GOID TERM ONTOLOGY pValue Genes GO:0010100 negative regulation of photomorphogenesi... BP 0.00190378629834405 BBX1//ATCUL4//SHW1//AtTHO6 GO:0000394 RNA splicing, via endonucleolytic cleava... BP 0.00267753330397008 ATSEN2//CBL//ARAC3//AT4G18930//AtTMN7//AtRLG1//FDM5//AT1G75510//TAF6B//ABH1 GO:0010099 regulation of photomorphogenesis BP 0.00356602644835409 BBX1//ATCUL4//SHW1//AtTHO6 GO:0045595 regulation of cell differentiation BP 0.00475194186357918 IFL//ATCUL4//CRN//ATHAM2//RPT2a//RST1//BUM//TOR//GRL//ATHB-14 GO:2000030 regulation of response to red or far red... BP 0.00756230960535909 BBX1//ATCUL4//SHW1//AtTHO6 GO:0009880 embryonic pattern specification BP 0.00979621277750346 ATCUL4//RST1//CHMP1B//TOR//ATHB-14 GO:0090332 stomatal closure BP 0.0102285215902781 ATHLECRK//FAB1B//ATNHX2 GO:0051093 negative regulation of developmental pro... BP 0.0108011622992298 BBX1//AtEMF2//ATCUL4//CRN//ATHAM2//RPT2a//SHW1//BUM//AIP1//AtTHO6 GO:0071705 nitrogen compound transport BP 0.0126644470007876 AAP2//AT5G19500//AT5G19640//AT5G15810//AtZIP2//ARR18//ATYSL3//AtRLP55//AT5G41800//CAT3//CRN//AT5G05400//ATHLECRK//AT3G58890//ACO2//AT4G20420//AtRLP47//AT4G11670//ATOPT7//AT3G27150//AQP1//AT1G71910//AT1G67640//ASG6//AT1G71680//AT1G68570//AT2G17760//AT1G09740//AtPTR6//AT2G20320//AT2G05600//AT2G39360 GO:0010072 primary shoot apical meristem specificat... BP 0.0150566652677833 IFL//ATCUL4//RST1//TOR//ATHB-14 GO:0016926 protein desumoylation BP 0.0169940102967488 ATCESA7//AT5G58980//AT5G24350//AT5G08560//CRK//AT1G43690//AT2G03200 GO:0042138 meiotic DNA double-strand break formatio... BP 0.0185998378468737 AT5G59700//AT5G08560//AT3G61340//ATATM//ATSPO11-1//TOR//ATHB-14 GO:0030036 actin cytoskeleton organization BP 0.0195665219266343 IFL//AT5G24350//CRN//ARAC3//ARP2//TOR//ARAC5//AT1G02080//ATXIE//GRL//ATHB-14 GO:0090305 nucleic acid phosphodiester bond hydroly... BP 0.0198973356920838 AT5G59700//AT5G08560//AT3G61340//ATATM//ATSPO11-1//TOR//AtCaN2//ATHB-14 GO:0007015 actin filament organization BP 0.0214347443895795 IFL//AT5G24350//CRN//ARAC3//ARP2//TOR//ARAC5//AT1G02080//GRL//ATHB-14 GO:0016197 endosomal transport BP 0.0224254176290837 FIP1//VPS26B//CHMP1B//AT1G20110 GO:0006396 RNA processing BP 0.0238516280391944 AT5G12280//FAR1//AT5G64270//ATSEN2//ATCUL4//ESP4//RRP41//CBL//ARAC3//AT4G18930//PAPS1//AtTMN7//AtRLG1//FDM5//AT1G75510//TAF6B//ABH1//AT1G10180//AT2G17930//CPFTSY//AtTHO6 GO:0016192 vesicle-mediated transport BP 0.0244098553581069 FIP1//AtOS9//AT5G57200//ATSGP1//AtMAPR5//ATSYP132//AT5G05010//AT3G60860//AT4G35380//AT4G34450//AT4G28570//VPS26B//AT4G11670//AT4G09930//ATSYP123//ATEXO70D3//ATPDI12//AT3G03610//CHMP1B//AT1G20110//AT1G17080//AT1G10730//ATVPS11//AT GO:0009788 negative regulation of abscisic acid-act... BP 0.0259185241239478 AHG3//AIP1//ATGGT-IB//AtTHO6 GO:1901420 negative regulation of response to alcoh... BP 0.0259185241239478 AHG3//AIP1//ATGGT-IB//AtTHO6 GO:0071702 organic substance transport BP 0.0265359207158401 FIP1//AAP2//AT5G19500//AT5G19640//AT5G15810//ARR18//ATYSL3//AtRLP55//ATSUC6//AT5G41800//CAT3//CRN//PYD2//AtPPa6//ATSYP132//AT5G05010//AT3G62560//ATHLECRK//AT3G58890//ARAC3//AT4G34450//VPS26B//cpHsc70-1//AT4G20420//AtRLP47//AT4G11670//ATOPT7//ATSYP123//AT3G28610//ALIS1//AQP1//ATTOC120//CHMP1B//PRO25//AT1G77550//AT1G71910//AT1G67640//ASG6//AT1G20110//OBP2//AT1G71680//AT1G68570//ATMLO2//AT1G17080//AT1G10730//ATVPS11//AT2G40270//ATMC1//AT//AT2G17760//ATSUC4//AtPTR6//AT2G20320//AT2G10940//AT2G20720//AIB//AT2G05600//CPFTSY//BP80-3;2 GO:0090421 embryonic meristem initiation BP 0.0274910133852526 IFL//ATCUL4//RST1//TOR//ATHB-14 GO:0007155 cell adhesion BP 0.0282396899325714 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0022610 biological adhesion BP 0.0282396899325714 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0007010 cytoskeleton organization BP 0.0313506240178695 IFL//AT5G50420//AT5G24350//PHS1//CRN//AT5G12150//ATHAM2//CUM2//ARAC3//AT4G34450//AtENODL15//ACO2//ARP2//TOR//ARAC5//ABH1//AT1G02080//ATXIE//AT2G17930//GRL//ATHB-14 GO:0048581 negative regulation of post-embryonic de... BP 0.0342592582881404 BBX1//AtEMF2//ATCUL4//SHW1//AIP1//AtTHO6 GO:0010118 stomatal movement BP 0.0354078639614933 AT5G65590//PHS1//ATHLECRK//ATCIPK6//FAB1B//ATNHX2//AHG3 GO:0048508 embryonic meristem development BP 0.0373778597341524 IFL//ATCUL4//RST1//TOR//ATHB-14 GO:0008033 tRNA processing BP 0.0382627202542675 AT5G15810//ATSEN2//AT4G18930//AtRLG1 GO:0040008 regulation of growth BP 0.0386583217920802 ATTCX2//IFL//AtMAPR5//CRN//RUL1//BAM2//AtENODL15//RPT2a//AT3G01810//TOR//AtPERK12//AT2G39360//ATHB-14 GO:0030838 positive regulation of actin filament po... BP 0.0408010690891405 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0045010 actin nucleation BP 0.0408010690891405 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0010017 red or far-red light signaling pathway BP 0.0430071381670615 FAR1//BBX1//HRB1//MED25 GO:0051241 negative regulation of multicellular org... BP 0.0436273315779341 BBX1//AtEMF2//ATCUL4//SHW1//AIP1//AtTHO6 GO:0031334 positive regulation of protein complex a... BP 0.0436874579260083 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0032273 positive regulation of protein polymeriz... BP 0.0436874579260083 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0009933 meristem structural organization BP 0.0439425252199283 IFL//EYE//ATCUL4//CRN//BAM2//RPT2a//RST1//BUM//TOR//ABH1//AT1G10180//GRL//ATHB-14 GO:0010090 trichome morphogenesis BP 0.0452377743352444 IFL//AT5G24350//CRN//ATATM//ARP2//TOR//AT1G02080//GRL//ATHB-14 GO:0008064 regulation of actin polymerization or de... BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0030832 regulation of actin filament length BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0030833 regulation of actin filament polymerizat... BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0032956 regulation of actin cytoskeleton organiz... BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0032970 regulation of actin filament-based proce... BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0044089 positive regulation of cellular componen... BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0051495 positive regulation of cytoskeleton orga... BP 0.0467023985750176 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0050665 hydrogen peroxide biosynthetic process BP 0.0470728885753064 ATCESA7//AT5G24350//AT5G08560//CRK//AT1G43690//AT2G03200 GO:0006464 cellular protein modification process BP 0.0473108972751103 FAR1//VRN2//RHS6//ATCESA7//AT5G35370//AT5G65530//AT5G63410//AT5G63080//AT5G59700//AT5G58980//AT5G57200//AT5G55560//AT5G53320//AtEMF2//ATCUL4//AT5G41730//AT5G39430//CAT3//AT5G24350//PHS1//AT5G18610//AT5G18190//AT5G17250//CRN//AT5G08560//AT5G05400//AT5G05010//RUL1//ACR2//AT5G01950//AT3G61960//ATHLECRK//AT3G55050//CRK//BAM2//ATATM//AT4G34450//AT4G32250//ATCIPK6//AT4G29050//RPT2a//ACO2//CRK17//ATTRANS11//AT4G11670//AT4G10730//CNX7//UBQ14//AT1G66830//AT3G19240//ATSPO11-1//AT3G17750//RST1//LSF1//AHG3//PRO25//ECT9//AT1G77550//AT1G67880//ASG6//AT1G72460//AT1G43690//PUB26//AT1G34320//AT1G10730//AT1G64700//ABH1//AT2G40270//AtCaN2//ATCYCD2;1//AGC1.7//AT1G67470//AT1G04700//AtPERK12//AT2G36810//AT2G03200//PTI1-4//CPFTSY//AT2G45920//AT2G39360//ATGGT-IB//ATHB-14//AtTHO6//AT2G35050 GO:0036211 protein modification process BP 0.0473108972751103 FAR1//VRN2//RHS6//ATCESA7//AT5G35370//AT5G65530//AT5G63410//AT5G63080//AT5G59700//AT5G58980//AT5G57200//AT5G55560//AT5G53320//AtEMF2//ATCUL4//AT5G41730//AT5G39430//CAT3//AT5G24350//PHS1//AT5G18610//AT5G18190//AT5G17250//CRN//AT5G08560//AT5G05400//AT5G05010//RUL1//ACR2//AT5G01950//AT3G61960//ATHLECRK//AT3G55050//CRK//BAM2//ATATM//AT4G34450//AT4G32250//ATCIPK6//AT4G29050//RPT2a//ACO2//CRK17//ATTRANS11//AT4G11670//AT4G10730//CNX7//UBQ14//AT1G66830//AT3G19240//ATSPO11-1//AT3G17750//RST1//LSF1//AHG3//PRO25//ECT9//AT1G77550//AT1G67880//ASG6//AT1G72460//AT1G43690//PUB26//AT1G34320//AT1G10730//AT1G64700//ABH1//AT2G40270//AtCaN2//ATCYCD2;1//AGC1.7//AT1G67470//AT1G04700//AtPERK12//AT2G36810//AT2G03200//PTI1-4//CPFTSY//AT2G45920//AT2G39360//ATGGT-IB//ATHB-14//AtTHO6//AT2G35050 GO:0010638 positive regulation of organelle organiz... BP 0.047749536646342 IFL//AT5G24350//CRN//AT5G08560//ATATM//TOR//AT1G02080//GRL//ATHB-14 GO:0019827 stem cell maintenance BP 0.0480672711010954 CRN//ATHAM2//RPT2a//BUM GO:0007049 cell cycle BP 0.0496897236400248 FAR1//AT5G59700//ATCUL4//EMB1705//AT5G08560//AT3G61340//CUM2//ATATM//AtENODL15//RPT2a//PEL1//MS5//AT4G20430//SPT16//PAPS1//ATSPO11-1//RST1//TOR//ATGSL07//ATGSL06//ABH1//ATCYCD2;1//AT1G02080//AT//AT2G17930//GRL//ATHB-14//KIS GO:0042886 amide transport BP 0.0498471912490894 AT5G19640//ATYSL3//ATOPT7//AQP1//ASG6//AT1G68570//AtPTR6 GO:0051130 positive regulation of cellular componen... BP 0.05035209851789 IFL//AT5G24350//CRN//AT5G08560//ATATM//TOR//AT1G02080//GRL//ATHB-14 GO:0051128 regulation of cellular component organiz... BP 0.0504981853264189 AT5G65590//IFL//AT5G59700//AtMAPR5//AT5G24350//CRN//AT5G08560//ATATM//RPT2a//ATSPO11-1//TOR//AT1G02080//AtPERK12//GRL//AT2G39360//ATHB-14 GO:0006863 purine nucleobase transport BP 0.0506934295431417 AT5G19500//ARR18//AtRLP55//AT3G58890//AT4G20420//AtRLP47//AT1G71910//AT2G05600 GO:0007062 sister chromatid cohesion BP 0.0506934295431417 AT5G59700//ATCUL4//AT5G08560//ATATM//ATSPO11-1//RST1//TOR//ATHB-14 GO:0015851 nucleobase transport BP 0.0506934295431417 AT5G19500//ARR18//AtRLP55//AT3G58890//AT4G20420//AtRLP47//AT1G71910//AT2G05600 GO:0048532 anatomical structure arrangement BP 0.0517466179218551 IFL//EYE//ATCUL4//CRN//BAM2//RPT2a//RST1//BUM//TOR//ABH1//AT1G10180//GRL//ATHB-14 GO:0030041 actin filament polymerization BP 0.0531229567006368 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0032271 regulation of protein polymerization BP 0.0531229567006368 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0043254 regulation of protein complex assembly BP 0.0531229567006368 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0048864 stem cell development BP 0.0534418636863664 CRN//ATHAM2//RPT2a//BUM GO:0071489 cellular response to red or far red ligh... BP 0.0534418636863664 FAR1//BBX1//HRB1//MED25 GO:0010218 response to far red light BP 0.0535645744031403 FAR1//BBX1//ATGSL1//HCF244//MED25 GO:0030029 actin filament-based process BP 0.0538371060856911 ATXID//IFL//AT5G24350//CRN//ARAC3//ARP2//GLP8//TOR//ARAC5//AT1G02080//ATXIE//GRL//ATHB-14 GO:1903409 reactive oxygen species biosynthetic pro... BP 0.0544567676301285 ATCESA7//AT5G24350//AT5G08560//CRK//AT1G43690//AT2G03200 GO:0008154 actin polymerization or depolymerization BP 0.0565306343478858 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0035266 meristem growth BP 0.056740285958902 ATTCX2//IFL//CRN//BAM2//AtENODL15//RPT2a//AT3G01810//ATHB-14 GO:0051258 protein polymerization BP 0.0568623536659441 IFL//AT5G50420//AT5G24350//CRN//AT5G12150//ATHAM2//TOR//AT1G02080//GRL//ATHB-14 GO:0007166 cell surface receptor signaling pathway BP 0.0587131814486832 AT5G63410//AT5G53320//RUL1//AT5G01950//BAM2//AT1G66830//PRO25//AT1G72460//AT1G78280 GO:0048863 stem cell differentiation BP 0.0591285597483787 CRN//ATHAM2//RPT2a//BUM GO:0009691 cytokinin biosynthetic process BP 0.0600531505166857 AT3G27150//BUM//AT2G20320 GO:0051493 regulation of cytoskeleton organization BP 0.0637445699035519 IFL//AT5G24350//CRN//TOR//AT1G02080//GRL//ATHB-14 GO:0042991 transcription factor import into nucleus BP 0.0682261560275347 AT3G28610//AT1G77550//AT2G20720 GO:0010026 trichome differentiation BP 0.0711775675699106 IFL//AT5G24350//CRN//ATATM//ARP2//TOR//AT1G02080//GRL//ATHB-14 GO:0010119 regulation of stomatal movement BP 0.071423721205733 PHS1//ATHLECRK//ATNHX2//AHG3 GO:0071478 cellular response to radiation BP 0.0732373097040063 FAR1//BBX1//HRB1//MED25//AT2G42690 GO:0071482 cellular response to light stimulus BP 0.0732373097040063 FAR1//BBX1//HRB1//MED25//AT2G42690 GO:0043412 macromolecule modification BP 0.0733474562163933 FAR1//VRN2//RHS6//ATCESA7//AT5G35370//AT5G65530//AT5G63410//AT5G63080//AT5G59700//AT5G58980//AT5G57200//AT5G55560//AT5G53320//AtEMF2//ATCUL4//AT5G41730//AT5G39430//CAT3//AT5G24350//PHS1//AT5G18610//AT5G18190//AT5G17250//AT5G13830//CRN//AT5G08560//AT5G05400//AT5G05010//RUL1//ACR2//AT5G01950//AT3G61960//AT3G60770//ATHLECRK//AT3G55050//CRK//BAM2//ATATM//AT4G34450//AT4G32250//ATCIPK6//AT4G29050//RPT2a//ACO2//CRK17//ATTRANS11//AT4G11670//AT4G10730//CNX7//UBQ14//AT1G34150//AT1G66830//AT3G19240//ATSPO11-1//AT3G17750//RST1//LSF1//AHG3//PRO25//ECT9//AT1G77550//AT1G67880//ASG6//AT1G72460//AT1G43690//PUB26//FDM5//CMT1//AT1G34320//AT1G76050//AT1G10730//AT1G64700//ABH1//AT2G40270//AtCaN2//ATCYCD2;1//AGC1.7//AT1G67470//AT1G04700//AtPERK12//AT2G36810//AT2G03200//PTI1-4//CPFTSY//AT2G45920//AT2G39360//ATGGT-IB//ATHB-14//AtTHO6//AT2G35050" GO:0051274 beta-glucan biosynthetic process BP 0.0755677717899848 ATCESA7//AtOS9//TBR//VPS26B//ATPDI12//ATGSL07//ATGSL06 GO:0006857 oligopeptide transport BP 0.0758187704667611 AT5G19640//ATYSL3//ATOPT7//ASG6//AT1G68570//AtPTR6 GO:0015833 peptide transport BP 0.0758187704667611 AT5G19640//ATYSL3//ATOPT7//ASG6//AT1G68570//AtPTR6 GO:0006874 cellular calcium ion homeostasis BP 0.0768733348513122 ATGLR2.6//ATGLR3.3//ATGLR2.7 GO:0045036 protein targeting to chloroplast BP 0.0768733348513122 cpHsc70-1//ATTOC120//CPFTSY GO:0072596 establishment of protein localization to... BP 0.0768733348513122 cpHsc70-1//ATTOC120//CPFTSY GO:0072598 protein localization to chloroplast BP 0.0768733348513122 cpHsc70-1//ATTOC120//CPFTSY GO:0007059 chromosome segregation BP 0.0779820274413701 AT5G59700//ATCUL4//AT5G08560//AT3G61340//ATATM//ATSPO11-1//RST1//TOR//ATHB-14 GO:0043648 dicarboxylic acid metabolic process BP 0.0780225567839498 ATGSL1//LOG8//AT3G53910//KAT1 GO:0001522 pseudouridine synthesis BP 0.080079007185034 AT1G34150//AT1G76050 GO:0006074 (1->3)-beta-D-glucan metabolic process BP 0.080079007185034 ATGSL07//ATGSL06 GO:0006075 (1->3)-beta-D-glucan biosynthetic proces... BP 0.080079007185034 ATGSL07//ATGSL06 GO:0051179 localization BP 0.0810257446395466 ATXID//FIP1//AAP2//AT5G19500//AT5G19640//AT5G15810//AtOS9//AT5G33280//AT5G62570//AT5G59930//AtZIP2//ARR18//AT5G57200//ATSGP1//ATYSL3//AtMAPR5//EYE//ATCUL4//AtRLP55//ATSUC6//AT5G41800//CAT3//ATGSL1//CRN//PYD2//ATGLR2.6//AtPPa6//AT5G08560//ATSYP132//AT5G05400//AT5G05010//AT3G62560//AT3G60860//ATHLECRK//AT3G58890//BAM2//AT4G39170//ATVHA-C3//AT4G35380//ARAC3//AT4G34450//AT4G32530//ATCIPK6//AT4G28570//VPS26B//ACO2//cpHsc70-1//AT4G20420//AtRLP47//AT4G11670//ATOPT7//AT4G09930//ATSYP123//ATGLR3.3//AT3G27150//AT3G18570//ATEXO70D3//ATPDI12//AT3G28610//ALIS1//AQP1//RST1//ATTOC120//ATNHX2//AT3G03610//CHMP1B//PRO25//AT1G77550//AT1G71910//AT1G67640//ASG6//AT1G78280//AT1G20110//OBP2//AT1G71680//AtMGT2//AT1G68570//ATMLO2//AT1G17080//ATGSL07//AT1G10730//ATVPS11//MSL6//ATGSL06//ABH1//ATNAT7//AT2G40270//AT2G42690//ATMC1//ATXIE//AT//AT2G17760//ATSUC4//AT1G09740//AtPTR6//AT2G20320//AT2G10940//AT2G20720//AIB//AT2G05600//AT2G03200//AT2G03240//ATGLR2.7//CPFTSY//AT2G39360//ATHB-14//BP80-3;2 GO:0006457 protein folding BP 0.0832210799736741 ATCYP20-2//AtOS9//CLPX//MAKR5//AT5G49580//cpHsc70-1//AT1G72660//ASG6//AT2G43630//AT1G18700//AT2G17880//AT2G25560 GO:0033036 macromolecule localization BP 0.0841087429968066 FIP1//AAP2//AT5G15810//AT5G62570//EYE//ATCUL4//CRN//PYD2//AtPPa6//ATSYP132//AT5G05010//AT3G62560//ARAC3//AT4G34450//VPS26B//cpHsc70-1//ATSYP123//AT3G18570//AT3G28610//ALIS1//RST1//ATTOC120//CHMP1B//PRO25//AT1G77550//AT1G78280//AT1G20110//OBP2//ATMLO2//AT1G17080//ATGSL07//AT1G10730//ATVPS11//ATGSL06//ABH1//AT2G40270//ATMC1//AT//AT2G10940//AT2G20720//AIB//CPFTSY//ATHB-14//BP80-3;2 GO:0006664 glycolipid metabolic process BP 0.0841183914421616 AT5G49900//AT5G17250//AT3G62590//AT3G03610//AT1G73170//AT1G33700//AT2G42690 GO:0009968 negative regulation of signal transducti... BP 0.0843648460659267 PHS1//AHG3//AIP1//ATGGT-IB//AtTHO6 GO:0010648 negative regulation of cell communicatio... BP 0.0843648460659267 PHS1//AHG3//AIP1//ATGGT-IB//AtTHO6 GO:0023057 negative regulation of signaling BP 0.0843648460659267 PHS1//AHG3//AIP1//ATGGT-IB//AtTHO6 GO:0072503 cellular divalent inorganic cation homeo... BP 0.0849143704380441 ATGLR2.6//ATGLR3.3//AtTMN7//ATGLR2.7 GO:0070646 protein modification by small protein re... BP 0.0853592854873006 FAR1//ATCESA7//AT5G58980//AT5G24350//AT5G08560//CRK//AT1G43690//AT2G03200