GOID TERM ONTOLOGY pValue Genes GO:0044763 single-organism cellular process BP 0.00104429329248937 AtG3Pp4//BHLH101//AT5G25510//ATRMI1//ATGT18//AALP//APUM18//ATTRP1//ATPLC//AtNMNAT//AT5G55400//AT5G50330//AT5G48900//AT5G45210//AT5G43030//AT5G37170//ABIL3//PYD2//ATCM2//AT5G10420//ATDGK1//ATASP38//ALG10//ATTIF3K1//CSY5//AT3G55420//PLA//ATGCP4//IRX15//CDC2//JK224//AT3G45850//AT3G45410//AT4G34600//KCS16//AT4G32120//PRXR1//CCS52A2//AT4G10000//Prx37//AT1G16760//AT1G50950//DRT100//AT3G12210//AtLIG6//ABCE1//HCF101//ATNCED3//AT3G15570//GPK1//AT3G26560//YSL6//AT3G15940//AT3G20820//DSPTP1//FAB1B//SDP6//AT3G01190//ASG5//AT1G77730//AT1G71090//UNE2//ATKTI1//RKL1//ATFUT12//ATCCMH//AT1G13970//AT1G65000//ESP//KUP10//ATGLK1//ATLUP1//ARPC3//AT2G17650//ATCYCD1;1//BSU1//ATPIN7//AT1G27190//OTLD1//AT2G24360//ATGSL03//AT2G35733//ROPGAP3//AT2G37670//AIR9//ZFP8 GO:0010359 regulation of anion channel activity BP 0.00228239251260872 JK224//AT3G01190//AT1G13970 GO:1903959 regulation of anion transmembrane transp... BP 0.00228239251260872 JK224//AT3G01190//AT1G13970 GO:0022898 regulation of transmembrane transporter ... BP 0.00270712293976873 JK224//AT3G01190//AT1G13970 GO:0032409 regulation of transporter activity BP 0.00270712293976873 JK224//AT3G01190//AT1G13970 GO:0032412 regulation of ion transmembrane transpor... BP 0.00270712293976873 JK224//AT3G01190//AT1G13970 GO:0034762 regulation of transmembrane transport BP 0.00270712293976873 JK224//AT3G01190//AT1G13970 GO:0034765 regulation of ion transmembrane transpor... BP 0.00270712293976873 JK224//AT3G01190//AT1G13970 GO:0044070 regulation of anion transport BP 0.00426090268824253 JK224//AT3G01190//AT1G13970 GO:0051640 organelle localization BP 0.00504638769531902 ATPLC//AT5G55400//JK224//HCF101//ATGLK1 GO:0071901 negative regulation of protein serine/th... BP 0.00554339586203175 CDC2//DSPTP1//ATCYCD1;1 GO:0044699 single-organism process BP 0.00585106417291507 AtG3Pp4//IAA14//BHLH101//AT5G33370//AT5G25510//APK4//ATRMI1//ATGT18//AALP//APUM18//ATTRP1//ATUCP2//ATPLC//AtNMNAT//AT5G55400//AGL72//AT5G50330//AT5G48900//AT5G45210//AT5G44400//AT5G43030//AT5G37170//ABIL3//PYD2//ATCM2//AT5G10420//ATDGK1//AT5G04610//ATASP38//ALG10//ATTIF3K1//CSY5//AT3G55720//AT3G55420//PLA//ATGCP4//IRX15//CDC2//JK224//AT3G45850//AT3G45410//TET3//AT4G34600//KCS16//AT4G32120//AT4G23730//PRXR1//AtYUC2//CCS52A2//AT4G10000//Prx37//AT1G16760//AT1G50950//DRT100//AT3G12210//AtLIG6//BR6OX2//ABCE1//HCF101//ATNCED3//AT3G15570//GPK1//AT3G26560//ALMT9//YSL6//AT3G15940//AT3G20820//DSPTP1//FAB1B//SDP6//AT3G01190//ASG5//TSA1//AT1G77730//AT1G71090//UNE2//ATKTI1//RKL1//ATFUT12//AT1G15600//AT1G11470//ATCCMH//AT1G13970//AT1G65000//ESP//KUP10//ATGLK1//ATLUP1//ARPC3//AT2G17650//ATCYCD1;1//BSU1//ATPIN7//AT1G27190//OTLD1//AT2G24360//ATGSL03//AT2G35733//ROPGAP3//AT2G37670//AIR9//CYP76C1//ZFP8 GO:0065009 regulation of molecular function BP 0.00614552173772398 CDC2//JK224//HCF101//DSPTP1//AT3G01190//AT1G02300//AT1G13970//ATCYCD1;1 GO:0006469 negative regulation of protein kinase ac... BP 0.00626220574366377 CDC2//DSPTP1//ATCYCD1;1 GO:0033673 negative regulation of kinase activity BP 0.00626220574366377 CDC2//DSPTP1//ATCYCD1;1 GO:0051348 negative regulation of transferase activ... BP 0.00626220574366377 CDC2//DSPTP1//ATCYCD1;1 GO:0001933 negative regulation of protein phosphory... BP 0.00703409199413791 CDC2//DSPTP1//ATCYCD1;1 GO:0031400 negative regulation of protein modificat... BP 0.00703409199413791 CDC2//DSPTP1//ATCYCD1;1 GO:0042326 negative regulation of phosphorylation BP 0.00703409199413791 CDC2//DSPTP1//ATCYCD1;1 GO:0010563 negative regulation of phosphorus metabo... BP 0.00785996919423967 CDC2//DSPTP1//ATCYCD1;1 GO:0045936 negative regulation of phosphate metabol... BP 0.00785996919423967 CDC2//DSPTP1//ATCYCD1;1 GO:0006820 anion transport BP 0.00838059493812219 AtG3Pp4//AT5G04610//JK224//AT3G45410//ALMT9//SDP6//AT3G01190//UNE2//ATKTI1//AT1G11470//AT1G13970 GO:0019220 regulation of phosphate metabolic proces... BP 0.0112819816421531 ATPLC//CDC2//DSPTP1//ATGLK1//ATCYCD1;1//ZFP8 GO:0031399 regulation of protein modification proce... BP 0.0112819816421531 ATPLC//CDC2//DSPTP1//ATGLK1//ATCYCD1;1//ZFP8 GO:0051174 regulation of phosphorus metabolic proce... BP 0.0112819816421531 ATPLC//CDC2//DSPTP1//ATGLK1//ATCYCD1;1//ZFP8 GO:0015824 proline transport BP 0.0128254504762835 AT5G04610//SDP6//AT1G11470 GO:0032535 regulation of cellular component size BP 0.0148802143074207 AT5G48900//CCS52A2//ARPC3//ATPIN7//AIR9 GO:0090066 regulation of anatomical structure size BP 0.0148802143074207 AT5G48900//CCS52A2//ARPC3//ATPIN7//AIR9 GO:0010411 xyloglucan metabolic process BP 0.0149602021402789 ATGT18//ATXYL1 GO:0015804 neutral amino acid transport BP 0.0152125924199064 AT5G04610//SDP6//AT1G11470 GO:0071900 regulation of protein serine/threonine k... BP 0.0152125924199064 CDC2//DSPTP1//ATCYCD1;1 GO:0016310 phosphorylation BP 0.0163446266497188 ATPLC//AT5G50330//CDC2//JK224//AT3G45410//AT1G16760//GPK1//DSPTP1//ASG5//RKL1//AT1G52540//AT1G48220//ATGLK1//AT2G21480//ATCYCD1;1//AT1G27190//AT2G24360//ZFP8 GO:0043549 regulation of kinase activity BP 0.0178336593578893 CDC2//DSPTP1//ATCYCD1;1 GO:0045859 regulation of protein kinase activity BP 0.0178336593578893 CDC2//DSPTP1//ATCYCD1;1 GO:0032269 negative regulation of cellular protein ... BP 0.0192325131076986 CDC2//DSPTP1//ATCYCD1;1 GO:0051248 negative regulation of protein metabolic... BP 0.0192325131076986 CDC2//DSPTP1//ATCYCD1;1 GO:0098656 anion transmembrane transport BP 0.0192325131076986 JK224//AT3G01190//AT1G13970 GO:0009926 auxin polar transport BP 0.0197314159256344 AT5G48900//AT1G71090//ATPIN7//ROPGAP3 GO:0001932 regulation of protein phosphorylation BP 0.0206904479581672 CDC2//DSPTP1//ATCYCD1;1 GO:0051338 regulation of transferase activity BP 0.0206904479581672 CDC2//DSPTP1//ATCYCD1;1 GO:0060918 auxin transport BP 0.020751511257294 AT5G48900//AT1G71090//ATPIN7//ROPGAP3 GO:0006468 protein phosphorylation BP 0.0208867336389322 AT5G50330//CDC2//JK224//AT3G45410//AT1G16760//GPK1//DSPTP1//ASG5//RKL1//AT1G52540//AT1G48220//AT2G21480//ATCYCD1;1//AT1G27190//AT2G24360 GO:0009914 hormone transport BP 0.0218034982886834 AT5G48900//AT1G71090//ATPIN7//ROPGAP3 GO:0044092 negative regulation of molecular functio... BP 0.0218034982886834 CDC2//JK224//DSPTP1//ATCYCD1;1 GO:0007154 cell communication BP 0.0220450362714259 BHLH101//AT5G25510//ATTRP1//ATPLC//AT5G45210//AT5G43030//PYD2//ATDGK1//CDC2//JK224//AT3G45410//CCS52A2//DRT100//AT3G20820//DSPTP1//FAB1B//AT3G01190//ASG5//AT1G77730//RKL1//ATGLK1//AT2G17650//BSU1//AT1G27190//AT2G37670//ZFP8 GO:0009688 abscisic acid biosynthetic process BP 0.0230703006042449 ATNCED3//AT2G35733 GO:0043289 apocarotenoid biosynthetic process BP 0.0230703006042449 ATNCED3//AT2G35733 GO:0045736 negative regulation of cyclin-dependent ... BP 0.0230703006042449 CDC2//ATCYCD1;1 GO:1902645 tertiary alcohol biosynthetic process BP 0.0230703006042449 ATNCED3//AT2G35733 GO:0008361 regulation of cell size BP 0.0237838315362079 AT5G48900//CCS52A2//ATPIN7 GO:0042325 regulation of phosphorylation BP 0.0237838315362079 CDC2//DSPTP1//ATCYCD1;1 GO:0016106 sesquiterpenoid biosynthetic process BP 0.026094389627357 ATNCED3//AT2G35733 GO:0065008 regulation of biological quality BP 0.0279864988231763 AtG3Pp4//BHLH101//AT5G48900//ATTIF3K1//PRXR1//AtYUC2//CCS52A2//AT4G10000//Prx37//AT1G50950//BR6OX2//AT1G71090//ARPC3//ATPIN7//ROPGAP3//AIR9 GO:0006928 movement of cell or subcellular componen... BP 0.0287966401898714 ATPLC//AT5G55400//AT3G45850//AT1G16760 GO:0015706 nitrate transport BP 0.028833997578936 AtG3Pp4//AT3G45410//AT3G01190//UNE2//ATKTI1 GO:0009725 response to hormone BP 0.0289783270915532 IAA14//AALP//ATTRP1//ATPLC//AT3G61900//AT3G45410//SAUR9//ATNCED3//GPK1//ASG5//ERD14//ESP//ATGLK1//AT2G21200//AT2G17650//BSU1//ARF11//AIR9//ZFP8 GO:0009987 cellular process BP 0.0314456412751153 AtG3Pp4//IAA14//AT1G56610//BHLH101//AGL101//AtDNMT2//AT5G25510//APK4//ATRMI1//AT5G62750//ATGT18//AALP//APUM18//ATTRP1//ATUCP2//ATPLC//AtNMNAT//AT5G55400//AGL72//AT5G50330//AT5G48900//AT5G45210//AT5G43030//AT5G37170//ABIL3//PYD2//ATCM2//AT5G10420//ATDGK1//ATASP38//ALG10//ATTIF3K1//CSY5//AT3G55720//AT3G55420//PLA//ATGCP4//BEH1//IRX15//CDC2//JK224//AT3G45850//AT3G45410//AT4G34600//KCS16//AT4G32120//PRXR1//XTH29//AtYUC2//CCS52A2//AT4G10000//Prx37//AT1G16760//AT1G50950//DRT100//AT3G12210//AtLIG6//ABCE1//HCF101//ATNCED3//AT3G15570//GPK1//AT3G26560//YSL6//AT3G15940//AT3G20820//DSPTP1//FAB1B//SDP6//AT3G01190//ASG5//AT1G77730//AT1G71090//UNE2//ATKTI1//RKL1//ATFUT12//AT1G02830//AT1G52540//ATPME2//ATXYL1//AT1G48220//ATCCMH//AT1G13970//AT1G65000//ESP//KUP10//ATGLK1//AT2G21480//ATLUP1//ARPC3//AT2G17650//ATCYCD1;1//BSU1//ATPIN7//AT1G27190//ARF11//OTLD1//AT2G24360//ATGSL03//AT2G35733//ROPGAP3//AT2G37670//AIR9//ZFP8 GO:0007165 signal transduction BP 0.0321827259581684 AT5G25510//ATTRP1//ATPLC//AT5G45210//AT5G43030//ATDGK1//JK224//CCS52A2//DRT100//AT3G20820//DSPTP1//FAB1B//ASG5//AT1G77730//RKL1//ATGLK1//AT2G17650//BSU1//AT1G27190//AT2G37670//ZFP8 GO:0043562 cellular response to nitrogen levels BP 0.0325895975305177 PYD2//CDC2 GO:0009687 abscisic acid metabolic process BP 0.0360498475222078 ATNCED3//AT2G35733 GO:0043288 apocarotenoid metabolic process BP 0.0360498475222078 ATNCED3//AT2G35733 GO:1902644 tertiary alcohol metabolic process BP 0.0360498475222078 ATNCED3//AT2G35733 GO:0009902 chloroplast relocation BP 0.0364673266147888 JK224//HCF101//ATGLK1 GO:0019750 chloroplast localization BP 0.0364673266147888 JK224//HCF101//ATGLK1 GO:0030048 actin filament-based movement BP 0.0364673266147888 ATPLC//AT5G55400//AT1G16760 GO:0051644 plastid localization BP 0.0364673266147888 JK224//HCF101//ATGLK1 GO:0051667 establishment of plastid localization BP 0.0364673266147888 JK224//HCF101//ATGLK1 GO:0032268 regulation of cellular protein metabolic... BP 0.0372542426933097 ATPLC//CDC2//DSPTP1//ATGLK1//ATCYCD1;1//ZFP8 GO:0048523 negative regulation of cellular process BP 0.0398710637163414 IAA14//AT1G56610//ATPLC//ATTIF3K1//CDC2//JK224//CCS52A2//DSPTP1//ATCYCD1;1//OTLD1 GO:0051656 establishment of organelle localization BP 0.0406149818441181 JK224//HCF101//ATGLK1 GO:0051246 regulation of protein metabolic process BP 0.0413609332252169 ATPLC//CDC2//DSPTP1//ATGLK1//ATCYCD1;1//ZFP8 GO:0006714 sesquiterpenoid metabolic process BP 0.0433694624121046 ATNCED3//AT2G35733 GO:0044700 single organism signaling BP 0.0449657580210831 AT5G25510//ATTRP1//ATPLC//AT5G45210//AT5G43030//ATDGK1//JK224//CCS52A2//DRT100//AT3G20820//DSPTP1//FAB1B//ASG5//AT1G77730//RKL1//ATGLK1//AT2G17650//BSU1//AT1G27190//AT2G37670//ZFP8 GO:0009719 response to endogenous stimulus BP 0.0449833050629555 IAA14//AALP//ATTRP1//ATPLC//AT3G61900//AT3G45410//SAUR9//ATNCED3//GPK1//ASG5//ERD14//ESP//ATGLK1//AT2G21200//AT2G17650//BSU1//ARF11//AIR9//ZFP8 GO:0023052 signaling BP 0.0458730395358731 AT5G25510//ATTRP1//ATPLC//AT5G45210//AT5G43030//ATDGK1//JK224//CCS52A2//DRT100//AT3G20820//DSPTP1//FAB1B//ASG5//AT1G77730//RKL1//ATGLK1//AT2G17650//BSU1//AT1G27190//AT2G37670//ZFP8 GO:0065007 biological regulation BP 0.0460553623904777 AtG3Pp4//IAA14//AT1G56610//BHLH101//AGL101//AtDNMT2//AT5G25510//ATTRP1//ATPLC//AGL72//AT5G48900//AT5G45210//AT5G43030//ATDGK1//ATTIF3K1//AT3G55720//ATGCP4//BEH1//CDC2//JK224//PRXR1//AtYUC2//CCS52A2//AT4G10000//Prx37//AT1G50950//DRT100//BR6OX2//HCF101//AT3G20820//DSPTP1//FAB1B//AT3G01190//AT1G02300//ASG5//AT1G77730//AT1G71090//RKL1//AT1G13970//ATGLK1//ARPC3//AT2G17650//ATCYCD1;1//BSU1//ATPIN7//AT1G27190//ARF11//OTLD1//ROPGAP3//AT2G37670//AIR9//ZFP8 GO:0050896 response to stimulus BP 0.0466729617354627 IAA14//BHLH101//AT5G25510//ATRMI1//AALP//ATTRP1//ATPLC//AGL72//AT5G45210//AT5G43030//PYD2//AT5G10420//ATDGK1//ALG10//ATTIF3K1//AT3G61900//AT3G55720//PLA//CDC2//JK224//AT3G45410//SAUR9//KCS16//PRXR1//CCS52A2//Prx37//AT1G16760//DRT100//AT3G12210//AtLIG6//ATNCED3//AT3G15570//GPK1//ALMT9//AT3G15940//AT3G20820//DSPTP1//FAB1B//AT3G01190//ASG5//TSA1//AT1G77730//ATKTI1//RKL1//ERD14//ATXYL1//ESP//ATGLK1//AT2G21200//AT2G17650//BSU1//ATPIN7//AT1G27190//ARF11//OTLD1//ROPGAP3//AT2G37670//AIR9//ZFP8 GO:0045786 negative regulation of cell cycle BP 0.0472187426949143 CDC2//ATCYCD1;1 GO:0051645 Golgi localization BP 0.0472187426949143 ATPLC//AT5G55400 GO:0051646 mitochondrion localization BP 0.0472187426949143 ATPLC//AT5G55400 GO:0060151 peroxisome localization BP 0.0472187426949143 ATPLC//AT5G55400 GO:0005975 carbohydrate metabolic process BP 0.0478411701445169 ATGT18//AALP//ATUCP2//AT5G50330//ALG10//CSY5//IRX15//AT4G32120//AT4G23730//XTH29//AT1G19170//HCF101//AT3G15570//AT3G26560//HGL1//SDP6//BGLU25//ATFUT12//PGA4//ATXYL1//ATPIN7//AT2G24360//ATGSL03 GO:0051716 cellular response to stimulus BP 0.0480744122444701 BHLH101//AT5G25510//ATRMI1//ATTRP1//ATPLC//AT5G45210//AT5G43030//PYD2//ATDGK1//ATTIF3K1//CDC2//JK224//AT3G45410//CCS52A2//DRT100//AT3G12210//AtLIG6//AT3G20820//DSPTP1//FAB1B//AT3G01190//ASG5//AT1G77730//RKL1//ATGLK1//AT2G17650//BSU1//AT1G27190//AT2G37670//ZFP8 GO:0031324 negative regulation of cellular metaboli... BP 0.051464620419539 IAA14//AT1G56610//ATTIF3K1//CDC2//DSPTP1//ATCYCD1;1//OTLD1 GO:0040007 growth BP 0.0532552340870705 AtNMNAT//AT5G48900//AT3G55720//ATGCP4//AT4G34600//CCS52A2//Prx37//AT1G16760//GPK1//AT3G01190//RKL1//ATPIN7//AIR9 GO:0006007 glucose catabolic process BP 0.059447834690198 ATGT18//ATUCP2//SDP6 GO:0000079 regulation of cyclin-dependent protein s... BP 0.0594665685226754 CDC2//ATCYCD1;1 GO:0055085 transmembrane transport BP 0.0608185016377739 AtG3Pp4//PYD2//AT5G10420//JK224//YSL6//AT3G01190//AT1G71090//UNE2//AT1G13970//KUP10//ATPIN7 GO:0021700 developmental maturation BP 0.0619332261958408 AT5G10420//GPK1//AT3G01190//ATPIN7//ROPGAP3//AIR9 GO:0009741 response to brassinosteroid BP 0.0620456836161219 IAA14//AT2G21200//BSU1 GO:0019320 hexose catabolic process BP 0.0620456836161219 ATGT18//ATUCP2//SDP6 GO:0042023 DNA endoreduplication BP 0.0620456836161219 CDC2//CCS52A2//ATCYCD1;1 GO:0044786 cell cycle DNA replication BP 0.0620456836161219 CDC2//CCS52A2//ATCYCD1;1 GO:0030029 actin filament-based process BP 0.0625704686111442 ATPLC//AT5G55400//AT1G16760//ARPC3//AIR9 GO:0010101 post-embryonic root morphogenesis BP 0.0637671184667117 IAA14//AIR9 GO:0010102 lateral root morphogenesis BP 0.0637671184667117 IAA14//AIR9 GO:0010440 stomatal lineage progression BP 0.0637671184667117 CDC2//ATCYCD1;1 GO:0007568 aging BP 0.0647084537296878 AALP//AT5G10420//TET3//ESP GO:0048468 cell development BP 0.0651200951604414 AtNMNAT//ABIL3//AT4G34600//CCS52A2//AT1G16760//GPK1//AT3G01190//ATPIN7//ROPGAP3//AIR9 GO:0071705 nitrogen compound transport BP 0.0660745243519775 AtG3Pp4//AT5G04610//AT3G45410//YSL6//SDP6//AT3G01190//UNE2//ATKTI1//AT1G15600//AT1G11470