GOID TERM ONTOLOGY pValue Genes GO:0010089 xylem development BP 0.000175808910205631 AT5G39890//AT5G38020//AT5G15120//AT4G39720//AT1G33440//IXR11 GO:0010087 phloem or xylem histogenesis BP 0.000507404685410664 AT5G39890//AT5G38020//AT5G15120//AT4G39720//AT1G33440//IXR11 GO:0098771 inorganic ion homeostasis BP 0.00100281233473906 ATPGMP//ATSOS3//AtGDPD1//ATMT-1//AtG3Pp3//ATGLR3.5 GO:0010073 meristem maintenance BP 0.00117793793197209 MSI3//AT4G33560//AGL24//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0051704 multi-organism process BP 0.00146813271619209 AT5G04390//ATWRKY27//ATPGMP//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//MSI3//AT4G33560//AT4G11900//AT4G00700//AT1G33440//AtNiaP//ALDH1A//LBD41//ATCDC48//AT3G10040//EDA30//AtPEPR2//ATMPK11//AT1G02360//CML38//AT1G01920//AT1G22410//AT1G17230//AT1G75890//ATWRKY17//ATNFXL1//MGP2//ATMTPB1//PY GO:0048509 regulation of meristem development BP 0.0015602156639685 AT4G33560//AGL24//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0010075 regulation of meristem growth BP 0.00195218709525732 AT4G33560//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0009798 axis specification BP 0.00197373204244088 AT4G33560//AT3G27220//LBD4//AT3G10040//CHMP1B GO:0072593 reactive oxygen species metabolic proces... BP 0.00204148877380254 SRO5//AT5G49555//AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040//ATMPK11//ALDH5F1//ATNFXL1 GO:0035266 meristem growth BP 0.00227069812323801 AT4G33560//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0006875 cellular metal ion homeostasis BP 0.00377525926226813 ATPGMP//ATSOS3//ATMT-1//ATGLR3.5 GO:0098542 defense response to other organism BP 0.00416007124942193 ATWRKY27//ATPGMP//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//AT4G33560//AT4G00700//ALDH1A//LBD41//ATCDC48//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//AT1G22410//ATWRKY17//ATNFXL1 GO:0010310 regulation of hydrogen peroxide metaboli... BP 0.00429719835879417 AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040//ATMPK11//ATNFXL1 GO:0001666 response to hypoxia BP 0.00469941923354874 AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040 GO:0071229 cellular response to acid chemical BP 0.00499907208765754 AT5G39890//AT5G15120//AT3G60690//AT3G48760//AT4G33560//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//ANAC013//RHA2A GO:0036293 response to decreased oxygen levels BP 0.00546311377378721 AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040 GO:0070482 response to oxygen levels BP 0.00546311377378721 AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040 GO:0044036 cell wall macromolecule metabolic proces... BP 0.00574790225639798 AT5G39890//AT5G38020//AT5G15120//AT4G39720//AT1G33440//AT1G02360//AT2G43580//IXR11 GO:2000377 regulation of reactive oxygen species me... BP 0.00583804217226 AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040//ATMPK11//ATNFXL1 GO:0050801 ion homeostasis BP 0.00605143997334747 ATPGMP//ATSOS3//AtGDPD1//ATMT-1//AtG3Pp3//ATGLR3.5 GO:0005984 disaccharide metabolic process BP 0.00677881249530108 ATPGMP//OEP6//AT4G10260//AT1G07440//AT2G35840//PY GO:0006873 cellular ion homeostasis BP 0.00724651549436746 ATPGMP//ATSOS3//AtGDPD1//ATMT-1//ATGLR3.5 GO:0006952 defense response BP 0.00741345829555982 ATMLO11//ATWRKY27//ATPGMP//AT5G45210//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//AT3G48760//AT4G33560//AT4G00700//AtNiaP//ALDH1A//JAI3//LBD41//ATCDC48//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//AT1G22410//AT1G23910//ATWRKY17//ATNFXL1 GO:0009888 tissue development BP 0.00771241726409408 CYCP4//AT5G39890//AT5G38020//AT5G15120//AT4G39720//MSI3//AT4G33560//AGL24//AT1G33440//AT3G27220//LBD4//ICK3//AT3G06035//AT3G10040//AtPEPR2//IXR11//AT1G17230//AT2G23950 GO:0009944 polarity specification of adaxial/abaxia... BP 0.00827504775106091 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0007154 cell communication BP 0.00869243349187306 AT4G14980//ATMGD2//AT3G44830//ARFB1B//AtCDC20.4//UGT72E3//ATWRKY27//AT5G45210//AT5G39890//ATSOS3//AT5G15120//AT3G60690//AT3G48760//MSI3//AT4G33560//AT4G11900//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//AtbZIP//ACAM-4//AT2G43580//ANAC013//AT1G17230//RHA2A//AT2G15900//AtRLP20//ATGLR3.5 GO:0065001 specification of axis polarity BP 0.00900877013324365 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0009607 response to biotic stimulus BP 0.0090847112153044 ATWRKY27//ATPGMP//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//AT4G33560//AT4G00700//AT1G33440//ALDH1A//LBD41//ATCDC48//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//CML38//AT1G22410//AT1G17230//ATWRKY17//ATNFXL1//PY GO:0043207 response to external biotic stimulus BP 0.0090847112153044 ATWRKY27//ATPGMP//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//AT4G33560//AT4G00700//AT1G33440//ALDH1A//LBD41//ATCDC48//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//CML38//AT1G22410//AT1G17230//ATWRKY17//ATNFXL1//PY GO:0051707 response to other organism BP 0.0090847112153044 ATWRKY27//ATPGMP//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//AT4G33560//AT4G00700//AT1G33440//ALDH1A//LBD41//ATCDC48//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//CML38//AT1G22410//AT1G17230//ATWRKY17//ATNFXL1//PY GO:0009943 adaxial/abaxial axis specification BP 0.00978369820190848 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0055082 cellular chemical homeostasis BP 0.0100018920413362 ATPGMP//ATSOS3//AtGDPD1//ATMT-1//ATGLR3.5 GO:1901701 cellular response to oxygen-containing c... BP 0.0106044031529642 AT5G39890//AT5G15120//AT3G60690//AT3G48760//MSI3//AT4G33560//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//ANAC013//RHA2A GO:0009605 response to external stimulus BP 0.0110690803583055 ATMGD2//UGT72E3//ATWRKY27//ATPGMP//AT5G39890//EMB2024//ATSGS3//AT5G15120//AT3G60690//AT4G33560//AT4G00700//AT1G33440//ALDH1A//MEE31//LBD41//ATCDC48//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//CML38//AtbZIP//ACAM-4//ANAC013//AT1G22410//AT1G17230//ATWRKY17//ATNFXL1//PY GO:0009873 ethylene-activated signaling pathway BP 0.0114605383476914 AT3G44830//AtPEPR2//CML38//AT2G43580 GO:0009955 adaxial/abaxial pattern specification BP 0.0114605383476914 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0007165 signal transduction BP 0.0116689920843973 AT4G14980//AT3G44830//ARFB1B//AtCDC20.4//ATWRKY27//AT5G45210//AT5G39890//ATSOS3//AT5G15120//AT3G60690//AT3G48760//MSI3//AT4G33560//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//ACAM-4//AT2G43580//AT1G17230//RHA2A//AT2G15900//AtRLP20//ATGLR3.5 GO:0009723 response to ethylene BP 0.012113158763401 AT3G44830//AT3G48760//CYP81D8//AtPEPR2//ATMPK11//CML38//AT2G43580//ATMTPB1 GO:0042743 hydrogen peroxide metabolic process BP 0.012113158763401 AT5G49555//AT5G39890//AT5G15120//AT4G33560//LBD41//AT3G10040//ATMPK11//ATNFXL1 GO:0046351 disaccharide biosynthetic process BP 0.0124813604204306 ATPGMP//AT4G10260//AT2G35840 GO:0009311 oligosaccharide metabolic process BP 0.0125304451383019 ATPGMP//OEP6//AT4G10260//AT1G07440//AT2G35840//PY GO:0080167 response to karrikin BP 0.012668385578858 AtCHIL//CYP81D8//AT4G24110//AT1G07440//UGT78D1 GO:0042221 response to chemical BP 0.0130622123666789 AT3G44830//UGT72E3//ADK1//SRO5//ATWRKY27//AT5G39890//ATSOS3//ATSGS3//AT5G15120//AtCHIL//AT3G60690//AT3G48760//CYP81D8//MSI3//AT4G34750//AT4G33560//AGL24//AtNiaP//ALDH1A//JAI3//MEE31//LBD41//ATCDC48//AtGDPD1//AT3G10040//AtPNC1//AtPEPR2//ATMPK11//AT1G02360//CML38//AtbZIP//AT2G43580//AT1G17500//AT1G07440//ANAC013//AT1G17230//RHA2A//ATWRKY17//AT2G36430//AT2G35840//AT1G22690//ATNFXL1//ATMTPB1//PY GO:0055065 metal ion homeostasis BP 0.0133119405143109 ATPGMP//ATSOS3//ATMT-1//ATGLR3.5 GO:0009863 salicylic acid mediated signaling pathwa... BP 0.013327374771294 AT5G39890//AT5G15120//AT3G60690//AT3G48760//AT4G33560//AtNiaP//LBD41//AT3G10040//ATMPK11 GO:0071446 cellular response to salicylic acid stim... BP 0.0141830768311798 AT5G39890//AT5G15120//AT3G60690//AT3G48760//AT4G33560//AtNiaP//LBD41//AT3G10040//ATMPK11 GO:0048878 chemical homeostasis BP 0.0150405215868547 ATPGMP//ATSOS3//AtGDPD1//ATMT-1//AtG3Pp3//ATGLR3.5 GO:0005986 sucrose biosynthetic process BP 0.015575035441518 AT4G10260//AT2G35840 GO:0055081 anion homeostasis BP 0.015575035441518 AtGDPD1//AtG3Pp3 GO:0048507 meristem development BP 0.0176046368767045 MSI3//AT4G33560//AGL24//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0010033 response to organic substance BP 0.0177751666225452 AT3G44830//ADK1//SRO5//ATWRKY27//AT5G39890//ATSGS3//AT5G15120//AtCHIL//AT3G60690//AT3G48760//CYP81D8//MSI3//AT4G34750//AT4G33560//AGL24//AtNiaP//JAI3//MEE31//LBD41//AT3G10040//AtPNC1//AtPEPR2//ATMPK11//AT1G02360//CML38//AT2G43580//AT1G17500//AT1G17230//RHA2A//ATWRKY17//AT2G36430//AT1G22690//ATMTPB1//PY GO:0044700 single organism signaling BP 0.0178150296191498 AT4G14980//AT3G44830//ARFB1B//AtCDC20.4//ATWRKY27//AT5G45210//AT5G39890//ATSOS3//AT5G15120//AT3G60690//AT3G48760//MSI3//AT4G33560//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//ACAM-4//AT2G43580//AT1G17230//RHA2A//AT2G15900//AtRLP20//ATGLR3.5 GO:0023052 signaling BP 0.0182868601691404 AT4G14980//AT3G44830//ARFB1B//AtCDC20.4//ATWRKY27//AT5G45210//AT5G39890//ATSOS3//AT5G15120//AT3G60690//AT3G48760//MSI3//AT4G33560//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//ACAM-4//AT2G43580//AT1G17230//RHA2A//AT2G15900//AtRLP20//ATGLR3.5 GO:0001101 response to acid chemical BP 0.0185406619670389 UGT72E3//ATWRKY27//AT5G39890//AT5G15120//AT3G60690//AT3G48760//AT4G33560//AGL24//AtNiaP//ALDH1A//JAI3//MEE31//LBD41//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//CML38//AtbZIP//ANAC013//RHA2A//AT1G22690 GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 0.0193637048510927 ATPGMP//AT5G49555//EMB2024//AT1G07440//PY GO:0048638 regulation of developmental growth BP 0.0194303719445559 AT4G33560//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0009862 systemic acquired resistance, salicylic ... BP 0.0195688355816909 AT5G39890//AT5G15120//AT3G60690//AT4G33560//LBD41//AT3G10040//ATMPK11 GO:0071554 cell wall organization or biogenesis BP 0.0204062578524851 AT5G04390//ATEXP14//ATPGMP//AT5G39890//AT5G38020//AT5G15120//AT4G39720//AT4G08410//AT1G33440//AtNiaP//AT1G02360//AT2G43580//IXR11//ATMTPB1 GO:0000023 maltose metabolic process BP 0.021244678024123 ATPGMP//OEP6//AT1G07440//PY GO:0006874 cellular calcium ion homeostasis BP 0.0222634294273424 ATPGMP//ATGLR3.5 GO:0044703 multi-organism reproductive process BP 0.022520008646892 AT5G04390//MSI3//AT4G11900//AtNiaP//ATCDC48//EDA30//AT1G01920//AT1G75890//MGP2//ATMTPB1 GO:0006098 pentose-phosphate shunt BP 0.0225699427069638 ATPGMP//EMB2024//AT1G07440//PY GO:0006739 NADP metabolic process BP 0.0225699427069638 ATPGMP//EMB2024//AT1G07440//PY GO:0051156 glucose 6-phosphate metabolic process BP 0.0225699427069638 ATPGMP//EMB2024//AT1G07440//PY GO:0071369 cellular response to ethylene stimulus BP 0.0225699427069638 AT3G44830//AtPEPR2//CML38//AT2G43580 GO:0009312 oligosaccharide biosynthetic process BP 0.0243617110212086 ATPGMP//AT4G10260//AT2G35840 GO:0009799 specification of symmetry BP 0.0253690149714619 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0009855 determination of bilateral symmetry BP 0.0253690149714619 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0055074 calcium ion homeostasis BP 0.025975992941262 ATPGMP//ATGLR3.5 GO:0019932 second-messenger-mediated signaling BP 0.0264203561971026 ATWRKY27//ATSOS3//ACAM-4 GO:0030003 cellular cation homeostasis BP 0.0268435261712896 ATPGMP//ATSOS3//ATMT-1//ATGLR3.5 GO:1901700 response to oxygen-containing compound BP 0.027360956284022 UGT72E3//ADK1//SRO5//ATWRKY27//AT5G39890//AT5G15120//AtCHIL//AT3G60690//AT3G48760//MSI3//AT4G33560//AGL24//AtNiaP//ALDH1A//JAI3//MEE31//LBD41//AT3G10040//AtPEPR2//ATMPK11//AT1G02360//CML38//AtbZIP//AT1G17500//ANAC013//RHA2A//ATWRKY17//AT2G36430//AT1G22690 GO:0009933 meristem structural organization BP 0.0292808849518539 MSI3//AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0005985 sucrose metabolic process BP 0.0299197179736135 AT4G10260//AT2G35840 GO:0019362 pyridine nucleotide metabolic process BP 0.029943987062482 ATPGMP//EMB2024//AT1G07440//PY GO:0046496 nicotinamide nucleotide metabolic proces... BP 0.029943987062482 ATPGMP//EMB2024//AT1G07440//PY GO:0043085 positive regulation of catalytic activit... BP 0.0308084159468436 ATPGMP//AT1G07440//PY GO:0065007 biological regulation BP 0.0311795153601786 DEAR3//AT4G14980//ATMGD2//AT3G44830//ARFB1B//AtCDC20.4//AT5G65320//CYCP4//ATWRKY27//ATPGMP//AT5G45210//AT5G39890//ATSOS3//ATSGS3//AT5G15120//AT5G08565//ANAC079//AT5G05790//OEP6//AT3G60690//AT3G48760//MSI3//AT4G33560//AGL24//AT1G66450//AT2G34140//AT3G27220//PLL4//LBD4//ICK3//AtNiaP//JAI3//AT3G06035//LBD41//AtGDPD1//AT3G10040//ATMT-1//AtPNC1//AtPEPR2//ATMPK11//CML38//AtbZIP//ACAM-4//AT2G43580//AtbZIP52//AT1G07440//IXR11//ANAC013//AT1G17230//RHA2A//AtG3Pp3//ATWRKY17//ATNFXL1//AT2G15900//AtRLP20//ATGLR3.5//AT2G23950//PY//ABE4 GO:0040007 growth BP 0.0314171196196522 AT5G04390//ATEXP14//AT4G33560//AT3G27220//LBD4//AtNiaP//AT3G06035//ATCDC48//AT3G10040//AT3G16270//CHMP1B//MGP2//ATMTPB1//AT2G23950 GO:0048532 anatomical structure arrangement BP 0.0318500653874278 MSI3//AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0071407 cellular response to organic cyclic comp... BP 0.0321748295247075 AT5G39890//ATSGS3//AT5G15120//AT3G60690//AT3G48760//AT4G33560//AtNiaP//LBD41//AT3G10040//ATMPK11 GO:0009627 systemic acquired resistance BP 0.0329082197549778 AT5G39890//AT5G15120//AT3G60690//AT4G33560//AT4G00700//ALDH1A//LBD41//AT3G10040//ATMPK11//AT1G22410 GO:0009856 pollination BP 0.0329619150890258 AT5G04390//AT4G11900//AtNiaP//ATCDC48//EDA30//MGP2//ATMTPB1 GO:0044706 multi-multicellular organism process BP 0.0329619150890258 AT5G04390//AT4G11900//AtNiaP//ATCDC48//EDA30//MGP2//ATMTPB1 GO:0019288 isopentenyl diphosphate biosynthetic pro... BP 0.0331371529062075 ATPGMP//AT5G49555//PY GO:0044093 positive regulation of molecular functio... BP 0.0331371529062075 ATPGMP//AT1G07440//PY GO:0000160 phosphorelay signal transduction system BP 0.0332479364140612 AT3G44830//AtPEPR2//CML38//AT2G43580 GO:0040008 regulation of growth BP 0.0340338336288157 AT4G33560//AT3G27220//LBD4//AT3G06035//AT3G10040//AT2G23950 GO:0006012 galactose metabolic process BP 0.0340841994610362 ATPGMP//GalAK GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 0.0355550801648091 ATPGMP//AT5G49555//PY GO:0046490 isopentenyl diphosphate metabolic proces... BP 0.0355550801648091 ATPGMP//AT5G49555//PY GO:0010014 meristem initiation BP 0.0367567729360978 AT4G33560//AT3G27220//LBD4//AT3G10040 GO:0072524 pyridine-containing compound metabolic p... BP 0.0367567729360978 ATPGMP//EMB2024//AT1G07440//PY GO:0035556 intracellular signal transduction BP 0.0383259313085154 AT4G14980//AT3G44830//ARFB1B//ATWRKY27//ATSOS3//AT3G48760//AtPEPR2//ATMPK11//CML38//ACAM-4//AT2G43580//AT2G15900 GO:0048868 pollen tube development BP 0.0401480985480668 AT5G04390//AtNiaP//ATCDC48//EDA30//MGP2//ATMTPB1 GO:0065009 regulation of molecular function BP 0.0401480985480668 CYCP4//ATPGMP//PLL4//ICK3//AT1G07440//PY GO:0048589 developmental growth BP 0.0405255074807508 AT5G04390//ATEXP14//AT4G33560//AT3G27220//LBD4//AtNiaP//AT3G06035//ATCDC48//AT3G10040//MGP2//ATMTPB1//AT2G23950 GO:0071310 cellular response to organic substance BP 0.0407370164478239 AT3G44830//AT5G39890//ATSGS3//AT5G15120//AT3G60690//AT3G48760//MSI3//AT4G33560//AtNiaP//JAI3//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//AT2G43580//RHA2A GO:0050789 regulation of biological process BP 0.0459725630991555 DEAR3//AT4G14980//ATMGD2//AT3G44830//ARFB1B//AtCDC20.4//AT5G65320//CYCP4//ATWRKY27//ATPGMP//AT5G45210//AT5G39890//ATSOS3//ATSGS3//AT5G15120//AT5G08565//ANAC079//AT5G05790//OEP6//AT3G60690//AT3G48760//MSI3//AT4G33560//AGL24//AT2G34140//AT3G27220//PLL4//LBD4//ICK3//AtNiaP//JAI3//AT3G06035//LBD41//AT3G10040//AtPEPR2//ATMPK11//CML38//AtbZIP//ACAM-4//AT2G43580//AtbZIP52//AT1G07440//IXR11//ANAC013//AT1G17230//RHA2A//ATWRKY17//ATNFXL1//AT2G15900//AtRLP20//ATGLR3.5//AT2G23950//PY//ABE4 GO:0009617 response to bacterium BP 0.0462877612362676 ATWRKY27//ATPGMP//EMB2024//ATCDC48//AtPEPR2//ATMPK11//AT1G17230//ATWRKY17//ATNFXL1//PY