GOID TERM ONTOLOGY pValue Genes GO:0009733 response to auxin BP 0.00132789472386616 ATMYB75//B73//AIL6//AT1G78990//SAUR28//ABCB14//AT1G29490//ATMYB2//AT2G24400//GIK GO:0072350 tricarboxylic acid metabolic process BP 0.0018252176967498 AT5G65750//AT5G55070//ATNAS1//ACO1 GO:0009734 auxin-activated signaling pathway BP 0.00302103182412052 B73//AIL6//AT1G78990//ABCB14 GO:0006289 nucleotide-excision repair BP 0.00449299172868534 AtAO1//ATOGG1//AtPol{lambda} GO:0071365 cellular response to auxin stimulus BP 0.00515315662725686 B73//AIL6//AT1G78990//ABCB14 GO:0034614 cellular response to reactive oxygen spe... BP 0.00610397586390216 ATMYB75//ATNAS1//EMB93 GO:0006101 citrate metabolic process BP 0.00801889010471305 AT5G65750//AT5G55070//ACO1 GO:0010876 lipid localization BP 0.00853781497523847 FY//HS//OLE1//AT4G22460//AT3G07450//PSD//AT1G73780//AT2G37870 GO:0034599 cellular response to oxidative stress BP 0.0102497409280226 ATMYB75//ATNAS1//EMB93 GO:0010074 maintenance of meristem identity BP 0.0128058375564973 FY//LFY//AIL6 GO:0009057 macromolecule catabolic process BP 0.0184423266261638 UBP8//ARABIDILLO-2//AtVAB2//AT4G33160//MOS1//ATATE2//AT1G66630//AT3G27240//SPY//AT1G17680//AtAO1//AMY2//CYCA2;3//BE3 GO:0019827 stem cell maintenance BP 0.020658488631414 FY//LFY//AIL6 GO:0048864 stem cell development BP 0.020658488631414 FY//LFY//AIL6 GO:0048863 stem cell differentiation BP 0.0224830531287202 FY//LFY//AIL6 GO:0006284 base-excision repair BP 0.028237741794272 AtAO1//ATOGG1 GO:0055085 transmembrane transport BP 0.0298304343187155 ATSUC6//GGT2//AtVAB2//ATTIP1.3//ABCC7//ABCB14//ATPEX7//GONST2//AT1G49960//AT1G72820//SLAH1//AT1G05030//GIK//AT2G30160 GO:0009756 carbohydrate mediated signaling BP 0.0301878859611359 ATMYB75//FY//OLE1//PSD GO:0010182 sugar mediated signaling pathway BP 0.0301878859611359 ATMYB75//FY//OLE1//PSD GO:0045596 negative regulation of cell differentiat... BP 0.030630302611866 FY//LFY//AIL6 GO:0006406 mRNA export from nucleus BP 0.0328782860810962 FY//OLE1//PSD GO:0051028 mRNA transport BP 0.0328782860810962 FY//OLE1//PSD GO:0071322 cellular response to carbohydrate stimul... BP 0.0334007709976727 ATMYB75//FY//OLE1//PSD GO:0006869 lipid transport BP 0.03616949566726 HS//AT4G22460//AT3G07450//AT1G73780//AT2G37870 GO:0009736 cytokinin-activated signaling pathway BP 0.0376249018582944 AT1G78990//SPY//AT2G43670 GO:0048527 lateral root development BP 0.0385807606509223 AtTHAS1//ARABIDILLO-2//CYCA2;3//ARABIDILLO-1 GO:0007018 microtubule-based movement BP 0.0401224233526552 KCBP//AT3G63480//AT1G09170 GO:0071368 cellular response to cytokinin stimulus BP 0.0401224233526552 AT1G78990//SPY//AT2G43670 GO:0000272 polysaccharide catabolic process BP 0.0406611609762106 AMY2//BE3 GO:0006508 proteolysis BP 0.0420012725876286 UBP8//ARABIDILLO-2//AtVAB2//AT4G33160//AT1G20380//ATATE2//AT1G66630//AT3G27240//scpl21//AT1G06900//AT1G32980//AtAO1//CYCA2;3//SCPL43//AT2G07240 GO:0006403 RNA localization BP 0.0481036807554009 FY//OLE1//PSD GO:0006405 RNA export from nucleus BP 0.0481036807554009 FY//OLE1//PSD GO:0050657 nucleic acid transport BP 0.0481036807554009 FY//OLE1//PSD GO:0050658 RNA transport BP 0.0481036807554009 FY//OLE1//PSD GO:0051236 establishment of RNA localization BP 0.0481036807554009 FY//OLE1//PSD GO:0044265 cellular macromolecule catabolic process BP 0.0496334659955925 UBP8//ARABIDILLO-2//AtVAB2//AT4G33160//MOS1//ATATE2//AT1G66630//AT3G27240//SPY//AT1G17680//AtAO1//CYCA2;3 GO:0006099 tricarboxylic acid cycle BP 0.0498787500247407 AT5G65750//AT5G55070 GO:0019742 pentacyclic triterpenoid metabolic proce... BP 0.0498787500247407 AtTHAS1//SQP2 GO:0019745 pentacyclic triterpenoid biosynthetic pr... BP 0.0498787500247407 AtTHAS1//SQP2 GO:0048528 post-embryonic root development BP 0.0502440663271509 AtTHAS1//ARABIDILLO-2//CYCA2;3//ARABIDILLO-1 GO:0009060 aerobic respiration BP 0.0509243523041172 AT5G65750//AT5G55070//AT3G27240 GO:0051168 nuclear export BP 0.0538236806143738 FY//OLE1//PSD GO:0016104 triterpenoid biosynthetic process BP 0.0547426138203894 AtTHAS1//SQP2 GO:0006810 transport BP 0.0593155549611663 FY//B73//AT1G31780//CBP60G//PSL5//AT5G51160//ATSUC6//AT5G24170//AT5G05310//ATNAS1//HS//AT3G44180//AT3G42770//GGT2//CRK26//AtVAB2//ACO1//OLE1//AT4G22460//ATTIP1.3//ABCC7//AT3G07250//AT3G21710//SIEL//AT3G07450//AT1G17680//ABCB14//PSD//AT1G73780//AT1G06890//ATPEX7//GONST2//AT1G49960//AT1G72820//AT1G49260//SLAH1//AT1G05030//ARL2//AT2G37870//ATGLR3.5//GIK//AT2G30840//AT2G30160 GO:0048523 negative regulation of cellular process BP 0.0672139340681207 FY//B73//CBP60G//LFY//ATOFP3//AT5G48310//AIL6//AtVAB2//SPY//AT1G67570//CYCA2;3//GEM1//GIK GO:0007017 microtubule-based process BP 0.0679379277506052 KCBP//AT3G63480//AtGIP2//CYCA2;3//AT1G09170//ARL2//GEM1 GO:0051234 establishment of localization BP 0.0681170682957783 FY//B73//AT1G31780//CBP60G//PSL5//AT5G51160//ATSUC6//AT5G24170//AT5G05310//ATNAS1//HS//AT3G44180//AT3G42770//GGT2//CRK26//AtVAB2//ACO1//OLE1//AT4G22460//ATTIP1.3//ABCC7//AT3G07250//AT3G21710//SIEL//AT3G07450//AT1G17680//ABCB14//PSD//AT1G73780//AT1G06890//ATPEX7//GONST2//AT1G49960//AT1G72820//AT1G49260//SLAH1//AT1G05030//ARL2//AT2G37870//ATGLR3.5//GIK//AT2G30840//AT2G30160 GO:0015931 nucleobase-containing compound transport BP 0.0684733631820287 FY//OLE1//PSD//GONST2 GO:0006722 triterpenoid metabolic process BP 0.0702591516325644 AtTHAS1//SQP2 GO:0006511 ubiquitin-dependent protein catabolic pr... BP 0.0742789575240283 UBP8//ARABIDILLO-2//AT4G33160//ATATE2//AT1G66630//AT3G27240//AtAO1//CYCA2;3 GO:0010039 response to iron ion BP 0.0757145526057046 ATNAS1//ACO1 GO:0009845 seed germination BP 0.076766590134678 FY//GAMT2//OLE1//ATATE2//PSD GO:1901701 cellular response to oxygen-containing c... BP 0.076837128828925 ATMYB75//FY//B73//CBP60G//LFY//AT5G39890//ATNAS1//OLE1//SPY//PSD//ATMYB2//EMB93 GO:0019941 modification-dependent protein catabolic... BP 0.0802226453122293 UBP8//ARABIDILLO-2//AT4G33160//ATATE2//AT1G66630//AT3G27240//AtAO1//CYCA2;3 GO:0043632 modification-dependent macromolecule cat... BP 0.0802226453122293 UBP8//ARABIDILLO-2//AT4G33160//ATATE2//AT1G66630//AT3G27240//AtAO1//CYCA2;3 GO:0050826 response to freezing BP 0.0832837253294301 FY//OLE1//PSD GO:0090351 seedling development BP 0.0833549286375027 FY//GAMT2//OLE1//ATATE2//PSD GO:0071310 cellular response to organic substance BP 0.0858975200910353 ATMYB75//FY//B73//CBP60G//LFY//AT5G41100//AT5G39890//AIL6//ATNAS1//OLE1//AT1G78990//SPY//ABCB14//PSD//ATMYB2//AT2G43670 GO:0010038 response to metal ion BP 0.0870622113487735 AT5G65750//PSL5//AT5G55070//AT5G51160//ATNAS1//ACO1//AT3G27240//ATMYB2//ARFA1F GO:0009735 response to cytokinin BP 0.0906014404310435 AT1G78990//SPY//AT2G43670 GO:0070887 cellular response to chemical stimulus BP 0.0923510964551686 ATMYB75//FY//B73//CBP60G//LFY//AT5G41100//AT5G39890//AIL6//ATNAS1//OLE1//AT1G78990//SPY//ABCB14//PSD//ATMYB2//AT2G43670//EMB93 GO:0015980 energy derivation by oxidation of organi... BP 0.0925025640457339 AT5G65750//AT5G55070//AT3G27240//AMY2 GO:0000956 nuclear-transcribed mRNA catabolic proce... BP 0.0943577743907092 MOS1//SPY//AT1G17680 GO:0006402 mRNA catabolic process BP 0.0943577743907092 MOS1//SPY//AT1G17680 GO:0019915 lipid storage BP 0.0943577743907092 FY//OLE1//PSD GO:1990267 response to transition metal nanoparticl... BP 0.0943577743907092 AT5G51160//ATNAS1//ACO1 GO:0051179 localization BP 0.0977265454735791 FY//B73//AT1G31780//CBP60G//PSL5//AT5G51160//ATSUC6//AT5G24170//AT5G05310//ATNAS1//HS//AT3G44180//AT3G42770//GGT2//CRK26//AtVAB2//ACO1//OLE1//AT4G22460//ATTIP1.3//ABCC7//AT3G07250//AT3G21710//SIEL//ATSUN2//AT3G07450//AT1G17680//ABCB14//PSD//AT1G73780//AT1G06890//ATPEX7//GONST2//AT1G49960//AT1G72820//AT1G49260//SLAH1//AT1G05030//ARL2//AT2G37870//ATGLR3.5//GIK//AT2G30840//AT2G30160 GO:0051603 proteolysis involved in cellular protein... BP 0.110733911079162 UBP8//ARABIDILLO-2//AtVAB2//AT4G33160//ATATE2//AT1G66630//AT3G27240//AtAO1//CYCA2;3 GO:0006401 RNA catabolic process BP 0.11405931986506 MOS1//SPY//AT1G17680 GO:1901575 organic substance catabolic process BP 0.115275657006493 CYP702A2//UBP8//AT5G65750//AT5G04910//ARABIDILLO-2//GGT2//AtVAB2//ACO1//AT4G33160//MOS1//ATATE2//AT1G66630//AT3G27240//SPY//AT1G17680//ATPEX7//AtAO1//AMY2//CYCA2;3//BE3 GO:0046686 response to cadmium ion BP 0.118560169066208 AT5G65750//PSL5//AT5G55070//ACO1//AT3G27240//ATMYB2//ARFA1F GO:0044257 cellular protein catabolic process BP 0.119355251034842 UBP8//ARABIDILLO-2//AtVAB2//AT4G33160//ATATE2//AT1G66630//AT3G27240//AtAO1//CYCA2;3 GO:0010564 regulation of cell cycle process BP 0.133209934409346 FY//AT5G48310//CYCA2;3//GEM1 GO:0010228 vegetative to reproductive phase transit... BP 0.135867941435443 FY//ATEB1//AT5G04910//OLE1//AT1G17680//PSD//AT1G67570 GO:0009740 gibberellic acid mediated signaling path... BP 0.136334524585753 LFY//SPY GO:0055114 oxidation-reduction process BP 0.137125155113429 CYP702A2//KCBP//AT5G65750//AT5G55770//AT5G55070//AT5G39890//SQP2//AT5G04910//AT3G50010//ATCAD6//SKS1//AT3G27240//CYP71B17//AOX1B//ATPEX7//AMY2//AT2G37130//AT2G28270//AT2G30840 GO:0030163 protein catabolic process BP 0.137664016536539 UBP8//ARABIDILLO-2//AtVAB2//AT4G33160//ATATE2//AT1G66630//AT3G27240//AtAO1//CYCA2;3 GO:0010476 gibberellin mediated signaling pathway BP 0.142871981883962 LFY//SPY GO:0071370 cellular response to gibberellin stimulu... BP 0.14947443360585 LFY//SPY GO:0032870 cellular response to hormone stimulus BP 0.153099131007477 B73//CBP60G//LFY//AIL6//ATNAS1//AT1G78990//SPY//ABCB14//ATMYB2//AT2G43670 GO:0071495 cellular response to endogenous stimulus BP 0.153099131007477 B73//CBP60G//LFY//AIL6//ATNAS1//AT1G78990//SPY//ABCB14//ATMYB2//AT2G43670 GO:0034655 nucleobase-containing compound catabolic... BP 0.157492129641291 MOS1//SPY//AT1G17680 GO:0051235 maintenance of location BP 0.157492129641291 FY//OLE1//PSD GO:0006091 generation of precursor metabolites and ... BP 0.161566514450411 CBP60G//AT5G65750//AT5G55070//ACO1//AT3G27240//AT3G09490//AMY2 GO:0098656 anion transmembrane transport BP 0.16285524165631 GGT2//GIK GO:0009725 response to hormone BP 0.165234258343713 ATMYB75//B73//CBP60G//LFY//AIL6//ATNAS1//ATATE2//AT3G28580//AT1G78990//SPY//SAUR28//ABCB14//AT1G29490//ATMYB2//AT2G43670//AT2G24400//GIK GO:0044765 single-organism transport BP 0.169437530095058 B73//AT1G31780//CBP60G//PSL5//AT5G51160//ATSUC6//ATNAS1//HS//AT3G44180//AT3G42770//GGT2//CRK26//AtVAB2//ACO1//OLE1//AT4G22460//ATTIP1.3//ABCC7//AT3G21710//AT3G07450//ABCB14//PSD//AT1G73780//AT1G06890//ATPEX7//GONST2//AT1G49960//AT1G72820//AT1G49260//SLAH1//AT1G05030//AT2G37870//GIK//AT2G30840//AT2G30160 GO:0010162 seed dormancy process BP 0.171400379277002 FY//OLE1//PSD GO:0022611 dormancy process BP 0.171400379277002 FY//OLE1//PSD GO:0006518 peptide metabolic process BP 0.174937050506803 907_ GO:0071732 cellular response to nitric oxide BP 0.174937050506803 832_ GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.17644034531087 ATMYB75//BAN GO:0009890 negative regulation of biosynthetic proc... BP 0.17645044697898 ATOFP3//AT5G48310//SPY//AT1G67570//BAN//GEM1//GIK GO:0044036 cell wall macromolecule metabolic proces... BP 0.176763051096649 AT5G39890//AIL6//MOS1//AT4G22460//AT3G21710 GO:0051093 negative regulation of developmental pro... BP 0.180861693141895 FY//LFY//AIL6 GO:1902578 single-organism localization BP 0.184596780890879 B73//AT1G31780//CBP60G//PSL5//AT5G51160//ATSUC6//ATNAS1//HS//AT3G44180//AT3G42770//GGT2//CRK26//AtVAB2//ACO1//OLE1//AT4G22460//ATTIP1.3//ABCC7//AT3G21710//AT3G07450//ABCB14//PSD//AT1G73780//AT1G06890//ATPEX7//GONST2//AT1G49960//AT1G72820//AT1G49260//SLAH1//AT1G05030//AT2G37870//GIK//AT2G30840//AT2G30160 GO:0071705 nitrogen compound transport BP 0.187415443472312 FY//AT5G51160//AT3G44180//AT3G42770//GGT2//CRK26//OLE1//ATTIP1.3//AT3G21710//PSD//GONST2//AT1G49260 GO:0007186 G-protein coupled receptor signaling pat... BP 0.190659108942024 337_ GO:0010540 basipetal auxin transport BP 0.190659108942024 579_ GO:0010639 negative regulation of organelle organiz... BP 0.190659108942024 998_ GO:0051129 negative regulation of cellular componen... BP 0.190659108942024 998_