GOID TERM ONTOLOGY pValue Genes GO:0010928 regulation of auxin mediated signaling p... BP 0.00167834315961453 ABCB21//LCR//AtPIF4 GO:0006354 DNA-templated transcription, elongation BP 0.00361147896943261 RPS12//PSBF//CLPP1//PSBC//RPS4//YCF10//NRPD1 GO:0000272 polysaccharide catabolic process BP 0.00570484334082873 AT5G01590//ATSS4//GWD//FEI2 GO:0009631 cold acclimation BP 0.0062532861067906 ATRBP31//AtSFR6//GWD GO:0052545 callose localization BP 0.0087088741094065 ATSUS6//AT5G52050//AT4G24160//ATSEC1B//AtPP2-B6 GO:0033037 polysaccharide localization BP 0.00937361200033483 ATSUS6//AT5G52050//AT4G24160//ATSEC1B//AtPP2-B6 GO:0009966 regulation of signal transduction BP 0.0114710010304163 ATPK10//ABCB21//AtSFR6//ATCLV1//LCR//AtPIF4 GO:0023051 regulation of signaling BP 0.0114710010304163 ATPK10//ABCB21//AtSFR6//ATCLV1//LCR//AtPIF4 GO:0015804 neutral amino acid transport BP 0.0115313812931721 AT3G47380//AAP1//AT1G07030//AT1G51620 GO:0052542 defense response by callose deposition BP 0.0115313812931721 AT5G52050//AT4G24160//ATSEC1B//AtPP2-B6 GO:0010646 regulation of cell communication BP 0.0128055486030864 ATPK10//ABCB21//AtSFR6//ATCLV1//LCR//AtPIF4 GO:0006623 protein targeting to vacuole BP 0.0169848163131347 ATATG6//AMSH1//AT1G16210//AT2G25910//BP80-3;2 GO:0072665 protein localization to vacuole BP 0.0169848163131347 ATATG6//AMSH1//AT1G16210//AT2G25910//BP80-3;2 GO:0072666 establishment of protein localization to... BP 0.0169848163131347 ATATG6//AMSH1//AT1G16210//AT2G25910//BP80-3;2 GO:0009963 positive regulation of flavonoid biosynt... BP 0.020228504244681 AT5G20700//AT5G40450//ATCPK32//AT3G27210//AT2G36290 GO:0009247 glycolipid biosynthetic process BP 0.0213937043979929 ATSUS6//AT3G57170//ATSS4//AtLEA5//PDLZ2 GO:0007623 circadian rhythm BP 0.0221291016231871 AT5G14550//ARR9//AtSFR6//GWD//PAP3//AtPIF4 GO:0048511 rhythmic process BP 0.0221291016231871 AT5G14550//ARR9//AtSFR6//GWD//PAP3//AtPIF4 GO:0007034 vacuolar transport BP 0.0226017998787608 ATATG6//AMSH1//AT1G16210//AT2G25910//BP80-3;2 GO:0016051 carbohydrate biosynthetic process BP 0.0244309580478121 NTRC//CYP705A1//ATSUS6//IRX14//AT5G59210//AT5G48740//CaS//GATL7//AT3G46220//ATSS4//ESM1//AT3G20390//AT1G73920//GWD//GATL8//AT2G25450//FEI2//ARAD1 GO:0051704 multi-organism process BP 0.0248597090846739 ATCAX3//SAG101//APK4//KCBP//PROPEP2//AT5G46040//BGLU32//ATATG6//ATCPK32//AT3G47380//ATEXLA2//AT4G36010//ATWRKY18//LACS4//AtSFR6//AtLEA5//AAP1//ESM1//AT3G14470//SON1//AT3G03000//OBE1//NHL8//RFL1//NRPD1//Hsp70b//AT1G16210//GWD//AT2G24620//AtPIF4//TOM3//BP80-3;2 GO:0009607 response to biotic stimulus BP 0.0275265634421838 ATCAX3//SAG101//PROPEP2//AT5G46040//BGLU32//ATATG6//ATCPK32//AT3G47380//AT4G36010//ATWRKY18//LACS4//AtSFR6//AtLEA5//AAP1//ESM1//AT3G14470//SON1//AT3G03000//NHL8//RFL1//NRPD1//Hsp70b//AT1G16210//GWD//AtPIF4//BP80-3;2 GO:0043207 response to external biotic stimulus BP 0.0275265634421838 ATCAX3//SAG101//PROPEP2//AT5G46040//BGLU32//ATATG6//ATCPK32//AT3G47380//AT4G36010//ATWRKY18//LACS4//AtSFR6//AtLEA5//AAP1//ESM1//AT3G14470//SON1//AT3G03000//NHL8//RFL1//NRPD1//Hsp70b//AT1G16210//GWD//AtPIF4//BP80-3;2 GO:0051707 response to other organism BP 0.0275265634421838 ATCAX3//SAG101//PROPEP2//AT5G46040//BGLU32//ATATG6//ATCPK32//AT3G47380//AT4G36010//ATWRKY18//LACS4//AtSFR6//AtLEA5//AAP1//ESM1//AT3G14470//SON1//AT3G03000//NHL8//RFL1//NRPD1//Hsp70b//AT1G16210//GWD//AtPIF4//BP80-3;2 GO:0005982 starch metabolic process BP 0.027877591010662 NTRC//CaS//AT5G01590//ATSS4//ESM1//GWD//FEI2 GO:0002831 regulation of response to biotic stimulu... BP 0.0293005055341832 ATWRKY18//AtSFR6 GO:0016032 viral process BP 0.0293005055341832 OBE1//TOM3 GO:0055081 anion homeostasis BP 0.0293005055341832 ATCAX3//AT4G24160 GO:0006952 defense response BP 0.0294479520374515 AT5G20700//SAG101//PROPEP2//AT5G52050//AT5G40450//ATATG6//ATCPK32//AT3G47380//ATWRKY18//ATRBP31//LACS4//AT4G24160//ATSEC1B//AtSFR6//AtLEA5//AT1G51620//ESM1//AT3G27210//AT3G14470//AT3G03000//OBE1//SUMM2//AT1G63750//RFL1//NRPD1//AT1G23120//AtPIF4//AtPP2-B6//BP80-3;2 GO:0009812 flavonoid metabolic process BP 0.029980123068684 AT5G20700//AT5G40450//ATCPK32//AT3G27210//TT15//AT2G36290//PAP3 GO:0009608 response to symbiont BP 0.0300800945631436 NHL8//AT1G16210//GWD GO:0009610 response to symbiotic fungus BP 0.0300800945631436 NHL8//AT1G16210//GWD GO:1902582 single-organism intracellular transport BP 0.0302463683333954 AT5G20700//AT5G59210//RANBP1//AT5G40450//AT5G18780//AT5G01590//ATATG6//ATVLN3//ATCPK32//AT3G47380//ATRBP31//AtLEA5//SIRANBP//AT1G07030//AMSH1//delta-ADR//AT3G15290//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.032298945829902 AT5G20700//AT5G40450//ATCPK32//AT3G27210//AT2G36290 GO:0009734 auxin-activated signaling pathway BP 0.0355572353161608 ABCB21//LCR//AtPIF4 GO:0006790 sulfur compound metabolic process BP 0.0363057139186387 HINT4//ATG4//APK4//AT5G51140//ATAAH-2//CaS//ESM1//UMAMIT47//AT3G20390//AtHIR1//ATGSTU14//LIP1//AT2G25450 GO:0009407 toxin catabolic process BP 0.0366018434610647 ATGSTF13//GSTL2//AT4G24160//PDLZ2//ATGSTU16//ATGSTU14 GO:0090487 secondary metabolite catabolic process BP 0.0366018434610647 ATGSTF13//GSTL2//AT4G24160//PDLZ2//ATGSTU16//ATGSTU14 GO:0019748 secondary metabolic process BP 0.0378399563727668 ATGSTF13//GSTL2//LACS4//AT4G24160//ESM1//UMAMIT47//AT3G20390//PDLZ2//ATGSTU16//AT2G36290//ATGSTU14//LIP1//AT2G25450 GO:0006664 glycolipid metabolic process BP 0.0388485901769251 ATSUS6//AT3G57170//ATSS4//AtLEA5//PDLZ2 GO:0032101 regulation of response to external stimu... BP 0.039215845742588 ATWRKY18//AtSFR6 GO:1903509 liposaccharide metabolic process BP 0.0424059825352834 ATSUS6//AT3G57170//ATSS4//AtLEA5//PDLZ2 GO:0016192 vesicle-mediated transport BP 0.0425074584578107 AT5G59210//AT5G18780//ATVLN3//EXT-like//ATSEC1B//AMSH1//delta-ADR//AT3G15290//PDLZ2//AT1G16210//AT1G05020//AT2G25910 GO:0009404 toxin metabolic process BP 0.0440850765542078 ATGSTF13//GSTL2//AT4G24160//PDLZ2//ATGSTU16//ATGSTU14 GO:0009813 flavonoid biosynthetic process BP 0.0440850765542078 AT5G20700//AT5G40450//ATCPK32//AT3G27210//TT15//AT2G36290 GO:0006109 regulation of carbohydrate metabolic pro... BP 0.0445833761226525 NTRC//AT2G25450 GO:0071365 cellular response to auxin stimulus BP 0.0446645311357277 ABCB21//LCR//AtPIF4 GO:0044262 cellular carbohydrate metabolic process BP 0.0459187817781064 NTRC//CYP705A1//ATSUS6//IRX14//AT5G59210//AT5G48740//CaS//AT5G01590//ATVLN3//AT3G46220//ATSS4//ESM1//AT1G73920//GWD//AT2G25450//FEI2 GO:0046467 membrane lipid biosynthetic process BP 0.0461537821517905 ATSUS6//AT3G57170//ATSS4//AtLEA5//PDLZ2 GO:0015824 proline transport BP 0.0479334086783754 AT3G47380//AT1G07030//AT1G51620 GO:0010583 response to cyclopentenone BP 0.0480994106850173 GSTL2//ATEXLA2//AT4G24160//ATGSTU16//ATGSTU14 GO:0009733 response to auxin BP 0.0545912953541127 AT5G66260//PROPEP2//ABCB21//ATCPK32//AT4G38860//PDLZ2//SAUR28//LCR//AtPIF4 GO:0019374 galactolipid metabolic process BP 0.054964738430058 ATSUS6//ATSS4//AtLEA5//PDLZ2 GO:0019375 galactolipid biosynthetic process BP 0.054964738430058 ATSUS6//ATSS4//AtLEA5//PDLZ2 GO:0009767 photosynthetic electron transport chain BP 0.0603578966882651 PSBF//PSBC//CaS//PPH1 GO:0046907 intracellular transport BP 0.0623473173268267 AT5G20700//AT5G59210//RANBP1//AT5G40450//AT5G18780//AT5G01590//ATATG6//ATVLN3//ATCPK32//AT3G47380//ATRBP31//AtLEA5//SIRANBP//AT1G07030//AMSH1//delta-ADR//AT3G15290//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:0022607 cellular component assembly BP 0.0663938604864796 PSBF//PSBC//IRX14//CaS//ATATG6//ATVLN3//ATRBP31//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//GRL GO:0048583 regulation of response to stimulus BP 0.0674436881847293 AT5G20700//SAG101//AT5G40450//ATPK10//ABCB21//ATCPK32//AT3G47380//ATWRKY18//AtSFR6//AtLEA5//AT3G27210//OBE1//ATCLV1//LCR//AtPIF4 GO:0051649 establishment of localization in cell BP 0.0674602389959854 AT5G20700//ATG4//AT5G59210//RANBP1//AT5G40450//AT5G18780//AT5G01590//ATATG6//ATVLN3//ATCPK32//AT3G47380//ATRBP31//ATSEC1B//AtLEA5//SIRANBP//AT1G07030//AMSH1//delta-ADR//AT3G15290//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:0034637 cellular carbohydrate biosynthetic proce... BP 0.067944954020806 NTRC//CYP705A1//ATSUS6//IRX14//AT5G59210//AT5G48740//CaS//AT3G46220//ATSS4//ESM1//AT1G73920//GWD GO:1901135 carbohydrate derivative metabolic proces... BP 0.0688942817986432 NTRC//HINT4//ATSUS6//ATG4//CaS//ATVLN3//AT3G57170//ASE3//ATKT3//ATSS4//ATTRANS11//AtLEA5//AT-RSH1//ESM1//UMAMIT47//AT3G20390//PDLZ2//NHL8//LIP1//AT2G25450 GO:0006497 protein lipidation BP 0.0691878902944375 ATCPK32//AT3G57170//AT3G27210//AT3G05050//SUMM2//NHL8//RFL1//AT2G01790//AtPP2-B6//AT2G44420 GO:0042158 lipoprotein biosynthetic process BP 0.0691878902944375 ATCPK32//AT3G57170//AT3G27210//AT3G05050//SUMM2//NHL8//RFL1//AT2G01790//AtPP2-B6//AT2G44420 GO:0042157 lipoprotein metabolic process BP 0.0706105949646344 ATCPK32//AT3G57170//AT3G27210//AT3G05050//SUMM2//NHL8//RFL1//AT2G01790//AtPP2-B6//AT2G44420 GO:0033036 macromolecule localization BP 0.0706690491422847 ATSUS6//AT5G20700//RANBP1//AT5G52050//AT5G40450//AT5G01590//ATATG6//ACR4//ATVLN3//ATCPK32//AT3G47380//ATRBP31//AT4G24160//ATSEC1B//AtLEA5//SIRANBP//AMSH1//delta-ADR//AT3G27210//AT1G16210//AtPIF4//AtPP2-B6//AT2G25910//BP80-3;2 GO:1901137 carbohydrate derivative biosynthetic pro... BP 0.0725683858071127 ATSUS6//ATVLN3//AT3G57170//ATKT3//ATSS4//ATTRANS11//AtLEA5//ESM1//UMAMIT47//AT3G20390//PDLZ2//NHL8//AT2G25450 GO:0006605 protein targeting BP 0.074628074689048 AT5G20700//RANBP1//AT5G40450//AT5G01590//ATATG6//ATCPK32//AT3G47380//ATRBP31//AtLEA5//SIRANBP//AMSH1//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:0044264 cellular polysaccharide metabolic proces... BP 0.076280503458569 NTRC//CYP705A1//IRX14//AT5G59210//AT5G48740//CaS//AT5G01590//ATVLN3//AT3G46220//ATSS4//ESM1//GWD//FEI2 GO:1902580 single-organism cellular localization BP 0.0768160866687324 AT5G20700//RANBP1//AT5G40450//AT5G01590//ATATG6//ATCPK32//AT3G47380//ATRBP31//AtLEA5//SIRANBP//AMSH1//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:1901576 organic substance biosynthetic process BP 0.0808328235991947 RPS12//PSBF//CLPP1//PSBC//RPS4//YCF10//NTRC//AT-HSFA5//CYP705A1//ATSUS6//AT5G20700//IRX14//ATG4//SAG101//AGL101//KNAT3//AtMYB53//AT5G59210//AT5G52050//AT5G51140//AT5G48740//ATAAH-2//AZF3//AT5G40450//CaS//AT5G05090//GATL7//DHDPS//ATVLN3//ATCPK32//AT3G57170//ARR9//AT3G47380//AT3G46220//ASE3//bZIP19//ATWRKY18//ATRBP31//LACS4//ATKT3//ATSS4//ATTRANS11//AtSFR6//AtLEA5//AT2G40620//AtHEMA1//AT1G76880//ESM1//AT3G27210//AT3G23690//AT3G14470//UMAMIT47//AT3G25810//AT3G20390//AtHrd1A//PDLZ2//AT3G03590//AT3G05050//SUMM2//AT1G68070//nMAT1//AT1G73920//NHL8//SCL1//RFL1//NRPD1//TT15//GWD//TAF6B//ATPOT1//AT2G36290//PAP3//AtHIR1//GATL8//ATCB5LP//AtPIF4//HBI1//LIP1//AT2G25450//FEI2//AT2G01790//AtPP2-B6//GRL//ARAD1//AT2G44420//BP80-3;2 GO:0034622 cellular macromolecular complex assembly BP 0.0809860141272799 PSBF//PSBC//IRX14//CaS//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//GRL GO:0044272 sulfur compound biosynthetic process BP 0.0810882334691499 ATG4//AT5G51140//ATAAH-2//CaS//ESM1//UMAMIT47//AT3G20390//AtHIR1//LIP1//AT2G25450 GO:0009846 pollen germination BP 0.0816303217435376 KCBP//ATATG6 GO:0009624 response to nematode BP 0.0822844652686042 ATCAX3//AT5G46040//AAP1 GO:0044723 single-organism carbohydrate metabolic p... BP 0.0830749049444637 NTRC//CYP705A1//ATSUS6//IRX14//AT5G59210//AT5G48740//CaS//GATL7//ATVLN3//AT3G46220//ATKT3//ATSS4//ATTRANS11//ESM1//AT3G20390//AT1G73920//NHL8//TT15//GWD//GATL8//AT2G25450//FEI2//ARAD1 GO:0010090 trichome morphogenesis BP 0.0845969035219564 IRX14//KCBP//AtSFR6//GRL GO:0000271 polysaccharide biosynthetic process BP 0.0880634064779882 NTRC//CYP705A1//IRX14//AT5G59210//AT5G48740//CaS//AT3G46220//ATSS4//ESM1//GWD//FEI2//ARAD1 GO:0019252 starch biosynthetic process BP 0.0884818400719954 NTRC//CaS//ATSS4//ESM1//GWD GO:0006073 cellular glucan metabolic process BP 0.0938904762151795 NTRC//AT5G59210//CaS//AT5G01590//ATVLN3//ATSS4//ESM1//GWD//FEI2 GO:0044042 glucan metabolic process BP 0.0938904762151795 NTRC//AT5G59210//CaS//AT5G01590//ATVLN3//ATSS4//ESM1//GWD//FEI2 GO:0071248 cellular response to metal ion BP 0.0955150608861699 CaS//bZIP19 GO:0070887 cellular response to chemical stimulus BP 0.0958175372043859 NTRC//SAG101//KNAT3//PROPEP2//CaS//ATPK10//ABCB21//ACR4//ATCPK32//ARR9//AT3G47380//bZIP19//AtSFR6//AtLEA5//AT3G03000//PDLZ2//NRPD1//AT1G06620//AT2G36970//LCR//PAP3//AtPIF4//AT2G44420 GO:0006643 membrane lipid metabolic process BP 0.097010034724971 ATSUS6//AT3G57170//ATSS4//AtLEA5//PDLZ2 GO:0006461 protein complex assembly BP 0.0985999073284577 PSBF//PSBC//IRX14//CaS//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//GRL GO:0005976 polysaccharide metabolic process BP 0.0986486687273515 NTRC//CYP705A1//IRX14//AT5G59210//AT5G48740//CaS//AT5G01590//ATVLN3//AT3G46220//ATSS4//ESM1//GWD//FEI2//ARAD1 GO:0006886 intracellular protein transport BP 0.0990874389324604 AT5G20700//RANBP1//AT5G40450//AT5G01590//ATATG6//ATCPK32//AT3G47380//ATRBP31//AtLEA5//SIRANBP//AMSH1//delta-ADR//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:0070271 protein complex biogenesis BP 0.10016499106199 PSBF//PSBC//IRX14//CaS//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//GRL GO:0071822 protein complex subunit organization BP 0.101110781944585 PSBF//PSBC//IRX14//CaS//ATVLN3//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//GRL GO:0072594 establishment of protein localization to... BP 0.101406495784665 RANBP1//AT5G01590//ATATG6//ATRBP31//SIRANBP//AMSH1//AT1G16210//AT2G25910//BP80-3;2 GO:0043623 cellular protein complex assembly BP 0.101830003362535 PSBF//PSBC//IRX14//CaS//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G05020//GRL GO:0009059 macromolecule biosynthetic process BP 0.102757746655615 RPS12//PSBF//CLPP1//PSBC//RPS4//YCF10//NTRC//AT-HSFA5//CYP705A1//IRX14//ATG4//AGL101//KNAT3//AtMYB53//AT5G59210//AT5G48740//AZF3//CaS//AT5G05090//ATVLN3//ATCPK32//AT3G57170//ARR9//AT3G46220//bZIP19//ATWRKY18//ATRBP31//ATKT3//ATSS4//ATTRANS11//AtSFR6//AT2G40620//AT1G76880//ESM1//AT3G27210//AT3G23690//PDLZ2//AT3G05050//SUMM2//nMAT1//NHL8//SCL1//RFL1//NRPD1//GWD//TAF6B//ATPOT1//PAP3//AtPIF4//HBI1//LIP1//FEI2//AT2G01790//AtPP2-B6//GRL//ARAD1//AT2G44420 GO:0009073 aromatic amino acid family biosynthetic ... BP 0.104853419742898 ATG4//ATRBP31//LIP1 GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 0.104853419742898 AtHrd1A//PDLZ2//AT1G16210 GO:0015995 chlorophyll biosynthetic process BP 0.10543830433622 NTRC//ATG4//AtHEMA1//LIP1 GO:0044085 cellular component biogenesis BP 0.105807994147527 PSBF//PSBC//CYP705A1//AO1//IRX14//ATG4//AT5G48740//CaS//ATATG6//ATVLN3//AT3G46220//ATRBP31//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//FEI2//GRL GO:0033365 protein localization to organelle BP 0.107264358916675 RANBP1//AT5G01590//ATATG6//ATRBP31//SIRANBP//AMSH1//AT1G16210//AT2G25910//BP80-3;2 GO:0065003 macromolecular complex assembly BP 0.108214478448745 PSBF//PSBC//IRX14//CaS//AtSFR6//PDLZ2//ARC3//AT1G16210//ATCLV1//AT1G75600//AT1G05020//GRL GO:0010026 trichome differentiation BP 0.109120310280859 IRX14//KCBP//AtSFR6//GRL GO:0008104 protein localization BP 0.10921397113139 AT5G20700//RANBP1//AT5G40450//AT5G01590//ATATG6//ATVLN3//ATCPK32//AT3G47380//ATRBP31//ATSEC1B//AtLEA5//SIRANBP//AMSH1//delta-ADR//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2 GO:0034613 cellular protein localization BP 0.109447130080143 AT5G20700//RANBP1//AT5G40450//AT5G01590//ATATG6//ATCPK32//AT3G47380//ATRBP31//AtLEA5//SIRANBP//AMSH1//delta-ADR//AT3G27210//AT1G16210//AtPIF4//AT2G25910//BP80-3;2