GOID	TERM	ONTOLOGY	pValue	Genes
GO:0009809	lignin biosynthetic process	BP	0.0111158914395128	HCT//AT1G09510
GO:0000086	G2/M transition of mitotic cell cycle	BP	0.0154568876836044	ATMSI1//CYCD3
GO:0010389	regulation of G2/M transition of mitotic...	BP	0.0154568876836044	ATMSI1//CYCD3
GO:0044839	cell cycle G2/M phase transition	BP	0.0154568876836044	ATMSI1//CYCD3
GO:1902749	regulation of cell cycle G2/M phase tran...	BP	0.0154568876836044	ATMSI1//CYCD3
GO:0006661	phosphatidylinositol biosynthetic proces...	BP	0.0178582585040486	AT1G78480//AT1G11880
GO:1901987	regulation of cell cycle phase transitio...	BP	0.0178582585040486	ATMSI1//CYCD3
GO:1901990	regulation of mitotic cell cycle phase t...	BP	0.0178582585040486	ATMSI1//CYCD3
GO:0009808	lignin metabolic process	BP	0.0195413439315197	HCT//AT1G09510
GO:0044770	cell cycle phase transition	BP	0.0195413439315197	ATMSI1//CYCD3
GO:0044772	mitotic cell cycle phase transition	BP	0.0195413439315197	ATMSI1//CYCD3
GO:0007346	regulation of mitotic cell cycle	BP	0.0278882057689753	ATMSI1//CYCD3
GO:0046488	phosphatidylinositol metabolic process	BP	0.0396725471185884	AT1G78480//AT1G11880
GO:0006505	GPI anchor metabolic process	BP	0.0490662220505628	393_
GO:0010955	negative regulation of protein processin...	BP	0.0490662220505628	614_
GO:0045861	negative regulation of proteolysis	BP	0.0490662220505628	614_
GO:0070613	regulation of protein processing	BP	0.0490662220505628	614_
GO:0006275	regulation of DNA replication	BP	0.0504716319823544	ATMSI1//CYCD3
GO:0030162	regulation of proteolysis	BP	0.0538410199904483	614_
GO:0009699	phenylpropanoid biosynthetic process	BP	0.0568779782052514	HCT//AT1G09510
GO:0010564	regulation of cell cycle process	BP	0.0581920058192541	ATMSI1//CYCD3
GO:0006338	chromatin remodeling	BP	0.0585923106541437	821_
GO:0080090	regulation of primary metabolic process	BP	0.0593127544820189	ATMSI1//HCT//AT5G46310//AT5G08460//SMC6A//AT3G45220//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0046474	glycerophospholipid biosynthetic process	BP	0.0608517278634594	AT1G78480//AT1G11880
GO:0006260	DNA replication	BP	0.0628949769783197	ATMSI1//SMC6A//CYCD3
GO:0006743	ubiquinone metabolic process	BP	0.0680248233268734	240_
GO:0006744	ubiquinone biosynthetic process	BP	0.0680248233268734	240_
GO:0045787	positive regulation of cell cycle	BP	0.0680248233268734	821_
GO:0006301	postreplication repair	BP	0.0727062705848588	926_
GO:0051336	regulation of hydrolase activity	BP	0.0727062705848588	614_
GO:0048449	floral organ formation	BP	0.0747494081534102	ATMSI1//SMC6A
GO:0045017	glycerolipid biosynthetic process	BP	0.077641589301929	AT1G78480//AT1G11880
GO:0009889	regulation of biosynthetic process	BP	0.0813458714656446	ATMSI1//HCT//AT5G46310//AT5G08460//SMC6A//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:1901661	quinone metabolic process	BP	0.0866127163828542	240_
GO:1901663	quinone biosynthetic process	BP	0.0866127163828542	240_
GO:0042181	ketone biosynthetic process	BP	0.0912026022301766	240_
GO:0009698	phenylpropanoid metabolic process	BP	0.0941529247768766	HCT//AT1G09510
GO:0051225	spindle assembly	BP	0.0957698733462842	270_
GO:0006650	glycerophospholipid metabolic process	BP	0.0988205419696258	AT1G78480//AT1G11880
GO:0010363	regulation of plant-type hypersensitive ...	BP	0.0998618062919801	AAP3//HCT//AT3G22160
GO:0009225	nucleotide-sugar metabolic process	BP	0.10031463893802	133_
GO:0010193	response to ozone	BP	0.10031463893802	824_
GO:0051052	regulation of DNA metabolic process	BP	0.10355298205268	ATMSI1//CYCD3
GO:0007051	spindle organization	BP	0.104837007695575	270_
GO:0048645	organ formation	BP	0.108347352238158	ATMSI1//SMC6A
GO:0006612	protein targeting to membrane	BP	0.110230659407609	AAP3//HCT//AT3G22160
GO:0080135	regulation of cellular response to stres...	BP	0.110230659407609	AAP3//HCT//AT3G22160
GO:0043067	regulation of programmed cell death	BP	0.112353627179119	AAP3//HCT//AT3G22160
GO:0009626	plant-type hypersensitive response	BP	0.113421100273807	AAP3//HCT//AT3G22160
GO:0015696	ammonium transport	BP	0.11381498690002	389_
GO:0034050	host programmed cell death induced by sy...	BP	0.114492532993104	AAP3//HCT//AT3G22160
GO:0010941	regulation of cell death	BP	0.115567900385933	AAP3//HCT//AT3G22160
GO:0046486	glycerolipid metabolic process	BP	0.118110655499506	AT1G78480//AT1G11880
GO:0015802	basic amino acid transport	BP	0.118270812165533	389_
GO:0043069	negative regulation of programmed cell d...	BP	0.119759319903142	AAP3//AT3G22160
GO:0048444	floral organ morphogenesis	BP	0.119759319903142	ATMSI1//SMC6A
GO:0048563	post-embryonic organ morphogenesis	BP	0.119759319903142	ATMSI1//SMC6A
GO:0060548	negative regulation of cell death	BP	0.121413848040339	AAP3//AT3G22160
GO:0060255	regulation of macromolecule metabolic pr...	BP	0.122455992276414	ATMSI1//AT5G46310//AT5G08460//SMC6A//AT3G45220//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0072657	protein localization to membrane	BP	0.123203537168475	AAP3//HCT//AT3G22160
GO:0090150	establishment of protein localization to...	BP	0.123203537168475	AAP3//HCT//AT3G22160
GO:0010556	regulation of macromolecule biosynthetic...	BP	0.123514284492103	ATMSI1//AT5G46310//AT5G08460//SMC6A//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:2000112	regulation of cellular macromolecule bio...	BP	0.123514284492103	ATMSI1//AT5G46310//AT5G08460//SMC6A//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0019219	regulation of nucleobase-containing comp...	BP	0.125604042541476	ATMSI1//AT5G46310//AT5G08460//SMC6A//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0009886	post-embryonic morphogenesis	BP	0.127649448327669	ATMSI1//SMC6A//CYCD3
GO:0045088	regulation of innate immune response	BP	0.128770069474206	AAP3//HCT//AT3G22160
GO:0050776	regulation of immune response	BP	0.129894297107751	AAP3//HCT//AT3G22160
GO:0016485	protein processing	BP	0.131506908876955	614_
GO:0051171	regulation of nitrogen compound metaboli...	BP	0.133069295940557	ATMSI1//AT5G46310//AT5G08460//SMC6A//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0002682	regulation of immune system process	BP	0.133288364066614	AAP3//HCT//AT3G22160
GO:0031326	regulation of cellular biosynthetic proc...	BP	0.133611462287729	ATMSI1//AT5G46310//AT5G08460//SMC6A//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0070925	organelle assembly	BP	0.135875500221986	270_
GO:0031323	regulation of cellular metabolic process	BP	0.140433355067572	ATMSI1//AT5G46310//AT5G08460//SMC6A//AT3G45220//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:0012501	programmed cell death	BP	0.142491528498702	AAP3//HCT//AT3G22160
GO:0006259	DNA metabolic process	BP	0.142645841946291	ATMSI1//SMC6A//CYCD3//AT2G18600
GO:0008283	cell proliferation	BP	0.143413150245188	ATMSI1//CYCD3
GO:0009805	coumarin biosynthetic process	BP	0.144548150177597	639_
GO:0009804	coumarin metabolic process	BP	0.148852416588503	639_
GO:0048523	negative regulation of cellular process	BP	0.149116653767533	AAP3//SMC6A//AT3G45220//AT3G22160
GO:0032269	negative regulation of cellular protein ...	BP	0.161638218046406	614_
GO:0051248	negative regulation of protein metabolic...	BP	0.161638218046406	614_
GO:0019222	regulation of metabolic process	BP	0.163098482294991	ATMSI1//HCT//AT5G46310//AT5G08460//SMC6A//AT3G45220//CYCD3//ANAC018//AtTLP4//AT4G00270
GO:1903047	mitotic cell cycle process	BP	0.167965613900665	ATMSI1//CYCD3
GO:0009741	response to brassinosteroid	BP	0.170057274880163	270_
GO:0008219	cell death	BP	0.171315523085768	AAP3//HCT//AT3G22160
GO:0016265	death	BP	0.171315523085768	AAP3//HCT//AT3G22160
GO:0006281	DNA repair	BP	0.173321643678546	SMC6A//AT2G18600
GO:0000724	double-strand break repair via homologou...	BP	0.174235663723313	588_
GO:0000725	recombinational repair	BP	0.174235663723313	588_
GO:0051726	regulation of cell cycle	BP	0.175113480177223	ATMSI1//CYCD3
GO:0006862	nucleotide transport	BP	0.194820208589397	389_
GO:0048447	sepal morphogenesis	BP	0.194820208589397	588_
GO:0048451	petal formation	BP	0.194820208589397	588_
GO:0048453	sepal formation	BP	0.194820208589397	588_
GO:0031347	regulation of defense response	BP	0.200395080043103	AAP3//HCT//AT3G22160
GO:0048646	anatomical structure formation involved ...	BP	0.200493963746573	ATMSI1//SMC6A
GO:0022402	cell cycle process	BP	0.201686905233545	ATMSI1//SMC6A//CYCD3
GO:0009555	pollen development	BP	0.202325100566814	ATMSI1//TTL2
GO:0048442	sepal development	BP	0.202912416475403	588_
GO:0048464	flower calyx development	BP	0.202912416475403	588_