GOID TERM ONTOLOGY pValue Genes GO:0030029 actin filament-based process BP 0.00151191355323336 SPK1//ATPLC4//ATM2//ARAC8//ARF5//AT3G07540//ATXIG//PLIM2a//AtAUX1//ATHB-14 GO:0009438 methylglyoxal metabolic process BP 0.00240727869246462 PGPS2//SETH3//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0019243 methylglyoxal catabolic process to D-lac... BP 0.00240727869246462 PGPS2//SETH3//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0042182 ketone catabolic process BP 0.00240727869246462 PGPS2//SETH3//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0051596 methylglyoxal catabolic process BP 0.00240727869246462 PGPS2//SETH3//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0042180 cellular ketone metabolic process BP 0.00278262138870952 AT5G10160//PGPS2//SETH3//EOL1//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0046185 aldehyde catabolic process BP 0.00371884899422516 PGPS2//SETH3//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0006089 lactate metabolic process BP 0.00403455015266552 PGPS2//SETH3//AtLpxK//AT1G22800//AT2G25530//PGP1 GO:0009741 response to brassinosteroid BP 0.004369662953988 MAKR1//HERK1//ARF5//AT3G17120//SAUR27//AT2G21200 GO:0000394 RNA splicing, via endonucleolytic cleava... BP 0.00591820504952174 ATSEN2//AT5G51140//AT5G23550//EOL1//ATXPD//AT2G05830 GO:0010162 seed dormancy process BP 0.00619094790930282 ATET2//ACR4//ARAC8//AtGRF2//AtGRF5//RGL//ATHB-14 GO:0022611 dormancy process BP 0.00619094790930282 ATET2//ACR4//ARAC8//AtGRF2//AtGRF5//RGL//ATHB-14 GO:1901615 organic hydroxy compound metabolic proce... BP 0.00703200742062487 SPK1//AT5G21100//AAO2//AtcPT5//AACT2//SQE5//AT3G59580//PGPS2//SETH3//AT3G48460//AtLpxK//AT3G08680//AtCXE5//LEW1//AT1G22800//AT2G25530//AtXYP2//PGP1 GO:0046165 alcohol biosynthetic process BP 0.00703576250586509 SPK1//AT5G21100//AAO2//AtcPT5//AACT2//SQE5//AT3G59580//AT3G48460//AT3G08680//AtCXE5//LEW1//AtXYP2 GO:0010311 lateral root formation BP 0.00772878605374526 ACR4//LACS2//AtAUX1 GO:0010051 xylem and phloem pattern formation BP 0.00953651963591371 KAN//CRM2//ARF5//AT3G07540//IAA20//ATHB-14 GO:0030036 actin cytoskeleton organization BP 0.0103325523171084 SPK1//ARAC8//ARF5//AT3G07540//PLIM2a//AtAUX1//ATHB-14 GO:0010431 seed maturation BP 0.0127074859495658 ATET2//ACR4//ARAC8//AtGRF2//AtGRF5//RGL//ATHB-14 GO:0019321 pentose metabolic process BP 0.0140645515556652 ATPLC4//ATUXS1//AT4G28706 GO:0048609 multicellular organismal reproductive pr... BP 0.0155482600515924 ATET2//ATXR6//ACR4//AT3G50990//ARAC8//AtGRF2//AtGRF5//RGL//EMB2217//AT2G05120//ATHB-14 GO:0010101 post-embryonic root morphogenesis BP 0.0159951371276552 ACR4//LACS2//AtAUX1 GO:0010102 lateral root morphogenesis BP 0.0159951371276552 ACR4//LACS2//AtAUX1 GO:0016126 sterol biosynthetic process BP 0.016199865385941 SPK1//AT5G21100//AACT2//SQE5//AT3G08680//AtCXE5//AtXYP2 GO:0007389 pattern specification process BP 0.0170931787425376 SPK1//KAN//CRM2//EOL1//ARF5//EPF1//AT3G08680//AT3G07540//IAA20//AtAUX1//ATHB-14 GO:0006928 movement of cell or subcellular componen... BP 0.0190127668728869 AT5G66310//AT5G60930//ATPLC4//ATM2//AT3G10310//ATXIG GO:0009944 polarity specification of adaxial/abaxia... BP 0.0190344064465797 KAN//CRM2//ARF5//AT3G07540//ATHB-14 GO:0016125 sterol metabolic process BP 0.0194464147099072 SPK1//AT5G21100//AACT2//SQE5//AT3G08680//AtCXE5//AtXYP2 GO:0009943 adaxial/abaxial axis specification BP 0.020247077717083 KAN//CRM2//ARF5//AT3G07540//ATHB-14 GO:0065001 specification of axis polarity BP 0.020247077717083 KAN//CRM2//ARF5//AT3G07540//ATHB-14 GO:0007015 actin filament organization BP 0.0221288624583869 SPK1//ARAC8//ARF5//PLIM2a//AtAUX1//ATHB-14 GO:0007010 cytoskeleton organization BP 0.0223886740085366 SPK1//ATNADP-ME3//ATXR6//ATHAM2//ARAC8//ARF5//AT3G08680//AT3G07540//AT3G10310//AT1G23790//PLIM2a//AtAUX1//EMB2795//ATHB-14 GO:0009798 axis specification BP 0.0228216184965583 KAN//CRM2//ARF5//AT3G07540//ATHB-14 GO:0032504 multicellular organism reproduction BP 0.0237514007004199 ATET2//ATXR6//ACR4//AT3G50990//ARAC8//AtGRF2//AtGRF5//RGL//EMB2217//AT2G05120//ATHB-14 GO:0048829 root cap development BP 0.0237750121913847 ACR4//AtAUX1 GO:0009955 adaxial/abaxial pattern specification BP 0.0241847970003515 KAN//CRM2//ARF5//AT3G07540//ATHB-14 GO:0009855 determination of bilateral symmetry BP 0.0267956155670954 SPK1//CRM2//EOL1//ARF5//AT3G07540//ATHB-14 GO:0032506 cytokinetic process BP 0.0275078107536836 SPK1//AT5G60930//ATXR6//AT5G11480//ACR4//AT3G10310//AT1G23790//EMB2795 GO:1902410 mitotic cytokinetic process BP 0.0275078107536836 SPK1//AT5G60930//ATXR6//AT5G11480//ACR4//AT3G10310//AT1G23790//EMB2795 GO:0009799 specification of symmetry BP 0.0280567651904643 SPK1//CRM2//EOL1//ARF5//AT3G07540//ATHB-14 GO:0097305 response to alcohol BP 0.0281225210659036 ALDH3H1//MAKR1//ATTBP3//ACR4//ARAC8//HERK1//AtGRF2//ARF5//AT3G17120//AtGRF5//SAUR27//RGL//AT2G21200 GO:0006066 alcohol metabolic process BP 0.0282920480445565 SPK1//AT5G21100//AAO2//AtcPT5//AACT2//SQE5//AT3G59580//AT3G48460//AT3G08680//AtCXE5//LEW1//AtXYP2 GO:0016093 polyprenol metabolic process BP 0.0285936602648103 AtcPT5//LEW1 GO:0016094 polyprenol biosynthetic process BP 0.0285936602648103 AtcPT5//LEW1 GO:0019348 dolichol metabolic process BP 0.0285936602648103 AtcPT5//LEW1 GO:0019408 dolichol biosynthetic process BP 0.0285936602648103 AtcPT5//LEW1 GO:0048527 lateral root development BP 0.0297835661888047 ACR4//ARF5//LACS2//AtAUX1 GO:0009887 organ morphogenesis BP 0.0308010819408417 KAN//ACR4//AtGRF2//CRM2//ARF5//DAL//AtGRF5//AT3G07540//RGL//LACS2//AT1G23790//IAA20//AtAUX1//ATHB-14//AtSPL9 GO:0010267 production of ta-siRNAs involved in RNA ... BP 0.0317827749557051 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0000281 mitotic cytokinesis BP 0.032708698587087 SPK1//AT5G60930//ATXR6//AT5G11480//ACR4//AT3G10310//AT1G23790//EMB2795 GO:0061640 cytoskeleton-dependent cytokinesis BP 0.032708698587087 SPK1//AT5G60930//ATXR6//AT5G11480//ACR4//AT3G10310//AT1G23790//EMB2795 GO:0042732 D-xylose metabolic process BP 0.0337648255041907 ATPLC4//ATUXS1 GO:0048528 post-embryonic root development BP 0.0361532888680259 ACR4//ARF5//LACS2//AtAUX1 GO:0010638 positive regulation of organelle organiz... BP 0.0369843685538698 SPK1//ARF5//ATPOT1//AtAUX1//ATHB-14 GO:1901617 organic hydroxy compound biosynthetic pr... BP 0.0370912916364563 SPK1//AT5G21100//AAO2//AtcPT5//AACT2//SQE5//AT3G59580//AT3G48460//AT3G08680//AtCXE5//LEW1//AtXYP2 GO:1901699 cellular response to nitrogen compound BP 0.037986627831171 AT4G32620//CRM2//EOL1//ATRTL2//ACP//AT2G05830 GO:0051130 positive regulation of cellular componen... BP 0.0407261976596072 SPK1//ARF5//ATPOT1//AtAUX1//ATHB-14 GO:0000910 cytokinesis BP 0.0436878283311204 SPK1//AT5G60930//ATXR6//AT5G11480//ACR4//AT3G10310//AT1G23790//EMB2795 GO:0010014 meristem initiation BP 0.0445545865724069 SPK1//CRM2//EOL1//ARF5//AT3G07540//ATHB-14 GO:0009965 leaf morphogenesis BP 0.0478301059325899 AtGRF2//CRM2//ARF5//DAL//AtGRF5//IAA20//ATHB-14//AtSPL9 GO:0010015 root morphogenesis BP 0.0485462408026611 iqd2//ATHAM2//ACR4//ARF5//AT3G08680//RHS12//LACS2//ROPGAP3//AtAUX1//ATHB-14 GO:0071554 cell wall organization or biogenesis BP 0.0500093553281466 ATNADP-ME3//ATROPGEF5//GLP10//GAUT1//AT3G50990//ATCSLC05//AT4G18395//SAH7//EOL1//ARF5//AT3G08680//RHS12//ATCYSD1//AT1G72230//AtCXE5//AT2G10970//ROPGAP3//AtAUX1//ATHB-14 GO:0006694 steroid biosynthetic process BP 0.0503440234710119 SPK1//AT5G21100//AACT2//SQE5//AT3G08680//AtCXE5//AtXYP2 GO:0009086 methionine biosynthetic process BP 0.0510751438228342 AT5G51140//AT5G23550//EOL1//AT2G05830 GO:0055114 oxidation-reduction process BP 0.0521945276826441 ALDH3H1//AT5G21100//AAO2//AT5G15070//ATNADP-ME3//AT5G42280//AT5G40150//SQE5//AT3G46490//sks9//SKS1//CYP71B34//IDI2//ATHY2//AtErv1//AT1G72190//CYP86A7//AT1G22430//CYP71B2//AT2G24580//HEMA3//G6PD4//CYP86C1//AT2G22650 GO:0035196 production of miRNAs involved in gene si... BP 0.0532876084964772 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:1903047 mitotic cell cycle process BP 0.0555176279927114 SPK1//AT5G60930//AtMAD1//ATXR6//AT5G11480//ACR4//AT3G10310//AT1G23790//EMB2795 GO:0009688 abscisic acid biosynthetic process BP 0.0575842459622484 AAO2//AT3G59580 GO:0043289 apocarotenoid biosynthetic process BP 0.0575842459622484 AAO2//AT3G59580 GO:1902645 tertiary alcohol biosynthetic process BP 0.0575842459622484 AAO2//AT3G59580 GO:0016246 RNA interference BP 0.0576653277674092 AT4G32620//CRM2//EOL1//ARF5//ATRTL2//ACP GO:0006334 nucleosome assembly BP 0.0578027280943608 ATTBP3//AT3G53650//AT3G27360 GO:0030048 actin filament-based movement BP 0.0578027280943608 ATPLC4//ATM2//ATXIG GO:0034728 nucleosome organization BP 0.0578027280943608 ATTBP3//AT3G53650//AT3G27360 GO:0035195 gene silencing by miRNA BP 0.0579230756035039 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0006555 methionine metabolic process BP 0.0596231904474705 AT5G51140//AT5G23550//EOL1//AT2G05830 GO:0044283 small molecule biosynthetic process BP 0.0602315960504094 SPK1//AT5G21100//AAO2//AtcPT5//AT5G51140//AACT2//SQE5//AT5G23550//AT5G10160//AT3G59580//AT3G48460//HISN7//AT4G13050//SAH7//EOL1//AT3G08680//ATCYSD1//ACP//AT1G72190//ATUGD1//AtCXE5//LACS2//LEW1//AtXYP2//AT2G05830//NAGS1 GO:0000911 cytokinesis by cell plate formation BP 0.0607718473410577 SPK1//AT5G60930//ATXR6//ACR4//AT3G10310//AT1G23790//EMB2795 GO:0030838 positive regulation of actin filament po... BP 0.0626315032893503 SPK1//ARF5//AtAUX1//ATHB-14 GO:0031334 positive regulation of protein complex a... BP 0.0626315032893503 SPK1//ARF5//AtAUX1//ATHB-14 GO:0032273 positive regulation of protein polymeriz... BP 0.0626315032893503 SPK1//ARF5//AtAUX1//ATHB-14 GO:0045010 actin nucleation BP 0.0626315032893503 SPK1//ARF5//AtAUX1//ATHB-14 GO:0051495 positive regulation of cytoskeleton orga... BP 0.0626315032893503 SPK1//ARF5//AtAUX1//ATHB-14 GO:0035194 posttranscriptional gene silencing by RN... BP 0.0639230113367309 AT4G32620//CRM2//EOL1//ARF5//ATRTL2//ACP GO:0009880 embryonic pattern specification BP 0.0642316406167155 ARF5//ATHB-14 GO:0044089 positive regulation of cellular componen... BP 0.0657184664185868 SPK1//ARF5//AtAUX1//ATHB-14 GO:0065004 protein-DNA complex assembly BP 0.0659319382320842 ATTBP3//AT3G53650//AT3G27360 GO:0071824 protein-DNA complex subunit organization BP 0.0659319382320842 ATTBP3//AT3G53650//AT3G27360 GO:0048569 post-embryonic organ development BP 0.0660354586821883 AGL72//ATXR6//KAN//ACR4//AT3G49560//CRM2//ARF5//AtGRF5//AT1G12460//RGL//LACS2//AT1G23790//AtAUX1//ATHB-14//AtSPL9 GO:0030422 production of siRNA involved in RNA inte... BP 0.0678660844369204 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0016441 posttranscriptional gene silencing BP 0.068308714340663 AT4G32620//CRM2//EOL1//ARF5//ATRTL2//ACP GO:0051301 cell division BP 0.0690484497085434 SPK1//AT5G60930//ATXR6//AT5G11480//ATHAM2//ACR4//AT3G10310//AT1G23790//EMB2795//ATHB-14 GO:0008202 steroid metabolic process BP 0.0704047354699001 SPK1//AT5G21100//AACT2//SQE5//AT3G08680//AtCXE5//AtXYP2 GO:0048645 organ formation BP 0.0704047354699001 ACR4//CRM2//AtGRF5//LACS2//AT1G23790//AtAUX1//AtSPL9 GO:0031050 dsRNA fragmentation BP 0.0704911627582397 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0043331 response to dsRNA BP 0.0704911627582397 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0070918 production of small RNA involved in gene... BP 0.0704911627582397 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0071359 cellular response to dsRNA BP 0.0704911627582397 AT4G32620//CRM2//EOL1//ATRTL2//ACP GO:0006949 syncytium formation BP 0.0711220365773239 AT3G55420//AtAUX1 GO:0016106 sesquiterpenoid biosynthetic process BP 0.0711220365773239 AAO2//AT3G59580 GO:0035725 sodium ion transmembrane transport BP 0.0711220365773239 AT3G56160//BASS2