GOID TERM ONTOLOGY pValue Genes GO:0016114 terpenoid biosynthetic process BP 0.00941962145479414 AtCLA1//AAO2//DXR//LUT2//GUN4//AT3G54510//ATCESA8//ATCYP38//PIF1//AT2G27680 GO:0006721 terpenoid metabolic process BP 0.0115545305298349 AtCLA1//AAO2//DXR//LUT2//GUN4//AT3G54510//ATCESA8//ATCYP38//PIF1//AT2G27680 GO:0009106 lipoate metabolic process BP 0.0116404983863016 AtCLA1//AT5G08415//DXR//AT2G27680 GO:0033014 tetrapyrrole biosynthetic process BP 0.0170311047474585 HO2//AtCLA1//DXR//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0009834 plant-type secondary cell wall biogenesi... BP 0.0191361457352094 CESA4//ATCESA8//GUX1 GO:0010016 shoot system morphogenesis BP 0.019393770760309 AtCLA1//AT1G32160//ATCOL4//ICU2//LUT2//AT5G48360//ARF8//DOT3//GUN4//AT4G29360//AT4G11100//ATCYP38//ICE2//ACC1 GO:0016556 mRNA modification BP 0.019486180314641 ATPAL3//AT5G66520//ATHDA14//AT4G19530//AT4G11100//ICE2//AT1G52510 GO:0007020 microtubule nucleation BP 0.0231220463206704 MCA1//ARC1//AT1G74800//ATMAP65-6//AT1G05150 GO:0015995 chlorophyll biosynthetic process BP 0.0256265988932495 AtCLA1//DXR//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0006544 glycine metabolic process BP 0.0258188678241951 AtCLA1//SHM2//DXR//AT2G27680 GO:0046785 microtubule polymerization BP 0.0261313568096201 MCA1//ARC1//AT1G74800//ATMAP65-6//AT1G05150 GO:0051258 protein polymerization BP 0.0267595342219243 ICU2//MCA1//ARC1//MRH1//AT1G74800//ATMAP65-6//AT1G05150//AIR9 GO:0007010 cytoskeleton organization BP 0.0286908343005963 ICU2//AT5G48360//MCA1//AT4G29360//ARC1//MRH1//AT1G74800//ATMAP70-4//ACC1//ATMAP65-6//AT1G05150//AIR9 GO:0031109 microtubule polymerization or depolymeri... BP 0.0293805468371213 MCA1//ARC1//AT1G74800//ATMAP65-6//AT1G05150 GO:0051049 regulation of transport BP 0.0308910410628566 AtCLA1//AT1G32160//AT4G19530//HCF173//AT1G19970//PGR5 GO:0006305 DNA alkylation BP 0.0316651261961952 ICU2//ATDDM1//AT5G48360//POLA3//AT4G29360//MCM4//ATRPA2 GO:0006306 DNA methylation BP 0.0316651261961952 ICU2//ATDDM1//AT5G48360//POLA3//AT4G29360//MCM4//ATRPA2 GO:0010155 regulation of proton transport BP 0.0328745546751237 AtCLA1//AT1G32160//AT4G19530//HCF173//PGR5 GO:0006304 DNA modification BP 0.0329781886752278 ICU2//ATDDM1//AT5G48360//POLA3//AT4G29360//MCM4//ATRPA2 GO:0044728 DNA methylation or demethylation BP 0.0329781886752278 ICU2//ATDDM1//AT5G48360//POLA3//AT4G29360//MCM4//ATRPA2 GO:0006073 cellular glucan metabolic process BP 0.033043266446474 DXR//CESA4//ATHDA14//ATCESA8//AT3G28760//XTH16//GUX1//AT3G01810//AT1G76450//AT1G68600//ATXTH27//AK-HSDH//BAM6 GO:0044042 glucan metabolic process BP 0.033043266446474 DXR//CESA4//ATHDA14//ATCESA8//AT3G28760//XTH16//GUX1//AT3G01810//AT1G76450//AT1G68600//ATXTH27//AK-HSDH//BAM6 GO:0009695 jasmonic acid biosynthetic process BP 0.0344322256846157 AtCLA1//DXR//ACX5//AT2G27680 GO:0009965 leaf morphogenesis BP 0.0346590939150862 AtCLA1//AT1G32160//ATCOL4//ICU2//AT5G48360//DOT3//GUN4//AT4G29360 GO:0006778 porphyrin-containing compound metabolic ... BP 0.0351329830175554 HO2//AtCLA1//DXR//AIRP2//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0033013 tetrapyrrole metabolic process BP 0.0362748486300951 HO2//AtCLA1//DXR//AIRP2//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0008299 isoprenoid biosynthetic process BP 0.0378285084139815 HO2//AtCLA1//CYP97B3//AAO2//DXR//LUT2//GUN4//AT3G54510//ATHDA14//ATCESA8//AT1G13650//ATCYP38//PIF1//AT2G27680 GO:0042168 heme metabolic process BP 0.0382654044569355 HO2//PIF1 GO:0043455 regulation of secondary metabolic proces... BP 0.0382654044569355 ATCESA8//ABCG29 GO:0072507 divalent inorganic cation homeostasis BP 0.0382654044569355 ZIF1//ATGLR3.2 GO:0006779 porphyrin-containing compound biosynthet... BP 0.0416229265742305 AtCLA1//DXR//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0006720 isoprenoid metabolic process BP 0.0422954994364065 HO2//AtCLA1//CYP97B3//AAO2//DXR//LUT2//GUN4//AT3G54510//ATHDA14//ATCESA8//AT1G13650//ATCYP38//PIF1//AT2G27680 GO:0009765 photosynthesis, light harvesting BP 0.0433168999178055 LUT2//LIL3:2//FTSH2 GO:1901565 organonitrogen compound catabolic proces... BP 0.0440122898156982 HO2//AtCLA1//ATPAL3//DXR//AIRP2//AT4G20930//AT1G33700//AT2G27680 GO:0010208 pollen wall assembly BP 0.0444541780292109 AGL104//CCRL6 GO:0010584 pollen exine formation BP 0.0444541780292109 AGL104//CCRL6 GO:0010927 cellular component assembly involved in ... BP 0.0444541780292109 AGL104//CCRL6 GO:0085029 extracellular matrix assembly BP 0.0444541780292109 AGL104//CCRL6 GO:0019752 carboxylic acid metabolic process BP 0.0446117176744586 HO2//AtCLA1//CYP97B3//ATPAL3//AT5G08415//AAO2//SHM2//DXR//CER3//LIL3:2//GUN4//AT3G54510//ATIPS1//MCA1//AFT//ATHDA14//AT4G20930//ATCESA8//ATSR//AT1G13650//ATKRS-2//ATCYP38//ATSDC1//AOAT1//ACC1//AK-HSDH//AT1G70280//AT1G05150//PIF1//ACX5//AT2G27680 GO:1902589 single-organism organelle organization BP 0.0450537004841249 ICU2//ATDDM1//KAC2//AT5G48360//POLA3//MCA1//ATHDA14//AT4G29360//ARC1//MRH1//AT3G02640//ATCYP38//AT1G76450//AT1G74800//ATMAP65-6//MCM4//AT1G05150//ATRPA2//AT2G27680//FTSH2//AIR9 GO:0006098 pentose-phosphate shunt BP 0.0454721471763902 DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0051156 glucose 6-phosphate metabolic process BP 0.0454721471763902 DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0006633 fatty acid biosynthetic process BP 0.0464510302322854 AtCLA1//AT5G08415//DXR//ATCYP38//ACC1//ACX5//AT2G27680 GO:0006739 NADP metabolic process BP 0.0469635678599269 DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0044255 cellular lipid metabolic process BP 0.0493930236879661 HO2//AtCLA1//CYP97B3//AT5G08415//AAO2//DXR//CER3//LUT2//LIL3:2//GUN4//AT3G54510//ATIPS1//MCA1//ATHDA14//ATCESA8//AT1G13650//ATCYP38//AT1G33700//AOAT1//ACC1//PIF1//ACX5//AT2G27680 GO:0016109 tetraterpenoid biosynthetic process BP 0.0498020046029636 AtCLA1//DXR//LUT2//GUN4//ATCYP38//AT2G27680 GO:0016117 carotenoid biosynthetic process BP 0.0498020046029636 AtCLA1//DXR//LUT2//GUN4//ATCYP38//AT2G27680 GO:0051188 cofactor biosynthetic process BP 0.0505491264901467 HO2//AtCLA1//AT5G08415//DXR//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0019216 regulation of lipid metabolic process BP 0.0509541656937363 AtCLA1//DXR//ATCESA8 GO:0046685 response to arsenic-containing substance BP 0.0509837489929537 AT3G10350//ATBXL2 GO:0019362 pyridine nucleotide metabolic process BP 0.0516290531025625 DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0046496 nicotinamide nucleotide metabolic proces... BP 0.0516290531025625 DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0009735 response to cytokinin BP 0.053075638599791 AT5G53900//ARR9//AT1G34010//ACC1 GO:0015994 chlorophyll metabolic process BP 0.0532485194906871 AtCLA1//DXR//AIRP2//GUN4//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0016108 tetraterpenoid metabolic process BP 0.0538646477694607 AtCLA1//DXR//LUT2//GUN4//ATCYP38//AT2G27680 GO:0016116 carotenoid metabolic process BP 0.0538646477694607 AtCLA1//DXR//LUT2//GUN4//ATCYP38//AT2G27680 GO:0034637 cellular carbohydrate biosynthetic proce... BP 0.0545225225145614 AT5G26330//DXR//CESA4//ATIPS1//ATHDA14//ATCESA8//AT3G28760//GUX1//AT1G76450//AT1G68600//AK-HSDH//AT2G35840//AT1G09440//BAM6 GO:0006733 oxidoreduction coenzyme metabolic proces... BP 0.0550062913601321 AtCLA1//DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0043269 regulation of ion transport BP 0.0566155081935548 AtCLA1//AT1G32160//AT4G19530//HCF173//PGR5 GO:0006413 translational initiation BP 0.0578320934836948 AT4G11175//HCF173 GO:0006563 L-serine metabolic process BP 0.0578320934836948 SHM2//ATSR GO:0009688 abscisic acid biosynthetic process BP 0.0578320934836948 AAO2//ATCESA8 GO:0030198 extracellular matrix organization BP 0.0578320934836948 AGL104//CCRL6 GO:0042548 regulation of photosynthesis, light reac... BP 0.0578320934836948 ATCYP38//FTSH2 GO:0043062 extracellular structure organization BP 0.0578320934836948 AGL104//CCRL6 GO:0043289 apocarotenoid biosynthetic process BP 0.0578320934836948 AAO2//ATCESA8 GO:1902645 tertiary alcohol biosynthetic process BP 0.0578320934836948 AAO2//ATCESA8 GO:0072524 pyridine-containing compound metabolic p... BP 0.0583019099106139 DXR//GUN4//ATHDA14//AT4G20930//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0046777 protein autophosphorylation BP 0.0591596360389166 AtCLA1//AT1G32160//AT4G19530//AT4G02630//HCF173 GO:0009117 nucleotide metabolic process BP 0.0598945050838613 AtCLA1//DXR//AHA11//GUN4//ATHDA14//AT4G20930//AT1G13730//ATCYP38//AT1G76450//MCM4//AT2G27680//FTSH2 GO:0006753 nucleoside phosphate metabolic process BP 0.0612188013004586 AtCLA1//DXR//AHA11//GUN4//ATHDA14//AT4G20930//AT1G13730//ATCYP38//AT1G76450//MCM4//AT2G27680//FTSH2 GO:1901606 alpha-amino acid catabolic process BP 0.0617682782730635 AtCLA1//ATPAL3//DXR//AT4G20930//AT2G27680 GO:0009740 gibberellic acid mediated signaling path... BP 0.0635400385354761 ARR9//AT3G54510//PIF1 GO:0010476 gibberellin mediated signaling pathway BP 0.0635400385354761 ARR9//AT3G54510//PIF1 GO:0016106 sesquiterpenoid biosynthetic process BP 0.0649781000791939 AAO2//ATCESA8 GO:0042440 pigment metabolic process BP 0.0667988957785939 HO2//AtCLA1//DXR//LUT2//AIRP2//GUN4//AT3G28220//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0006818 hydrogen transport BP 0.0671786174056632 AtCLA1//AT1G32160//AT4G19530//HCF173//PGR5 GO:0009063 cellular amino acid catabolic process BP 0.0671786174056632 AtCLA1//ATPAL3//DXR//AT4G20930//AT2G27680 GO:0015992 proton transport BP 0.0671786174056632 AtCLA1//AT1G32160//AT4G19530//HCF173//PGR5 GO:0051567 histone H3-K9 methylation BP 0.0672317087892712 ICU2//ATDDM1//POLA3//AT4G29360//MCM4//ATRPA2 GO:0061647 histone H3-K9 modification BP 0.0672317087892712 ICU2//ATDDM1//POLA3//AT4G29360//MCM4//ATRPA2 GO:0044262 cellular carbohydrate metabolic process BP 0.0686214454962702 AT5G26330//DXR//CESA4//ATIPS1//ATHDA14//ATCESA8//AT3G28760//XTH16//GUX1//AT3G01810//AT1G76450//AT1G68600//ATXTH27//AK-HSDH//AT2G35840//AT1G09440//BAM6 GO:0006636 unsaturated fatty acid biosynthetic proc... BP 0.0691580012352185 AtCLA1//DXR//ATCYP38//AT2G27680 GO:0009694 jasmonic acid metabolic process BP 0.0691580012352185 AtCLA1//DXR//ACX5//AT2G27680 GO:0033559 unsaturated fatty acid metabolic process BP 0.0691580012352185 AtCLA1//DXR//ATCYP38//AT2G27680 GO:0032879 regulation of localization BP 0.0696320035909647 AtCLA1//AT1G32160//AT4G19530//HCF173//AT1G19970//PGR5 GO:0044264 cellular polysaccharide metabolic proces... BP 0.0700327496444658 AT5G26330//DXR//CESA4//ATHDA14//ATCESA8//AT3G28760//XTH16//GUX1//AT3G01810//AT1G76450//AT1G68600//ATXTH27//AK-HSDH//AT1G09440//BAM6 GO:0009685 gibberellin metabolic process BP 0.0724015374470476 AT3G54510//PIF1 GO:0009686 gibberellin biosynthetic process BP 0.0724015374470476 AT3G54510//PIF1 GO:0016101 diterpenoid metabolic process BP 0.0724015374470476 AT3G54510//PIF1 GO:0016102 diterpenoid biosynthetic process BP 0.0724015374470476 AT3G54510//PIF1 GO:0043467 regulation of generation of precursor me... BP 0.0724015374470476 ATCYP38//FTSH2 GO:0071370 cellular response to gibberellin stimulu... BP 0.0726517161809134 ARR9//AT3G54510//PIF1 GO:0072330 monocarboxylic acid biosynthetic process BP 0.0727830907793483 AtCLA1//AT5G08415//AAO2//DXR//ATCESA8//ATCYP38//AOAT1//ACC1//ACX5//AT2G27680 GO:1901605 alpha-amino acid metabolic process BP 0.0729816814001608 AtCLA1//ATPAL3//SHM2//DXR//GUN4//ATIPS1//MCA1//AT4G20930//ATSR//AOAT1//AK-HSDH//AT1G70280//AT1G05150//AT2G27680 GO:0009451 RNA modification BP 0.0758599798701215 ATPAL3//AT5G66520//ATHDA14//AT4G19530//AT4G11100//ICE2//AT1G52510 GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 0.0770832852016339 HO2//AtCLA1//CYP97B3//DXR//GUN4//ATHDA14//AT4G20930//AT1G13650//ATCYP38//AT1G76450//AT2G27680//FTSH2 GO:0046148 pigment biosynthetic process BP 0.0772369649494737 AtCLA1//DXR//LUT2//GUN4//AT3G28220//ATCYP38//AT1G76450//PIF1//AT2G27680 GO:0031408 oxylipin biosynthetic process BP 0.0800830230488049 AtCLA1//DXR GO:0055086 nucleobase-containing small molecule met... BP 0.0802268018161605 AtCLA1//DXR//AHA11//GUN4//ATHDA14//AT4G20930//AT1G13730//ATCYP38//AT1G76450//MCM4//AT2G27680//FTSH2