//AT3G15180//PMP//AHP1//AT3G09550//TPR10//ATCSLC06//ATSEC8//ACT8//AT2G28370//AT2G07020 GO:0042157 lipoprotein metabolic process BP 0.0818160873985261 AT4G14360//AT5G15870//AT5G25100//AT5G66290//ATHIR1//cdc2cAt//AT5G17250//AT5G06260//AT5G03640//AKT5//AT3G27930//RGLG1//RPK1//GLP5//AT1G05350//AT2G20010 GO:0009968 negative regulation of signal transducti... BP 0.0831872617828075 AT4G40050//ATMKP2//AtPFA-DSP3//ATERF3 GO:0010648 negative regulation of cell communicatio... BP 0.0831872617828075 AT4G40050//ATMKP2//AtPFA-DSP3//ATERF3 GO:0023057 negative regulation of signaling BP 0.0831872617828075 AT4G40050//ATMKP2//AtPFA-DSP3//ATERF3 GO:0006400 tRNA modification BP 0.0832698565535714 AtELP3//AT5G17660 GO:0043407 negative regulation of MAP kinase activi... BP 0.0832698565535714 ATMKP2//AtPFA-DSP3 GO:0043409 negative regulation of MAPK cascade BP 0.0832698565535714 ATMKP2//AtPFA-DSP3 GO:0006820 anion transport BP 0.0854912228800147 AtmtOM64//AT1G51840//AAP3//AT5G17630//AT5G15870//AT5G44390//AT5G41800//ATGLR2.5//LAX1//CRK13//AT3G20650//AT3G30390//AHP1//AT1G35350//AT1G68710//AHK4//GLP5//AT1G05350//ATECI1//AT1G24350//SNRK2-9 GO:0009733 response to auxin BP 0.0869749230070203 ATE2FB//AtELP3//AT5G50120//ATCHS//IAA27//ABCB2//SGT1A//ATNUP160//RPK1//AQC1//IAA34//ACO3//DRB1//BRL2//CYP94C1 GO:0051716 cellular response to stimulus BP 0.088932978754964 RPS16//FAR1//TUA6//AT4G16900//AT1G57850//AtmtOM64//FBX2//UBA2A//ATREV7//AT1G51840//AAP3//AT5G15870//EMB2782//ABA1//SRR1//AtELP3//AT5G39890//AT5G18350//ATGLR2.5//ATRPA70B//ATMYB33//2-Cys//TRFL10//PIP2;5//AT3G54150//AT3G51560//ATCKA2//AT3G50210//AtWDR5a//HERK1//AT4G40050//PCK1//CYC1//AT4G33560//AT4G31240//GGT3//ABCB2//SGT1A//CRK13//AT4G23440//AT4G23000//AtRLP48//ATWRKY19//AT4G08190//CLS//AT4G03010//AT4G02180//ATMKP2//AtPFA-DSP3//ATMSH2//CDG1//ATMPK19//AHP1//AIF1//TPR10//AT3G03610//AT1G35350//AT1G27900//ASHH1//AtRLP11//RPK1//AT1G17615//AT1G62950//AT1G08310//ATERF3//ATCSLD5//ATPEPR1//AtPPsPase1//CRWN2//ATDSS1(I)//ACO3//ATSZF2//AGL61//AHK4//AT1G61740//GLP5//DRB1//BRL2//AT2G20010//LURP1//CYP94C1//AT2G03280//SNRK2-9//AtRLP23 GO:0042254 ribosome biogenesis BP 0.0895475216945355 EMB2247//ATNUC-L1//AT5G11480//LHCB4.1//AT3G11964//AT3G18680//ABCI6//AT3G09200//PDE343//AtTLP18.3//RPL24A//AT2G35410//PSAP//AT2G45710 GO:0046916 cellular transition metal ion homeostasi... BP 0.0905649096326488 ATFP3//AT2G28390//ATCDF1 GO:0043549 regulation of kinase activity BP 0.0907767455976862 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3 GO:0045859 regulation of protein kinase activity BP 0.0907767455976862 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3 GO:0006863 purine nucleobase transport BP 0.092827899371869 AT5G17630//ATKCO3//ATTT12//ATCSLG1//AT3G19940//ATPUP14 GO:0015851 nucleobase transport BP 0.092827899371869 AT5G17630//ATKCO3//ATTT12//ATCSLG1//AT3G19940//ATPUP14 GO:0048519 negative regulation of biological proces... BP 0.0956863658142178 RPS16//ATESD4//AtmtOM64//ATREV7//AAP3//EMB2782//AT5G58840//CHR17//ATRPA70B//ATMYB33//2-Cys//ESP4//AT4G40050//AT4G31240//AT4G23000//ATMKP2//ATNUP160//AtPFA-DSP3//ATMSH2//AT3G14240//AIF1//AT3G09360//AT3G10310//RGLG1//AtRLP11//RPK1//AQC1//AT1G32950//AT1G44780//AT1G08310//ATERF3//AtPPsPase1//CRWN2//ATSZF2//DRB1//AT2G20010//LURP1//AT2G03280//AtRLP23 GO:0019374 galactolipid metabolic process BP 0.0970252560779581 AT4G31240//AT4G23000//AT3G03610//AT1G08310//AtPPsPase1 GO:0019375 galactolipid biosynthetic process BP 0.0970252560779581 AT4G31240//AT4G23000//AT3G03610//AT1G08310//AtPPsPase1 GO:0043090 amino acid import BP 0.0970252560779581 AtmtOM64//AAP3//AT5G15870//GLP5//AT1G05350 GO:0019320 hexose catabolic process BP 0.0982798925321498 AT4G14160//AT3G60750//ATCAP1//ATSEC8//AQC1//AT2G45060 GO:0006882 cellular zinc ion homeostasis BP 0.0985706128781878 AT2G28390//ATCDF1 GO:0043405 regulation of MAP kinase activity BP 0.0985706128781878 ATMKP2//AtPFA-DSP3 GO:0043408 regulation of MAPK cascade BP 0.0985706128781878 ATMKP2//AtPFA-DSP3 GO:0051259 protein oligomerization BP 0.0985706128781878 ATKCO3//AtPPsPase1 GO:1901136 carbohydrate derivative catabolic proces... BP 0.100531292024304 GPDHC1//AT3G24180//NSH1 GO:1902531 regulation of intracellular signal trans... BP 0.100531292024304 ATMKP2//AtPFA-DSP3//ATERF3 GO:0001932 regulation of protein phosphorylation BP 0.103485623214853 CYCA2;1//CYC1//ATMKP2//CYCP2;1//AtPFA-DSP3