GOID	TERM	ONTOLOGY	pValue	Genes
GO:0009658	chloroplast organization	BP	4.24170587982943e-07	ATG4//ARRPS1//AT5G55220//CLPP4//ATSIG5//HCF136//ATTERC//AT5G11480//ATMTRNASEII//AtcpRRF//EDD//GDC1//AT3G13180//ABCI6//LSMT-L//RNE//CH-CPN60A//ALB4//AT2G30695
GO:0009902	chloroplast relocation	BP	1.2559181253038e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//ABCI6//LSMT-L//RNE//ALB4
GO:0051667	establishment of plastid localization	BP	1.2559181253038e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//ABCI6//LSMT-L//RNE//ALB4
GO:0019750	chloroplast localization	BP	1.3977882615159e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//ABCI6//LSMT-L//RNE//ALB4
GO:0051644	plastid localization	BP	1.3977882615159e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//ABCI6//LSMT-L//RNE//ALB4
GO:0051656	establishment of organelle localization	BP	1.55336666608194e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//ABCI6//LSMT-L//RNE//ALB4
GO:0019288	isopentenyl diphosphate biosynthetic pro...	BP	1.76096051189437e-05	ATG4//AT5G14910//ARRPS1//AT5G55220//CLPP4//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0009240	isopentenyl diphosphate biosynthetic pro...	BP	2.14270868570161e-05	ATG4//AT5G14910//ARRPS1//AT5G55220//CLPP4//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0046490	isopentenyl diphosphate metabolic proces...	BP	2.14270868570161e-05	ATG4//AT5G14910//ARRPS1//AT5G55220//CLPP4//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0009657	plastid organization	BP	2.47648024539165e-05	ATG4//ARRPS1//AT5G55220//CLPP4//ATSIG5//HCF136//ATTERC//AT5G11480//ATMTRNASEII//AtcpRRF//EDD//GDC1//AT3G13180//ABCI6//ISPF//PRPL11//PSRP3/1//LSMT-L//RNE//CH-CPN60A//ALB4//AT2G30695
GO:0034660	ncRNA metabolic process	BP	4.58794709422759e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//AT5G11480//ATMTRNASEII//EDD//LHCB5//AT1G17960//ATIPT8//AT3G13180//ABCI6//ISPF//PRPL11//LSMT-L//RNE//ALB4//AT2G37660//AT2G30695
GO:0008299	isoprenoid biosynthetic process	BP	8.13030770949615e-05	ATG4//AT5G14910//ARRPS1//AT5G55220//AACT1//CLPP4//HCF136//ATCCD1//AtcpRRF//AT3G54510//AT2S2//PRPL28//GDC1//ATBPC7//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0009668	plastid membrane organization	BP	9.65696036505662e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//AtcpRRF//ABCI6//ISPF//PRPL11//LSMT-L//RNE//ALB4
GO:0010027	thylakoid membrane organization	BP	9.65696036505662e-05	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//AtcpRRF//ABCI6//ISPF//PRPL11//LSMT-L//RNE//ALB4
GO:0006720	isoprenoid metabolic process	BP	0.000123363807788953	ATG4//AT5G14910//ARRPS1//AT5G55220//AACT1//CLPP4//HCF136//ATCCD1//AtcpRRF//AT3G54510//AT2S2//PRPL28//GDC1//ATBPC7//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0051640	organelle localization	BP	0.00014549422407022	ATG4//ARRPS1//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//ABCI6//LSMT-L//RNE//ALB4
GO:0006090	pyruvate metabolic process	BP	0.000155216388437353	ATG4//AT5G14910//ARRPS1//AT5G55220//GLT1//CLPP4//ATCCD1//AtcpRRF//PRPL28//GDC1//PFD6//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//RGA//AT2G37660//AT2G30695
GO:0044262	cellular carbohydrate metabolic process	BP	0.000309242483953821	XTH15//AT5G28500//ATCESA7//COBL4//AT5G65950//AT5G55220//RGP4//AtGDPD2//F8H//AT5G01590//AT3G59480//AT3G43220//AT4G27435//AT4G08160//AT1G66180//AT3G26380//AT1G66430//CLPP5//AT1G17340//AT1G18460//LSMT-L//ABCD2//AT1G30690//AT2G37660
GO:0019682	glyceraldehyde-3-phosphate metabolic pro...	BP	0.000383060970974918	ATG4//AT5G14910//ARRPS1//AT5G55220//CLPP4//HCF136//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0006364	rRNA processing	BP	0.000782393050314249	ATG4//ARRPS1//CLPP4//HCF136//AT5G11480//ATMTRNASEII//LHCB5//AT3G13180//ABCI6//ISPF//PRPL11//RNE//AT2G37660//AT2G30695
GO:0016072	rRNA metabolic process	BP	0.000782393050314249	ATG4//ARRPS1//CLPP4//HCF136//AT5G11480//ATMTRNASEII//LHCB5//AT3G13180//ABCI6//ISPF//PRPL11//RNE//AT2G37660//AT2G30695
GO:0009073	aromatic amino acid family biosynthetic ...	BP	0.00106229057455323	ATG4//AtcpRRF//ABCI6//AT1G36320//ISPF//LSMT-L//AT2G30695
GO:0034470	ncRNA processing	BP	0.00125922464599189	ATG4//ARRPS1//CLPP4//HCF136//AT5G11480//ATMTRNASEII//LHCB5//ATIPT8//AT3G13180//ABCI6//ISPF//PRPL11//RNE//AT2G37660//AT2G30695
GO:0008654	phospholipid biosynthetic process	BP	0.00131490588336169	ATG4//AT5G14910//ARRPS1//AT5G55220//CLPP4//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0006081	cellular aldehyde metabolic process	BP	0.00144165771594166	ATG4//AT5G14910//ARRPS1//AT5G55220//CLPP4//HCF136//AT5G06580//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0015994	chlorophyll metabolic process	BP	0.00208764063549182	ATG4//ARRPS1//HCF136//ATCCD1//NYC1//STN7//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0006644	phospholipid metabolic process	BP	0.00210468400711011	ATG4//AT5G14910//ARRPS1//PLDALPHA3//AT5G55220//CLPP4//ATCCD1//AtcpRRF//PRPL28//GDC1//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT2G37660//AT2G30695
GO:0015995	chlorophyll biosynthetic process	BP	0.00347647661196485	ATG4//ARRPS1//HCF136//ATCCD1//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0044264	cellular polysaccharide metabolic proces...	BP	0.0039114441165858	XTH15//AT5G28500//ATCESA7//COBL4//AT5G65950//AT5G55220//RGP4//F8H//AT5G01590//AT3G43220//AT4G27435//AT4G08160//AT1G66180//CLPP5//LSMT-L//ABCD2//AT1G30690//AT2G37660
GO:0042440	pigment metabolic process	BP	0.00402691102322284	ATG4//ARRPS1//AT5G55220//HCF136//ATCCD1//BGLU10//NYC1//ATMYBL2//STN7//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0032787	monocarboxylic acid metabolic process	BP	0.00491970979076699	ATG4//AT5G14910//ARRPS1//ACP5//ATSNAP33//AT5G55220//GLT1//CLPP4//ATCCD1//AtcpRRF//AT3G59480//AT3G43250//AT4G28410//PRPL28//CIPK11//GDC1//ATBPC7//ABCI6//PGDH//AT1G29670//PFD6//AT1G66430//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//ATMYB3//RGA//AT2G37660//AT2G30695
GO:0042793	transcription from plastid promoter	BP	0.00564628839104928	ATG4//CLPP4//HCF136//ATTERC//ABCI6//RNE
GO:0006073	cellular glucan metabolic process	BP	0.00619095065449415	XTH15//AT5G28500//ATCESA7//AT5G65950//AT5G55220//RGP4//AT5G01590//AT1G66180//CLPP5//LSMT-L//ABCD2//AT1G30690//AT2G37660
GO:0044042	glucan metabolic process	BP	0.00619095065449415	XTH15//AT5G28500//ATCESA7//AT5G65950//AT5G55220//RGP4//AT5G01590//AT1G66180//CLPP5//LSMT-L//ABCD2//AT1G30690//AT2G37660
GO:0006778	porphyrin-containing compound metabolic ...	BP	0.00718586912374636	ATG4//ARRPS1//HCF136//ATCCD1//NYC1//STN7//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0033013	tetrapyrrole metabolic process	BP	0.00718586912374636	ATG4//ARRPS1//HCF136//ATCCD1//NYC1//STN7//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0034637	cellular carbohydrate biosynthetic proce...	BP	0.0078450023131386	AT5G28500//ATCESA7//COBL4//AT5G65950//AT5G55220//RGP4//F8H//AT3G59480//AT3G43220//AT4G27435//AT4G08160//AT1G66430//CLPP5//AT1G18460//LSMT-L//ABCD2
GO:0044802	single-organism membrane organization	BP	0.00801575965357543	ATG4//ARRPS1//ATSNAP33//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//AtcpRRF//ABCI6//PGDH//ISPF//PRPL11//LSMT-L//RNE//IMPA-4//ALB4
GO:0006498	N-terminal protein lipidation	BP	0.0080889019655157	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0006499	N-terminal protein myristoylation	BP	0.0080889019655157	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0018377	protein myristoylation	BP	0.0080889019655157	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0009311	oligosaccharide metabolic process	BP	0.00822820564811909	AT5G28500//AT5G55220//AT3G59480//AT3G26380//AT1G66430//CLPP5//LSMT-L//ABCD2//RGA
GO:0031365	N-terminal protein amino acid modificati...	BP	0.00890884925724175	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0010218	response to far red light	BP	0.009173575523411	ATSIG5//HCF136//LHCB5//ATFD2//ISPF//RGA
GO:0006066	alcohol metabolic process	BP	0.00949082654014411	PLDALPHA3//AGP7//AACT1//AtGDPD2//ATSIG5//AtcpRRF//AT3G43220//AT1G66180//ATBPC7//SGT//AT1G17340//AT1G18460//AT1G30690
GO:0006497	protein lipidation	BP	0.00949082654014411	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0042158	lipoprotein biosynthetic process	BP	0.00949082654014411	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0006091	generation of precursor metabolites and ...	BP	0.00957768141949305	ARRPS1//AT5G59250//GLT1//CLPP4//ATSIG5//HCF136//AT3G59480//LHCB5//ABCI6//AT3G10020//ATFD2//PFD6//STN7//AT1G66430//AT1G63610//PSAE-2//RGA//AT2G37660//AT2G30695
GO:0042254	ribosome biogenesis	BP	0.00971799254735542	ATG4//ARRPS1//CLPP4//HCF136//AT5G11480//ATMTRNASEII//LHCB5//AT3G13180//ABCI6//ISPF//PRPL11//RNE//AT2G37660//AT2G30695
GO:0042157	lipoprotein metabolic process	BP	0.00979277873813133	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0015698	inorganic anion transport	BP	0.00979738405433118	ATSNAP33//AtGDPD2//PHT4;3//ATCLC-E//ATCLC-B//AtRAV2//NRT1.9//AT2G04800//IMPA-4
GO:0061024	membrane organization	BP	0.00985682558315625	ATG4//ARRPS1//ATSNAP33//AT5G55220//CLPP4//HCF136//ATTERC//ATMTRNASEII//AtcpRRF//ABCI6//PGDH//ISPF//PRPL11//LSMT-L//RNE//IMPA-4//ALB4
GO:0022613	ribonucleoprotein complex biogenesis	BP	0.0106076085561864	ATG4//ARRPS1//CLPP4//HCF136//AT5G11480//ATMTRNASEII//LHCB5//AT3G13180//ABCI6//ISPF//PRPL11//RNE//AT2G37660//AT2G30695
GO:0006779	porphyrin-containing compound biosynthet...	BP	0.0111673510289128	ATG4//ARRPS1//HCF136//ATCCD1//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0019684	photosynthesis, light reaction	BP	0.0121224356992646	ARRPS1//AT5G59250//CLPP4//ATSIG5//HCF136//LHCB5//ABCI6//ATFD2//STN7//AT1G63610//PSAE-2//AT2G37660//AT2G30695
GO:0033014	tetrapyrrole biosynthetic process	BP	0.0122318822529868	ATG4//ARRPS1//HCF136//ATCCD1//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0019538	protein metabolic process	BP	0.0136240776343339	XTH15//AT4G14350//AT1G27880//ATCESA7//AT5G25530//AT5G65950//ATSNAP33//AT5G60170//AT5G55220//AGD5//CIPK20//CLPP4//ATXR7//RPL27//AT5G37540//HCF136//ATCCD1//AtcpRRF//ARFA1E//AtPP2-A13//AT3G55350//AT3G52960//CEP3//EDD//J11//AT4G30690//UKL4//ATCHX17//ABCE2//NYC1//AT4G03230//APP//AT2G40580//PRPL28//CIPK11//AT1G17960//AT1G51805//AT1G66180//AT3G13670//AT3G26380//AT3G20230//ATBPC7//AT3G27110//AtPERK3//emb2458//ATSIK//ABCI6//AT1G77500//PFD6//STN7//AT1G72460//AT2G41820//CLPP5//PRPL11//AT1G53050//AT1G01670//AT1G08210//AT1G52560//PSRP3/1//ATPEPR1//LSMT-L//ASK1//AT2G04800//ATCUL3//AT2G21390//CH-CPN60A//IMPA-4//AT1G09750//AT2G18330//OTLD1//ATEPR1//RGA//ATMPK17//AT2G44260//AT2G32730//AT2G30695
GO:0008610	lipid biosynthetic process	BP	0.0138388966989377	ATG4//AT5G14910//ARRPS1//ACP5//AGP7//AT5G55220//AACT1//CLPP4//HCF136//ATCCD1//AtcpRRF//AT3G54510//AT2S2//PRPL28//GDC1//AT1G66180//ATBPC7//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//AT1G30690//AT2G37660//AT2G30695
GO:0005984	disaccharide metabolic process	BP	0.0139660851089056	AT5G28500//AT5G55220//AT3G59480//AT3G26380//AT1G66430//CLPP5//LSMT-L//ABCD2
GO:0005976	polysaccharide metabolic process	BP	0.0143414878613955	XTH15//AT5G28500//ATCESA7//COBL4//AT5G65950//AT5G55220//RGP4//F8H//AT5G01590//AT3G43220//AT4G27435//AT4G08160//AT1G66180//CLPP5//LSMT-L//ABCD2//AT1G30690//AT2G37660
GO:0044260	cellular macromolecule metabolic process	BP	0.0144335311890014	XTH15//AT4G14350//AT1G27880//AT5G28500//ATG4//ATCESA7//COBL4//ARRPS1//RECQSIM//AT5G25530//AT5G65950//ATSNAP33//AT5G60470//AT5G60170//AT5G55220//AGD5//RGP4//AT5G50940//CIPK20//CLPP4//ATXR7//RPL27//ATSIG5//HCF136//F8H//ATTERC//AT5G11480//AT5G07810//ATMTRNASEII//AT5G01590//ATCCD1//AtcpRRF//ARFA1E//AtPP2-A13//AT3G58210//AT3G55350//AT3G52960//ATBT2//EDD//AT3G43220//AT4G38780//AT4G38020//J11//AT4G30690//AT4G27435//ATRBP45C//UKL4//ATCHX17//NYC1//LHCB5//AT4G08160//AT4G03230//APP//AT2G40580//PRPL28//CIPK11//AT1G17960//AT1G19210//AT1G51805//AT1G66180//AT3G13670//AT3G26380//ATIPT8//AT3G20230//AT3G13180//ATBPC7//AT3G13340//AT3G26730//ATSNM1//ABF4//AT3G21300//AtPERK3//ATSIK//ABCI6//AT1G77500//ATMYBL2//PFD6//STN7//AtRAV2//ISPF//AtMYB103//AT1G72460//AT2G41820//CLPP5//PRPL11//ATERF-8//AT1G53050//AT1G01670//SCL5//AT1G52560//PSRP3/1//ATPEPR1//LSMT-L//AT1G76050//ASK1//ABCD2//AT1G30690//RNE//AT2G04800//ATCUL3//AT2G21390//CH-CPN60A//ATMYB3//IMPA-4//ALB4//AT2G18330//ATMYB7//OTLD1//ATEPR1//RGA//ATMPK17//AT2G22750//AT2G37660//AT2G44260//AT2G32730//AT2G30695
GO:0043543	protein acylation	BP	0.0144424955271254	XTH15//ATSNAP33//AGD5//ARFA1E//AtPP2-A13//AT3G55350//ATCHX17//AT3G26380//AT1G77500//AT1G53050//AT2G04800//IMPA-4//AT2G44260
GO:0046148	pigment biosynthetic process	BP	0.0148829903336934	ATG4//ARRPS1//AT5G55220//HCF136//ATCCD1//ATMYBL2//ISPF//PRPL11//ALB-1V//AT2G37660
GO:0016226	iron-sulfur cluster assembly	BP	0.0157225884214487	AtcpRRF//ABCI6//AT1G36320//LSMT-L//CH-CPN60A//AT2G30695
GO:0031163	metallo-sulfur cluster assembly	BP	0.0157225884214487	AtcpRRF//ABCI6//AT1G36320//LSMT-L//CH-CPN60A//AT2G30695
GO:0043170	macromolecule metabolic process	BP	0.0160445329530308	XTH15//AT4G14350//AT1G27880//AT5G28500//ATG4//ATCESA7//COBL4//ARRPS1//RECQSIM//AT5G25530//AT5G65950//ATSNAP33//AT5G60470//AT5G60170//AT5G55220//AGD5//RGP4//AT5G50940//CIPK20//CLPP4//ATXR7//RPL27//AT5G37540//ATSIG5//HCF136//F8H//ATTERC//AT5G11480//AT5G07810//ATMTRNASEII//AT5G01590//ATCCD1//AtcpRRF//ARFA1E//AtPP2-A13//AT3G58210//AT3G55350//AT3G52960//CEP3//ATBT2//EDD//AT3G43220//AT4G38780//AT4G38020//J11//AT4G30690//AT4G27435//ATRBP45C//UKL4//ATCHX17//ABCE2//NYC1//LHCB5//AT4G08160//AT4G03230//APP//AT2G40580//PRPL28//CIPK11//AT1G17960//AT1G19210//AT1G51805//AT1G66180//AT3G13670//AT3G26380//ATIPT8//AT3G20230//AT3G13180//ATBPC7//AT3G13340//AT3G27110//AT3G26730//ATSNM1//ABF4//AT3G21300//AtPERK3//emb2458//ATSIK//ABCI6//AT1G77500//ATMYBL2//PFD6//STN7//AtRAV2//ISPF//AtMYB103//AT1G72460//AT2G41820//CLPP5//PRPL11//ATERF-8//AT1G53050//AT1G01670//AT1G08210//SCL5//AT1G52560//PSRP3/1//ATPEPR1//LSMT-L//AT1G76050//ASK1//ABCD2//AT1G30690//RNE//AT2G04800//ATCUL3//AT2G21390//CH-CPN60A//ATMYB3//IMPA-4//AT1G09750//ALB4//AT2G18330//ATMYB7//OTLD1//ATEPR1//RGA//ATMPK17//AT2G22750//AT2G37660//AT2G44260//AT2G32730//AT2G30695
GO:0045036	protein targeting to chloroplast	BP	0.0171073965524673	AT5G14910//AT5G01590//AT3G13180//AtTic55//AT2G30695
GO:0072596	establishment of protein localization to...	BP	0.0171073965524673	AT5G14910//AT5G01590//AT3G13180//AtTic55//AT2G30695
GO:0072598	protein localization to chloroplast	BP	0.0171073965524673	AT5G14910//AT5G01590//AT3G13180//AtTic55//AT2G30695
GO:0044237	cellular metabolic process	BP	0.0174166386322922	XTH15//AT4G14350//AT1G27880//AT5G28500//ATG4//ATCESA7//COBL4//AT5G14910//ARRPS1//RECQSIM//ACP5//AT5G25530//PLDALPHA3//AT5G65950//ATSNAP33//AT5G60470//AT5G60170//AT5G59250//AT5G55220//AGD5//GLT1//RGP4//AT5G50940//MMT//AACT1//CIPK20//CLPP4//SUPER1//ATXR7//RPL27//AtGDPD2//ATSIG5//HCF136//F8H//BUD2//GDH1//ATTERC//AT5G11480//AT5G07810//AT5G06580//SIS//ATMTRNASEII//AT5G01590//ATCCD1//AtcpRRF//ATCKX6//ARFA1E//AtPP2-A13//AT3G59480//AT3G58210//AT3G55350//AT3G54510//AT3G52960//ATBT2//EDD//AT3G43220//AT3G43250//AT4G38780//AT4G38020//J11//CBSX2//PDE327//AT4G30690//AT4G28410//AT4G27435//AT2S2//ATRBP45C//UKL4//ATCHX17//NYC1//LHCB5//AT4G08160//AT4G03230//APP//AT2G40580//PRPL28//CIPK11//AT1G17960//AT1G19210//AT1G51805//GDC1//AT1G66180//AT3G13670//AT3G26380//ATIPT8//AT3G20230//AT3G13180//ATBPC7//AT3G13340//AT3G26730//ATSNM1//ABF4//AT3G21300//AtPERK3//SGT//ATSIK//ABCI6//AT3G10020//PGDH//ATFD2//AT1G77500//ATMYBL2//AT1G29670//PFD6//STN7//AtRAV2//AT1G66430//AT1G36320//ISPF//AtMYB103//AT1G72460//AT2G41820//CLPP5//AT1G17340//PRPL11//ATERF-8//AT1G53050//AT1G63610//AT1G01670//AT1G18460//ALB-1V//SCL5//AT1G52560//PSRP3/1//ATPEPR1//LSMT-L//AT1G76050//ASK1//ABCD2//AT1G30690//RNE//ESB1//AT2G04800//ATCUL3//AT2G21390//NSH1//CH-CPN60A//ATMYB3//IMPA-4//ALB4//PSAE-2//AT2G18330//ATMYB7//OTLD1//ATEPR1//RGA//ATMPK17//AT2G22750//AT2G37660//AT2G44260//SHT//AT2G32730//AT2G30695
GO:0006399	tRNA metabolic process	BP	0.0174422283454614	AT5G11480//ATMTRNASEII//EDD//AT1G17960//ATIPT8//AT3G13180//AT2G30695
GO:0015979	photosynthesis	BP	0.0178542924533325	ARRPS1//AT5G59250//CLPP4//ATSIG5//HCF136//PDE327//LHCB5//ABCI6//ATFD2//STN7//AT1G63610//ALB-1V//PSAE-2//AT2G37660//AT2G30695
GO:0052546	cell wall pectin metabolic process	BP	0.0183122112187156	ATCESA7//AT1G66180//AT1G30690
GO:0005975	carbohydrate metabolic process	BP	0.0191672521318873	XTH15//AT5G28500//ATCESA7//COBL4//AT5G65950//EMB2728//AT5G55220//GLT1//RGP4//AtGDPD2//F8H//AT5G01590//AT3G59480//AT3G49880//AT3G43220//AT4G27435//UKL4//AT4G08160//APP//AT1G66180//AT3G13670//AT3G26380//SGT//PFD6//AT1G66430//CLPP5//ATBXL2//AT1G17340//AT1G18460//LSMT-L//ABCD2//AT1G30690//IMPA-4//RGA//AT2G37660//AT2G32730
GO:0044711	single-organism biosynthetic process	BP	0.0204352181171221	AT5G28500//ATG4//ATCESA7//COBL4//AT5G14910//ARRPS1//ACP5//AT5G65950//AGP7//ATSNAP33//AT5G55220//GLT1//RGP4//AACT1//CLPP4//ATSIG5//HCF136//F8H//ATTERC//ATCCD1//AtcpRRF//AT3G59480//AT3G54510//AT3G43220//AT3G43250//AT4G28410//AT4G27435//AT2S2//UKL4//LHCB5//AT4G08160//PRPL28//CIPK11//GDC1//AT1G66180//ATBPC7//ABCI6//PGDH//ATMYBL2//PFD6//AT1G66430//AT1G36320//ISPF//AtMYB103//CLPP5//PRPL11//AT1G18460//ALB-1V//PSRP3/1//LSMT-L//ASK1//ABCD2//AT1G30690//RNE//ESB1//ATMYB3//AT2G18330//RGA//AT2G37660//AT2G32730//AT2G30695
GO:0016051	carbohydrate biosynthetic process	BP	0.0204927666986514	AT5G28500//ATCESA7//COBL4//AT5G65950//AT5G55220//GLT1//RGP4//F8H//AT3G59480//AT3G43220//AT4G27435//UKL4//AT4G08160//PFD6//AT1G66430//CLPP5//AT1G18460//LSMT-L//ABCD2//RGA//AT2G32730
GO:0010304	PSII associated light-harvesting complex...	BP	0.0205541890427286	HCF136//ATCCD1//NYC1
GO:0009744	response to sucrose	BP	0.022757129270475	AtPP2-A13//AT4G23870//LHCB5//AT3G15450//BCE2//ATFD2//ISPF
GO:0034285	response to disaccharide	BP	0.023740664300326	AtPP2-A13//AT4G23870//LHCB5//AT3G15450//BCE2//ATFD2//ISPF
GO:0009608	response to symbiont	BP	0.0239961841151726	BGLU10//IMPA-4
GO:0042176	regulation of protein catabolic process	BP	0.0239961841151726	RGA//AT2G32730
GO:0006098	pentose-phosphate shunt	BP	0.0244868044418598	ATG4//AT5G14910//ARRPS1//HCF136//ATCCD1//AtcpRRF//GDC1//ISPF
GO:0051156	glucose 6-phosphate metabolic process	BP	0.0244868044418598	ATG4//AT5G14910//ARRPS1//HCF136//ATCCD1//AtcpRRF//GDC1//ISPF
GO:0009646	response to absence of light	BP	0.0254700394170602	GDH1//BCE2//ATHSPRO2
GO:1901615	organic hydroxy compound metabolic proce...	BP	0.0256905746216035	PLDALPHA3//AGP7//ATSNAP33//AACT1//AtGDPD2//ATSIG5//AtcpRRF//AT3G43220//PRPL28//AT1G66180//ATBPC7//SGT//ATMYBL2//AT1G17340//AT1G18460//AT1G30690//AT2G37660
GO:0044281	small molecule metabolic process	BP	0.027116725139225	ATG4//AT5G14910//ARRPS1//ACP5//PLDALPHA3//AGP7//ATSNAP33//AT5G55220//GLT1//MMT//AACT1//CLPP4//AtGDPD2//ATSIG5//HCF136//GDH1//AT5G06580//ATCCD1//AtcpRRF//AT3G59480//AT3G54510//EDD//AT3G43220//AT3G43250//AT4G28410//AT2S2//LHCB5//PRPL28//CIPK11//AT1G17960//GDC1//AT1G66180//ATBPC7//SGT//ABCI6//PGDH//AT1G29670//PFD6//AT1G66430//AT1G36320//ISPF//AT1G17340//PRPL11//AT1G18460//ALB-1V//PSRP3/1//LSMT-L//ABCD2//AT1G30690//NSH1//ATMYB3//AT2G18330//RGA//AT2G37660//AT2G30695
GO:0006739	NADP metabolic process	BP	0.0273141027158625	ATG4//AT5G14910//ARRPS1//HCF136//ATCCD1//AtcpRRF//GDC1//ISPF
GO:0009072	aromatic amino acid family metabolic pro...	BP	0.0273141027158625	ATG4//AtcpRRF//ABCI6//PGDH//AT1G36320//ISPF//LSMT-L//AT2G30695
GO:0009312	oligosaccharide biosynthetic process	BP	0.0281436907177862	AT3G59480//AT1G66430//RGA
GO:0017014	protein nitrosylation	BP	0.0288570668311125	AT3G52960//CLPP5
GO:0018119	peptidyl-cysteine S-nitrosylation	BP	0.0288570668311125	AT3G52960//CLPP5
GO:0032544	plastid translation	BP	0.0288570668311125	AtcpRRF//PSRP3/1
GO:0006629	lipid metabolic process	BP	0.0296112287448561	ATG4//AT5G14910//ARRPS1//ACP5//PLDALPHA3//AGP7//AT5G55220//AACT1//CLPP4//AtGDPD2//HCF136//ATCCD1//AtcpRRF//AT3G54510//AT2S2//PRPL28//GDC1//AT1G66180//AT3G26380//ATBPC7//SGT//AT1G29670//ISPF//AT1G02660//PRPL11//AT1G18460//ALB-1V//PSRP3/1//LSMT-L//AT1G30690//AT2G37660//AT2G30695
GO:0046496	nicotinamide nucleotide metabolic proces...	BP	0.0303606220724784	ATG4//AT5G14910//ARRPS1//HCF136//ATCCD1//AtcpRRF//GDC1//ISPF
GO:0044267	cellular protein metabolic process	BP	0.0304029585546051	XTH15//AT4G14350//AT1G27880//ATCESA7//AT5G25530//AT5G65950//ATSNAP33//AT5G60170//AT5G55220//AGD5//CIPK20//CLPP4//ATXR7//RPL27//HCF136//ATCCD1//AtcpRRF//ARFA1E//AtPP2-A13//AT3G55350//AT3G52960//EDD//J11//AT4G30690//UKL4//ATCHX17//NYC1//AT4G03230//APP//AT2G40580//PRPL28//CIPK11//AT1G17960//AT1G51805//AT3G13670//AT3G26380//AT3G20230//ATBPC7//AtPERK3//ATSIK//ABCI6//AT1G77500//PFD6//STN7//AT1G72460//AT2G41820//CLPP5//PRPL11//AT1G53050//AT1G01670//AT1G52560//PSRP3/1//ATPEPR1//LSMT-L//ASK1//AT2G04800//ATCUL3//AT2G21390//CH-CPN60A//IMPA-4//AT2G18330//OTLD1//ATEPR1//ATMPK17//AT2G44260//AT2G32730//AT2G30695
GO:0016114	terpenoid biosynthetic process	BP	0.0305529472489371	ATG4//AT5G55220//AACT1//HCF136//ATCCD1//AT3G54510//AT2S2//ATBPC7//ISPF
GO:0010114	response to red light	BP	0.0324081127972497	ATSIG5//HCF136//LHCB5//ATFD2//ISPF
GO:0019362	pyridine nucleotide metabolic process	BP	0.0325168160629098	ATG4//AT5G14910//ARRPS1//HCF136//ATCCD1//AtcpRRF//GDC1//ISPF
GO:0019752	carboxylic acid metabolic process	BP	0.0340148344021027	ATG4//AT5G14910//ARRPS1//ACP5//ATSNAP33//AT5G55220//GLT1//CLPP4//GDH1//ATCCD1//AtcpRRF//AT3G59480//AT3G54510//EDD//AT3G43250//AT4G28410//AT2S2//LHCB5//PRPL28//CIPK11//AT1G17960//GDC1//ATBPC7//ABCI6//PGDH//AT1G29670//PFD6//AT1G66430//AT1G36320//ISPF//PRPL11//ALB-1V//PSRP3/1//LSMT-L//ATMYB3//RGA//AT2G37660//AT2G30695
GO:0018198	peptidyl-cysteine modification	BP	0.034072826844325	AT3G52960//CLPP5