GOID TERM ONTOLOGY pValue Genes GO:0046482 para-aminobenzoic acid metabolic process BP 0.000908985857136473 CAX7//GLYI7//UGT1//ATGSTU1 GO:0043687 post-translational protein modification BP 0.00688914535160045 ATXRCC3//SRFR1//RDR2//ATNBS1//VIP5 GO:0009741 response to brassinosteroid BP 0.00820296125497567 AXR5//BHLH136//BIL4//BSK1//AT3G17100//AT3G17950 GO:0045935 positive regulation of nucleobase-contai... BP 0.0106646146096214 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0051173 positive regulation of nitrogen compound... BP 0.0116402619167171 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0051093 negative regulation of developmental pro... BP 0.0143643429216596 SPT//LFY//CGA1//CCS52A2//AGL7//ARR7//VIP5 GO:0010557 positive regulation of macromolecule bio... BP 0.0149897204881446 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0031328 positive regulation of cellular biosynth... BP 0.0166975622772189 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0007623 circadian rhythm BP 0.0174316477132678 SPT//CGA1//KAT2//AT3G12320//ATWNK1//FBI1//ARR7 GO:0048511 rhythmic process BP 0.0174316477132678 SPT//CGA1//KAT2//AT3G12320//ATWNK1//FBI1//ARR7 GO:0010604 positive regulation of macromolecule met... BP 0.0190374554120006 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0045893 positive regulation of transcription, DN... BP 0.0196036435559039 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0051254 positive regulation of RNA metabolic pro... BP 0.0196036435559039 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:1902680 positive regulation of RNA biosynthetic ... BP 0.0196036435559039 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:1903508 positive regulation of nucleic acid-temp... BP 0.0196036435559039 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0019827 stem cell maintenance BP 0.0207654012322683 LFY//CCS52A2//AGL7//ARR7 GO:0048863 stem cell differentiation BP 0.022455502587398 LFY//CCS52A2//AGL7//ARR7 GO:0048864 stem cell development BP 0.022455502587398 LFY//CCS52A2//AGL7//ARR7 GO:0031325 positive regulation of cellular metaboli... BP 0.0232887145664518 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0009891 positive regulation of biosynthetic proc... BP 0.0238850172929066 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//AT3G52800//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0010628 positive regulation of gene expression BP 0.0274770715258976 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//SRFR1//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0040029 regulation of gene expression, epigeneti... BP 0.0285598732018431 DRM1//ATDCP2//PLP3a//SRFR1//AT4G12740//RDR2//ATNBS1//AT3G09360//FDM4//VIP5//SMC3 GO:0016458 gene silencing BP 0.032596141124702 DRM1//ATDCP2//PLP3a//SRFR1//RDR2//ATNBS1//AT3G09360//FDM4//VIP5//SMC3 GO:0006661 phosphatidylinositol biosynthetic proces... BP 0.0329765836064133 AT5G56520//AT3G03870//AT1G63110//APG12//AT1G11880 GO:0045596 negative regulation of cell differentiat... BP 0.0343318308908408 LFY//CCS52A2//AGL7//ARR7 GO:0010583 response to cyclopentenone BP 0.0347376700604086 AXR5//AT5G44000//UGT1//AT2G35730//ATGSTU1 GO:0006284 base-excision repair BP 0.0352854165911435 AT3G50880//AT4G12740 GO:0006505 GPI anchor metabolic process BP 0.0352854165911435 AT1G63110//AT1G11880 GO:0048528 post-embryonic root development BP 0.0423575800257228 AXR5//JKD//ABCB19//WIP3//GF14 GO:0002679 respiratory burst involved in defense re... BP 0.0439357110834361 SCL13//AT5G61560//AT3G52800//CRK28 GO:0045730 respiratory burst BP 0.0439357110834361 SCL13//AT5G61560//AT3G52800//CRK28 GO:0030243 cellulose metabolic process BP 0.0444078653379353 ATCSLB06//ATCESA7//AGP4//AtSec20//VIP5 GO:0017038 protein import BP 0.0458443993299585 AtHGO//ATDCP2//EMB2817//AGY1//IMPA-7//ARI5//SECA2 GO:0030244 cellulose biosynthetic process BP 0.0465490762821945 ATCSLB06//ATCESA7//AtSec20//VIP5 GO:0048506 regulation of timing of meristematic pha... BP 0.0470786818009259 BHLH136//BLH3 GO:0048510 regulation of timing of transition from ... BP 0.0470786818009259 BHLH136//BLH3 GO:0010468 regulation of gene expression BP 0.0474759386441331 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATDCP2//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//AT4G12740//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//FDM4//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SMC3//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0007186 G-protein coupled receptor signaling pat... BP 0.0534393830284022 ATLCBK1//ATGLR3.5 GO:0009893 positive regulation of metabolic process BP 0.0566269395446346 AT4G17810//LEC2//ATXRCC3//AT5G02160//CSY1//AT3G52800//SRFR1//CER9//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2 GO:0006355 regulation of transcription, DNA-templat... BP 0.058805732713977 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:1903506 regulation of nucleic acid-templated tra... BP 0.058805732713977 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:2001141 regulation of RNA biosynthetic process BP 0.058805732713977 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0009081 branched-chain amino acid metabolic proc... BP 0.0600839275845159 ATIVD//MCCB GO:0000956 nuclear-transcribed mRNA catabolic proce... BP 0.0604045894857505 AT5G55600//emb1441//ATDCP2//ARI5//ACR10 GO:0006402 mRNA catabolic process BP 0.0604045894857505 AT5G55600//emb1441//ATDCP2//ARI5//ACR10 GO:0009407 toxin catabolic process BP 0.0604045894857505 AT5G44000//ATGPX4//UGT1//AT2G35730//ATGSTU1 GO:0051273 beta-glucan metabolic process BP 0.0604045894857505 ATCSLB06//ATCESA7//AGP4//AtSec20//VIP5 GO:0090487 secondary metabolite catabolic process BP 0.0604045894857505 AT5G44000//ATGPX4//UGT1//AT2G35730//ATGSTU1 GO:0009624 response to nematode BP 0.0612472316301144 ATCAT6//AT1G76670//AtGRF1 GO:0051252 regulation of RNA metabolic process BP 0.063065607237273 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0008361 regulation of cell size BP 0.0654598744031197 AT5G48900//CCS52A2//ABCB19 GO:0010074 maintenance of meristem identity BP 0.0654598744031197 LFY//CCS52A2//AGL7 GO:0055085 transmembrane transport BP 0.0667522680867667 AtHGO//CAX7//ATDCP2//EMB2817//ATCAT6//KAT2//AT4G03950//AT1G07030//ABCB19//AT1G76670//AT1G14560//ARI5//AT1G47530//ATOCT3//ATCNGC15 GO:0019219 regulation of nucleobase-containing comp... BP 0.0669016307082964 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0006863 purine nucleobase transport BP 0.0671980884335278 AT5G55780//FLA21//AT4G03950//AT1G76670 GO:0015851 nucleobase transport BP 0.0671980884335278 AT5G55780//FLA21//AT4G03950//AT1G76670 GO:0051274 beta-glucan biosynthetic process BP 0.0671980884335278 ATCSLB06//ATCESA7//AtSec20//VIP5 GO:0010556 regulation of macromolecule biosynthetic... BP 0.0675471419805436 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:2000112 regulation of cellular macromolecule bio... BP 0.0675471419805436 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0003002 regionalization BP 0.0693702778952067 ABCB19//BT3//AGL7//JGL//RPK1//AT1G26530//BDL GO:0010033 response to organic substance BP 0.0700942026196931 SCL13//AXR5//DRM1//atnudt21//ATHB40//ANAC102//LFY//AT5G61560//AtHGO//AT5G44000//BHLH136//BIL4//AT3G53250//AT3G52800//ATIVD//BSK1//CGA1//CRK28//CCS52A2//RDR2//AFP2//AT3G12320//ABCB19//BT3//RIN4//AT3G17100//AT3G17950//FBI1//ARR7//VIP5//AT1G76800//RPK1//LOV1//UGT1//GF14//SMC3//ERS2//BDL//AT2G25460//AT2G35730//ATGSTU1//AtGRF1 GO:0045595 regulation of cell differentiation BP 0.070837851873769 LFY//JKD//CCS52A2//AGL7//ARR7 GO:0006401 RNA catabolic process BP 0.0735918118148327 AT5G55600//emb1441//ATDCP2//ARI5//ACR10 GO:0052546 cell wall pectin metabolic process BP 0.0741524765960906 ATCESA7//AGP4 GO:0007389 pattern specification process BP 0.0744810667181763 AT5G48900//RDR2//ABCB19//BT3//AGL7//JGL//RPK1//AT1G26530//BDL GO:0050896 response to stimulus BP 0.0756139187311904 SCL13//AXR5//DRM1//atnudt21//KNAT4//SPT//ATHB40//AT1G57550//ANAC102//LFY//AT5G61560//AT5G57910//ATXRCC3//ATCOL5//AT5G55780//AtHGO//AT5G54200//AT5G44000//BHLH136//ATLCBK1//DRM1//ATCAT6//BIL4//AT3G60290//AT3G53250//AT3G52800//AT3G50880//ATIVD//SRFR1//BSK1//CER9//MCCB//CGA1//AT4G25260//CRK28//KAT2//AT4G12740//CCS52A2//RDR2//AGY1//AHDP//AFP2//AT3G12320//MOS2//ABCB19//BT3//RIN4//AT3G17100//AT3G17950//ATNBS1//AT3G11600//FBI1//ARR7//MLP168//VIP5//AT1G76800//AT1G76670//ATMPK15//AT1G33930//AT1G69170//RPK1//LOV1//AT1G19320//ELF4-L4//ICE2//ARI5//Hsp70b//GLYI7//ATGPX4//AT1G50290//AT1G47530//ATOCT3//APG12//UGT1//GF14//SMC3//ERS2//ACR10//BDL//AT1G27190//UGT73C1//AT2G25460//AT2G35730//ATDET2//GATA2//ATGSTU1//ATGLR3.5//ATMPK17//POP4//AtGRF1 GO:0009072 aromatic amino acid family metabolic pro... BP 0.0797527835900751 AtHGO//AT5G49760//CAX7//GLYI7//UGT1//ATGSTU1 GO:0051171 regulation of nitrogen compound metaboli... BP 0.08141956743723 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0009742 brassinosteroid mediated signaling pathw... BP 0.0815422466188419 BIL4//BSK1 GO:0043401 steroid hormone mediated signaling pathw... BP 0.0815422466188419 BIL4//BSK1 GO:0048545 response to steroid hormone BP 0.0815422466188419 BIL4//BSK1 GO:0071367 cellular response to brassinosteroid sti... BP 0.0815422466188419 BIL4//BSK1 GO:0071383 cellular response to steroid hormone sti... BP 0.0815422466188419 BIL4//BSK1 GO:1901264 carbohydrate derivative transport BP 0.0815422466188419 AT4G03950//AT1G76670 GO:0006497 protein lipidation BP 0.0817523384073433 AT5G66290//AT5G61560//BSK1//AT4G28180//AT1G63110//RPK1//AT1G69610//ATGPX4//AT2G17210//AT1G11880 GO:0042158 lipoprotein biosynthetic process BP 0.0817523384073433 AT5G66290//AT5G61560//BSK1//AT4G28180//AT1G63110//RPK1//AT1G69610//ATGPX4//AT2G17210//AT1G11880 GO:0031326 regulation of cellular biosynthetic proc... BP 0.0821622264150748 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0009404 toxin metabolic process BP 0.0821991946250801 AT5G44000//ATGPX4//UGT1//AT2G35730//ATGSTU1 GO:0002252 immune effector process BP 0.0822819270253433 SCL13//AT5G61560//AT3G52800//MCCB//CRK28//RDR2//SMC3 GO:0042157 lipoprotein metabolic process BP 0.0835011982180485 AT5G66290//AT5G61560//BSK1//AT4G28180//AT1G63110//RPK1//AT1G69610//ATGPX4//AT2G17210//AT1G11880 GO:0014070 response to organic cyclic compound BP 0.0840563143747162 SCL13//AXR5//AT5G44000//BHLH136//BIL4//BSK1//RDR2//BT3//AT3G17100//AT3G17950//VIP5//RPK1//UGT1//SMC3//AT2G35730//ATGSTU1 GO:0009750 response to fructose BP 0.0844026546574078 DRM1//AtHGO//ATIVD//GF14 GO:0048522 positive regulation of cellular process BP 0.0866746009310098 AT4G17810//LEC2//ATXRCC3//AT5G06970//AT5G02160//CSY1//SRFR1//CCS52A2//RDR2//AFP2//ATNBS1//AT3G09360//AGL7//VIP5//GATA2//POP4 GO:0009889 regulation of biosynthetic process BP 0.0879412808122477 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATXR5//JKD//AT5G02160//CSY1//AT3G52800//PLP3a//SRFR1//AT4G33280//CGA1//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0016558 protein import into peroxisome matrix BP 0.0880792498276679 AtHGO//ATDCP2//EMB2817//ARI5 GO:0010029 regulation of seed germination BP 0.0884092225281628 SPT//CGA1//ARR7 GO:0060255 regulation of macromolecule metabolic pr... BP 0.0889460813585183 SCL13//AT4G17810//AXR5//LEC2//KNAT4//SPT//ATHB40//ANAC102//LFY//ATXRCC3//ATCOL5//AT5G44260//DRM1//ATDCP2//ATXR5//JKD//AT5G02160//CSY1//PLP3a//SRFR1//AT4G33280//CGA1//AT4G12740//CCS52A2//RDR2//AFP2//BT3//AT3G17100//ATNBS1//AT3G09360//AGL7//FDM4//ARR7//VIP5//BEE3//AT1G69170//ATRL5//BLH3//ICE2//SMC3//SCL21//BDL//AT2G25650//GATA2//AT2G44730 GO:0010092 specification of organ identity BP 0.089147341894263 AGL7//JGL GO:0010093 specification of floral organ identity BP 0.089147341894263 AGL7//JGL GO:0034655 nucleobase-containing compound catabolic... BP 0.0913176250528159 AT5G55600//emb1441//ATDCP2//ARI5//ACR10 GO:0006625 protein targeting to peroxisome BP 0.0918321604840015 AtHGO//ATDCP2//EMB2817//ARI5 GO:0043574 peroxisomal transport BP 0.0918321604840015 AtHGO//ATDCP2//EMB2817//ARI5 GO:0048527 lateral root development BP 0.0918321604840015 AXR5//JKD//ABCB19//WIP3 GO:0072662 protein localization to peroxisome BP 0.0918321604840015 AtHGO//ATDCP2//EMB2817//ARI5 GO:0072663 establishment of protein localization to... BP 0.0918321604840015 AtHGO//ATDCP2//EMB2817//ARI5 GO:0002238 response to molecule of fungal origin BP 0.0969523364485824 AT5G61560//LOV1 GO:0009816 defense response to bacterium, incompati... BP 0.0969523364485824 SRFR1//RIN4 GO:0016071 mRNA metabolic process BP 0.098313473612667 AT5G55600//emb1441//ATDCP2//RARE1//RDR2//VIP5//AT1G74070//ICE2//ARI5//ACR10 GO:1900140 regulation of seedling development BP 0.098413942584413 SPT//CGA1//ARR7 GO:0002218 activation of innate immune response BP 0.10494243918997 MOS2//RIN4