GOID TERM ONTOLOGY pValue Genes GO:0046271 phenylpropanoid catabolic process BP 0.00182540109887752 LAC13//LAC11//ATPAL1 GO:0046274 lignin catabolic process BP 0.00182540109887752 LAC13//LAC11//ATPAL1 GO:0009808 lignin metabolic process BP 0.00568893390141661 LAC13//LAC11//ATPAL1//AT2G41480 GO:0009698 phenylpropanoid metabolic process BP 0.0173701850297605 LAC13//LAC11//4CL.1//4CL5//ATPAL1//AT2G41480 GO:0045736 negative regulation of cyclin-dependent ... BP 0.0193797269916295 ATCDK8//CAK1AT GO:0055072 iron ion homeostasis BP 0.0193797269916295 BHLH101//EX1 GO:0042181 ketone biosynthetic process BP 0.0288520637413177 AT5G10160//DHNAT1 GO:1901661 quinone metabolic process BP 0.0288520637413177 AT5G10160//DHNAT1 GO:1901663 quinone biosynthetic process BP 0.0288520637413177 AT5G10160//DHNAT1 GO:0009805 coumarin biosynthetic process BP 0.0311412469296237 4CL.1//4CL5//ATPAL1 GO:0009804 coumarin metabolic process BP 0.0331346562802109 4CL.1//4CL5//ATPAL1 GO:0009108 coenzyme biosynthetic process BP 0.034149815403911 AT5G10160//ATR4//DHNAT1//NAPRT2 GO:0006469 negative regulation of protein kinase ac... BP 0.043735303573921 ATCDK8//CAK1AT GO:0006598 polyamine catabolic process BP 0.043735303573921 4CL.1//ATPAL1 GO:0033673 negative regulation of kinase activity BP 0.043735303573921 ATCDK8//CAK1AT GO:0045786 negative regulation of cell cycle BP 0.043735303573921 ATCDK8//CAK1AT GO:0051348 negative regulation of transferase activ... BP 0.043735303573921 ATCDK8//CAK1AT GO:0071901 negative regulation of protein serine/th... BP 0.043735303573921 ATCDK8//CAK1AT GO:1901658 glycosyl compound catabolic process BP 0.043735303573921 ATNSP2//AT4G29570 GO:0001933 negative regulation of protein phosphory... BP 0.0478173216497396 ATCDK8//CAK1AT GO:0042326 negative regulation of phosphorylation BP 0.0478173216497396 ATCDK8//CAK1AT GO:0009310 amine catabolic process BP 0.0489612042157922 CYP79A4P//ATR4//4CL.1//ATPAL1 GO:0042402 cellular biogenic amine catabolic proces... BP 0.0489612042157922 CYP79A4P//ATR4//4CL.1//ATPAL1 GO:0010563 negative regulation of phosphorus metabo... BP 0.052032182686689 ATCDK8//CAK1AT GO:0031400 negative regulation of protein modificat... BP 0.052032182686689 ATCDK8//CAK1AT GO:0045936 negative regulation of phosphate metabol... BP 0.052032182686689 ATCDK8//CAK1AT GO:1901264 carbohydrate derivative transport BP 0.052032182686689 GTR2//AtG3Pp3 GO:0000079 regulation of cyclin-dependent protein s... BP 0.0608383674450113 ATCDK8//CAK1AT GO:0010440 stomatal lineage progression BP 0.0608383674450113 ATCDK8//CAK1AT GO:0019439 aromatic compound catabolic process BP 0.0608479831137618 CYP79A4P//LAC13//LAC11//ATR4//AT4G29570//ATPAL1 GO:0080167 response to karrikin BP 0.0647963818396213 GTR2//AT5G10120//ATPAL1 GO:0009451 RNA modification BP 0.0667941435524676 AT5G14460//SIG4//AT3G48200//AT3G22150 GO:1901361 organic cyclic compound catabolic proces... BP 0.0728639708179589 CYP79A4P//LAC13//LAC11//ATR4//AT4G29570//ATPAL1 GO:0000041 transition metal ion transport BP 0.0769720262899992 AT1G51840//AtPP2-A8//AT5G23830//UGT71C1//AT2G41480 GO:0006595 polyamine metabolic process BP 0.0798101722960348 4CL.1//ATPAL1 GO:0009267 cellular response to starvation BP 0.0861493408916246 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:1901136 carbohydrate derivative catabolic proces... BP 0.0898970692613593 ATNSP2//AT4G29570 GO:0042594 response to starvation BP 0.0932625731049741 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:0043549 regulation of kinase activity BP 0.095074578337 ATCDK8//CAK1AT GO:0045859 regulation of protein kinase activity BP 0.095074578337 ATCDK8//CAK1AT GO:0055076 transition metal ion homeostasis BP 0.095074578337 BHLH101//EX1 GO:0071900 regulation of protein serine/threonine k... BP 0.095074578337 ATCDK8//CAK1AT GO:0009963 positive regulation of flavonoid biosynt... BP 0.0958184735954213 4CL.1//4CL5//ATPAL1 GO:0016556 mRNA modification BP 0.0992040343902805 SIG4//AT3G48200//AT3G22150 GO:0042398 cellular modified amino acid biosyntheti... BP 0.100335628113494 4CL.1//ATPAL1 GO:0031669 cellular response to nutrient levels BP 0.100684636857663 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:0051338 regulation of transferase activity BP 0.105675993885251 ATCDK8//CAK1AT GO:0009074 aromatic amino acid family catabolic pro... BP 0.106117750577959 CYP79A4P//ATR4//ATPAL1 GO:0042180 cellular ketone metabolic process BP 0.106117750577959 AT5G10160//AtLEC1//DHNAT1 GO:0001932 regulation of protein phosphorylation BP 0.111091567691621 ATCDK8//CAK1AT GO:0032269 negative regulation of cellular protein ... BP 0.111091567691621 ATCDK8//CAK1AT GO:0042325 regulation of phosphorylation BP 0.111091567691621 ATCDK8//CAK1AT GO:0051248 negative regulation of protein metabolic... BP 0.111091567691621 ATCDK8//CAK1AT GO:0098771 inorganic ion homeostasis BP 0.113215197355497 BHLH101//EX1//AtG3Pp3 GO:0006576 cellular biogenic amine metabolic proces... BP 0.113816566548185 CYP79A4P//ATR4//4CL.1//ATPAL1 GO:0010106 cellular response to iron ion starvation BP 0.116830394503372 BHLH101//AT1G51840//UGT71C1 GO:0031667 response to nutrient levels BP 0.118487132481783 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:0044106 cellular amine metabolic process BP 0.12519679453715 CYP79A4P//ATR4//4CL.1//ATPAL1 GO:0071478 cellular response to radiation BP 0.127750152818491 SIG4//AtLEC1 GO:0071482 cellular response to light stimulus BP 0.127750152818491 SIG4//AtLEC1 GO:0031668 cellular response to extracellular stimu... BP 0.137756782269208 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:0071496 cellular response to external stimulus BP 0.137756782269208 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:0006733 oxidoreduction coenzyme metabolic proces... BP 0.139582688579626 SIG4//AT5G10160//AT3G48200//ATR4//NAPRT2 GO:0006633 fatty acid biosynthetic process BP 0.143125754451093 AT5G38020//AT5G10160//ATR4//AtLEC1 GO:0007015 actin filament organization BP 0.143285716935398 ARP2//PLIM2b//ATFH4 GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.143285716935398 4CL.1//4CL5//ATPAL1 GO:0006544 glycine metabolic process BP 0.150784640614541 ATR4//SHM7 GO:0016036 cellular response to phosphate starvatio... BP 0.155184622288109 ATPAP22//ATPAH1//AT2G03260 GO:0072330 monocarboxylic acid biosynthetic process BP 0.155259917835204 AT5G38020//CYP79A4P//AT5G10160//AT3G57460//AT4G39830//ATR4//AT3G01830//AtLEC1//ATFH4//CYP94C1 GO:0006352 DNA-templated transcription, initiation BP 0.155948403482178 255_ GO:0055081 anion homeostasis BP 0.155948403482178 213_ GO:0072525 pyridine-containing compound biosyntheti... BP 0.155948403482178 132_ GO:0009991 response to extracellular stimulus BP 0.158403309730246 BHLH101//AT1G51840//ATPAP22//ATPAH1//UGT71C1//AT2G03260 GO:0009694 jasmonic acid metabolic process BP 0.163284322666912 ATR4//AT4G28085//CYP94C1 GO:0030029 actin filament-based process BP 0.165235741703282 ARP2//PLIM2b//AT1G23350//ATFH4 GO:0016310 phosphorylation BP 0.168453407884312 PRK6//ATSAL2//ATCDK8//CIPK19//AT5G41680//CAK1AT//CRK21//ATKEA3//IKU2//AT3G01830//BBX14//AtPERK7//AT2G17170//ATNHL10//AT1G24650//AT2G28990//AT2G19230 GO:0046834 lipid phosphorylation BP 0.170146381599148 314_ GO:0046854 phosphatidylinositol phosphorylation BP 0.170146381599148 314_ GO:0046890 regulation of lipid biosynthetic process BP 0.170146381599148 854_ GO:0009699 phenylpropanoid biosynthetic process BP 0.171508477982419 4CL.1//4CL5//ATPAL1 GO:0010167 response to nitrate BP 0.178391320861637 AT1G51840//AT3G62040//AT4G30060//UGT71C1 GO:0009696 salicylic acid metabolic process BP 0.182942787329211 AT3G57460//AT4G39830//AT3G01830//ATPAL1//ATFH4 GO:0009960 endosperm development BP 0.18410703774824 043_ GO:0015706 nitrate transport BP 0.188484319594516 AT1G51840//AT3G62040//AT4G30060//UGT71C1 GO:0030036 actin cytoskeleton organization BP 0.192562055761507 ARP2//PLIM2b//ATFH4 GO:0052542 defense response by callose deposition BP 0.19276181683787 ATR4//4CL5 GO:0050801 ion homeostasis BP 0.195313760943094 BHLH101//EX1//ACR11//AtG3Pp3 GO:0042343 indole glucosinolate metabolic process BP 0.197834313644624 534_ GO:0044273 sulfur compound catabolic process BP 0.197834313644624 161_ GO:0052482 defense response by cell wall thickening BP 0.197834313644624 534_ GO:0052544 defense response by callose deposition i... BP 0.197834313644624 534_ GO:0006732 coenzyme metabolic process BP 0.198166182779466 SIG4//AT5G10160//AT3G48200//ATR4//DHNAT1//NAPRT2 GO:0018958 phenol-containing compound metabolic pro... BP 0.203326402649669 AT3G57460//AT4G39830//AT3G01830//ATPAL1//ATFH4 GO:0046488 phosphatidylinositol metabolic process BP 0.205029868553212 PIP5K3//ATSAL2 GO:0009664 plant-type cell wall organization BP 0.209288054898032 CIPK19//AT5G06630//AT4G33390//AT4G08410//AT2G41480 GO:0015698 inorganic anion transport BP 0.209288054898032 AT1G51840//AT3G62040//AT4G30060//UGT71C1//AT2G03260 GO:0009891 positive regulation of biosynthetic proc... BP 0.210658570491216 AT5G10120//ATBZIP61//4CL.1//4CL5//BBX14//AtLEC1//ATPAL1 GO:0000162 tryptophan biosynthetic process BP 0.211332085953053 534_ GO:0046219 indolalkylamine biosynthetic process BP 0.211332085953053 534_ GO:0006575 cellular modified amino acid metabolic p... BP 0.223582363854832 4CL.1//ATPAL1