GOID TERM ONTOLOGY pValue Genes GO:0009851 auxin biosynthetic process BP 0.00282412737262101 AtPLT6//IMS2//AST68//AtPIF4//SCPL8 GO:0009850 auxin metabolic process BP 0.00393811256397836 AtPLT6//IMS2//AST68//AtPIF4//SCPL8 GO:1901564 organonitrogen compound metabolic proces... BP 0.00759836911241527 AtPLT6//ATCYSD2//ATPTS//IMS2//GAD//AST68//ATNAS1//AT3G53940//AT3G45900//AT4G35820//AGP12//PYRB//AT3G12930//AT3G19480//ATGSTU12//ATSCO1//AT1G62780//AtTRM82//AT1G31220//PUR2//NATA1//AT2G25830//AT2G19940//AT2G30840//SCPL8 GO:0050801 ion homeostasis BP 0.00910495694685995 ATGLR2.1//AST68//SLAH1//AtPIF4//AtG3Pp5//ATGLR3.5 GO:0009684 indoleacetic acid biosynthetic process BP 0.0101573157111282 AtPLT6//IMS2//AST68//SCPL8 GO:0034754 cellular hormone metabolic process BP 0.0105499574962547 AtPLT6//IMS2//AST68//AT2G30840//SCPL8 GO:0009683 indoleacetic acid metabolic process BP 0.0108099323054572 AtPLT6//IMS2//AST68//SCPL8 GO:0006575 cellular modified amino acid metabolic p... BP 0.0129282501293116 ATPTS//AT4G35820//AGP12//ATGSTU12 GO:0048878 chemical homeostasis BP 0.0133383799724003 ATGLR2.1//AST68//SLAH1//AtPIF4//AtG3Pp5//ATGLR3.5 GO:0071478 cellular response to radiation BP 0.0152533349232873 RPL10//AtPIF4//ELF4 GO:0071482 cellular response to light stimulus BP 0.0152533349232873 RPL10//AtPIF4//ELF4 GO:0006873 cellular ion homeostasis BP 0.0163891701252468 ATGLR2.1//AST68//SLAH1//AtPIF4//ATGLR3.5 GO:0006520 cellular amino acid metabolic process BP 0.0168935952647147 AtPLT6//ATCYSD2//IMS2//GAD//AST68//AT4G35820//PYRB//AT3G12930//AT3G19480//NATA1//AT2G25830//AT2G19940//SCPL8 GO:0055082 cellular chemical homeostasis BP 0.0177708939221913 ATGLR2.1//AST68//SLAH1//AtPIF4//ATGLR3.5 GO:0042435 indole-containing compound biosynthetic ... BP 0.0179177978089333 AtPLT6//IMS2//AST68//SCPL8 GO:0051640 organelle localization BP 0.0218272655462855 AT5G55220//ATXIH//ATSCO1//AT1G62780 GO:0006839 mitochondrial transport BP 0.022372149955125 AT5G15750//AT3G53940//HSP60//AT1G18850//AT2G17670 GO:0006874 cellular calcium ion homeostasis BP 0.0246997091389397 ATGLR2.1//ATGLR3.5 GO:0042430 indole-containing compound metabolic pro... BP 0.0250762561945637 AtPLT6//IMS2//AST68//SCPL8 GO:0055085 transmembrane transport BP 0.0273628652070078 DELTA-TIP2//AtPLT6//ATSUC6//GAD//AST68//AT3G53940//AtTic20-IV//SLAH1//AtG3Pp5//ATINT3//ATCHX7 GO:0007623 circadian rhythm BP 0.0273959107941385 AtTCP11//ARR5//AtPIF4//ELF4 GO:0048511 rhythmic process BP 0.0273959107941385 AtTCP11//ARR5//AtPIF4//ELF4 GO:0006563 L-serine metabolic process BP 0.0277131502462825 ATCYSD2//AT3G19480 GO:0046112 nucleobase biosynthetic process BP 0.0277131502462825 PYRB//PUR2 GO:0019748 secondary metabolic process BP 0.0291967541504999 AT5G37170//IMS2//AST68//ATGSTF13//PPX-1//AtTic20-IV//AOP//AGP12//ATGSTU12//SCPL8 GO:0009902 chloroplast relocation BP 0.032000552275893 AT5G55220//ATSCO1//AT1G62780 GO:0051656 establishment of organelle localization BP 0.032000552275893 AT5G55220//ATSCO1//AT1G62780 GO:0051667 establishment of plastid localization BP 0.032000552275893 AT5G55220//ATSCO1//AT1G62780 GO:0006626 protein targeting to mitochondrion BP 0.0324090302519352 AT5G15750//HSP60//AT1G18850//AT2G17670 GO:0070585 protein localization to mitochondrion BP 0.0324090302519352 AT5G15750//HSP60//AT1G18850//AT2G17670 GO:0072655 establishment of protein localization to... BP 0.0324090302519352 AT5G15750//HSP60//AT1G18850//AT2G17670 GO:0019750 chloroplast localization BP 0.0338558606024384 AT5G55220//ATSCO1//AT1G62780 GO:0051644 plastid localization BP 0.0338558606024384 AT5G55220//ATSCO1//AT1G62780 GO:0009112 nucleobase metabolic process BP 0.0341533011325432 PYRB//PUR2 GO:0055074 calcium ion homeostasis BP 0.0341533011325432 ATGLR2.1//ATGLR3.5 GO:0051234 establishment of localization BP 0.0358590702248369 DELTA-TIP2//AtTCP11//AtPLT6//AT1G31780//AT5G15750//ATGLR2.1//AT5G55220//ATSUC6//AT5G24170//ATTIP49A//GAD//AST68//AT5G06570//ATNAS1//AT3G60320//AT3G53940//ARR5//AtTic20-IV//ATNUDX25//ATNUP160//HSP60//AT3G12930//AT3G07450//AT1G18850//ATSCO1//AT1G62780//AtGDU4//AT2G17670//SLAH1//AtPIF4//AtG3Pp5//ATINT3//AT2G42360//ATCHX7//ATGLR3.5//AT2G30840//AT2G30430 GO:0010017 red or far-red light signaling pathway BP 0.0375701905534651 AtPIF4//ELF4 GO:0071489 cellular response to red or far red ligh... BP 0.0375701905534651 AtPIF4//ELF4 GO:0009070 serine family amino acid biosynthetic pr... BP 0.0417749378573706 ATCYSD2//IMS2//AST68//AT3G19480//SCPL8 GO:0010114 response to red light BP 0.0418220639923993 ARR5//AtPIF4//ELF4 GO:0042446 hormone biosynthetic process BP 0.0426934079937522 AtPLT6//IMS2//AST68//AtPIF4//AT2G30840//SCPL8 GO:1901605 alpha-amino acid metabolic process BP 0.043369721435504 AtPLT6//ATCYSD2//IMS2//GAD//AST68//AT4G35820//AT3G19480//NATA1//AT2G19940//SCPL8 GO:0008643 carbohydrate transport BP 0.044773921244337 ATSUC6//AtG3Pp5 GO:0051179 localization BP 0.0466811812380545 DELTA-TIP2//AtTCP11//AtPLT6//AT1G31780//AT5G15750//ATGLR2.1//AT5G55220//ATSUC6//AT5G24170//ATTIP49A//GAD//AST68//AT5G06570//ATNAS1//AT3G60320//AT3G53940//ARR5//ATXIH//AtTic20-IV//ATNUDX25//ATNUP160//HSP60//AT3G12930//AT3G07450//AT1G18850//ATSCO1//AT1G62780//AtGDU4//AT2G17670//SLAH1//AtPIF4//AtG3Pp5//ATINT3//AT2G42360//ATCHX7//ATGLR3.5//AT2G30840//AT2G30430 GO:0042752 regulation of circadian rhythm BP 0.0485516319320688 AtTCP11//ELF4 GO:0048444 floral organ morphogenesis BP 0.0495087691411475 CYP78A7//AT3G61410//AT3G57600//AT3G12170//ATNUP160 GO:0048563 post-embryonic organ morphogenesis BP 0.0495087691411475 CYP78A7//AT3G61410//AT3G57600//AT3G12170//ATNUP160 GO:0048645 organ formation BP 0.0495087691411475 AT3G61410//AT3G57600//JLO//AT3G12170//ATNUP160 GO:0030003 cellular cation homeostasis BP 0.0521912812022461 ATGLR2.1//AST68//AtPIF4//ATGLR3.5 GO:0010092 specification of organ identity BP 0.0524406691596607 AT3G61410//AT3G57600 GO:0010093 specification of floral organ identity BP 0.0524406691596607 AT3G61410//AT3G57600 GO:0007005 mitochondrion organization BP 0.0557087080854441 AT5G15750//HSP60//AT1G18850//AT2G17670 GO:0044070 regulation of anion transport BP 0.0564367392741385 GAD//AtGDU4 GO:0072503 cellular divalent inorganic cation homeo... BP 0.0605356532445318 ATGLR2.1//ATGLR3.5 GO:0016226 iron-sulfur cluster assembly BP 0.0628285795084921 AT3G12930//ATSCO1//AT2G25830 GO:0031163 metallo-sulfur cluster assembly BP 0.0628285795084921 AT3G12930//ATSCO1//AT2G25830 GO:0048449 floral organ formation BP 0.063118011018001 AT3G61410//AT3G57600//AT3G12170//ATNUP160 GO:0042445 hormone metabolic process BP 0.064290834393277 AtPLT6//IMS2//AST68//AtPIF4//AT2G30840//SCPL8 GO:0006810 transport BP 0.0646212593547222 DELTA-TIP2//AtTCP11//AtPLT6//AT1G31780//AT5G15750//ATGLR2.1//AT5G55220//ATSUC6//AT5G24170//ATTIP49A//GAD//AST68//AT5G06570//ATNAS1//AT3G60320//AT3G53940//ARR5//AtTic20-IV//ATNUDX25//ATNUP160//HSP60//AT3G12930//AT3G07450//AT1G18850//AtGDU4//AT2G17670//SLAH1//AtPIF4//AtG3Pp5//ATINT3//AT2G42360//ATCHX7//ATGLR3.5//AT2G30840//AT2G30430 GO:0006766 vitamin metabolic process BP 0.0680495495392239 ATPTS//AT2G25830//SCPL8 GO:0044765 single-organism transport BP 0.0685975571409505 DELTA-TIP2//AtTCP11//AtPLT6//AT1G31780//AT5G15750//ATSUC6//ATTIP49A//GAD//AST68//AT5G06570//ATNAS1//AT3G60320//AT3G53940//ARR5//AtTic20-IV//ATNUDX25//ATNUP160//HSP60//AT3G12930//AT3G07450//AT1G18850//AtGDU4//AT2G17670//SLAH1//AtPIF4//AtG3Pp5//ATINT3//AT2G42360//ATCHX7//AT2G30840//AT2G30430 GO:0048646 anatomical structure formation involved ... BP 0.0698271763473474 AT3G61410//AT3G57600//JLO//AT3G12170//ATNUP160//AT1G02813 GO:1902578 single-organism localization BP 0.0729806546187362 DELTA-TIP2//AtTCP11//AtPLT6//AT1G31780//AT5G15750//ATSUC6//ATTIP49A//GAD//AST68//AT5G06570//ATNAS1//AT3G60320//AT3G53940//ARR5//AtTic20-IV//ATNUDX25//ATNUP160//HSP60//AT3G12930//AT3G07450//AT1G18850//AtGDU4//AT2G17670//SLAH1//AtPIF4//AtG3Pp5//ATINT3//AT2G42360//ATCHX7//AT2G30840//AT2G30430 GO:0098771 inorganic ion homeostasis BP 0.0734615935695326 ATGLR2.1//AtG3Pp5//ATGLR3.5 GO:0071702 organic substance transport BP 0.0743344463121309 AtTCP11//AtPLT6//AT5G15750//AT5G55220//ATSUC6//ATTIP49A//AT5G06570//ARR5//AtTic20-IV//ATNUDX25//ATNUP160//HSP60//AT3G12930//AT3G07450//AT1G18850//AtGDU4//AT2G17670//AtPIF4//AtG3Pp5//AT2G42360//AT2G30430 GO:0009407 toxin catabolic process BP 0.0772640793805386 ATGSTF13//PPX-1//AtTic20-IV//ATGSTU12 GO:0090487 secondary metabolite catabolic process BP 0.0772640793805386 ATGSTF13//PPX-1//AtTic20-IV//ATGSTU12 GO:0072507 divalent inorganic cation homeostasis BP 0.0778795082292448 ATGLR2.1//ATGLR3.5 GO:0043269 regulation of ion transport BP 0.0790596139732519 GAD//AT3G60320//AtGDU4 GO:1901566 organonitrogen compound biosynthetic pro... BP 0.080480953255912 AtPLT6//ATCYSD2//ATPTS//IMS2//AST68//ATNAS1//AT3G53940//PYRB//AT3G12930//AT3G19480//AT1G31220//PUR2//AT2G25830//AT2G19940//SCPL8 GO:0009404 toxin metabolic process BP 0.0815752309306289 ATGSTF13//PPX-1//AtTic20-IV//ATGSTU12 GO:0055080 cation homeostasis BP 0.0815752309306289 ATGLR2.1//AST68//AtPIF4//ATGLR3.5 GO:0006767 water-soluble vitamin metabolic process BP 0.0824333178853529 ATPTS//AT2G25830 GO:0042364 water-soluble vitamin biosynthetic proce... BP 0.0824333178853529 ATPTS//AT2G25830 GO:0008652 cellular amino acid biosynthetic process BP 0.0842264218254609 ATCYSD2//IMS2//AST68//AT3G12930//AT3G19480//AT2G25830//AT2G19940//SCPL8 GO:0035304 regulation of protein dephosphorylation BP 0.0848382997657786 AtTCP11//ATSCO1//AtPIF4 GO:0009064 glutamine family amino acid metabolic pr... BP 0.0870669153760139 GAD//AT2G19940 GO:0071214 cellular response to abiotic stimulus BP 0.0877936810602187 RPL10//AtPIF4//ELF4 GO:0009069 serine family amino acid metabolic proce... BP 0.0902126597921905 ATCYSD2//IMS2//AST68//AT3G19480//SCPL8 GO:0035303 regulation of dephosphorylation BP 0.0907921544926701 AtTCP11//ATSCO1//AtPIF4 GO:0009733 response to auxin BP 0.0946438304706618 PROPEP2//AtMYB74//ATNUP160//SAUR28//AT2G21220//AtPIF4 GO:0048440 carpel development BP 0.0979661621007577 CYP78A7//AT3G61410//AT3G57600//ATSCO1//AT2G19940 GO:0019344 cysteine biosynthetic process BP 0.104847304216337 ATCYSD2//IMS2//AST68//SCPL8 GO:0051641 cellular localization BP 0.10675716430152 AtTCP11//AT1G31780//AT5G15750//AT5G55220//ATTIP49A//AT3G53940//ARR5//ATXIH//AtTic20-IV//ATNUP160//HSP60//AT3G12930//AT1G18850//ATSCO1//AT1G62780//AT2G17670//AtPIF4 GO:0072521 purine-containing compound metabolic pro... BP 0.107325989931531 PYRB//AtTRM82//AT1G31220//PUR2 GO:0048467 gynoecium development BP 0.108117016364256 CYP78A7//AT3G61410//AT3G57600//ATSCO1//AT2G19940 GO:0006534 cysteine metabolic process BP 0.109831147906558 ATCYSD2//IMS2//AST68//SCPL8 GO:0006164 purine nucleotide biosynthetic process BP 0.1129272889894 PYRB//AT1G31220//PUR2 GO:0009110 vitamin biosynthetic process BP 0.116353270071709 ATPTS//AT2G25830 GO:0019725 cellular homeostasis BP 0.116595016201916 ATGLR2.1//AST68//SLAH1//AtPIF4//ATGLR3.5 GO:0003002 regionalization BP 0.117502573533738 AT3G61410//AT3G57600//CTF7//JLO GO:0009072 aromatic amino acid family metabolic pro... BP 0.117502573533738 AtPLT6//AT3G12930//AT2G25830//SCPL8 GO:0071705 nitrogen compound transport BP 0.120810531012042 DELTA-TIP2//AtPLT6//GAD//AT5G06570//ATNUDX25//ATNUP160//AtGDU4//AtG3Pp5//AT2G42360//AT2G30430 GO:0051649 establishment of localization in cell BP 0.121156211497626 AtTCP11//AT1G31780//AT5G15750//AT5G55220//ATTIP49A//AT3G53940//ARR5//AtTic20-IV//ATNUP160//HSP60//AT3G12930//AT1G18850//ATSCO1//AT1G62780//AT2G17670//AtPIF4 GO:0042398 cellular modified amino acid biosyntheti... BP 0.121451773622956 ATPTS//AGP12 GO:0009886 post-embryonic morphogenesis BP 0.121463894782504 AT5G55220//CYP78A7//AT3G61410//AT3G57600//AT3G12170//ATNUP160//AT3G12930 GO:0042592 homeostatic process BP 0.121680180951238 ATGLR2.1//AST68//SLAH1//AtPIF4//AtG3Pp5//ATGLR3.5 GO:0051049 regulation of transport BP 0.122986752748657 GAD//AT3G60320//AtGDU4 GO:0009658 chloroplast organization BP 0.125401670270488 AT5G55220//AtDJ1C//ATSCO1//AT1G62780 GO:0006605 protein targeting BP 0.130282475958314 AtTCP11//AT5G15750//ATTIP49A//ARR5//AtTic20-IV//ATNUP160//HSP60//AT3G12930//AT1G18850//AT2G17670//AtPIF4