GOID TERM ONTOLOGY pValue Genes GO:0015979 photosynthesis BP 7.06883156730614e-05 NDHG//YCF4//YCF10//PETA//RLM3//HEMC//ATLFNR1//ENH1//ATP5//ACO1//ATPC1//NDF4//AT2G43560//AT1G63610//CRR3 GO:0019684 photosynthesis, light reaction BP 0.000247258583300607 NDHG//YCF4//YCF10//PETA//HEMC//ATLFNR1//ENH1//ATPC1//NDF4//AT2G43560//AT1G63610//CRR3 GO:0006091 generation of precursor metabolites and ... BP 0.00139698284896797 NDHG//YCF4//YCF10//PETA//HEMC//ATLFNR1//ENH1//ATMDAR1//ACO1//PBA1//ATPC1//NDF4//AT2G43560//AT1G63610//c-NAD-MDH1//CRR3 GO:1902600 hydrogen ion transmembrane transport BP 0.00161187081788427 ATP5//ATVHA-C3//AHA2//ATPC1 GO:0009767 photosynthetic electron transport chain BP 0.0025002939293952 PETA//ATLFNR1//ATPC1//NDF4//CRR3 GO:0010207 photosystem II assembly BP 0.00374508433169023 YCF4//PETA//ATLFNR1//ENH1//ATPC1//AT2G43560//AT1G63610 GO:0009773 photosynthetic electron transport in pho... BP 0.00395797789025818 ATLFNR1//ATPC1//NDF4//CRR3 GO:1990267 response to transition metal nanoparticl... BP 0.00427842378306083 ATP5//ACO1//PBA1//AT3G12900//c-NAD-MDH1 GO:0080167 response to karrikin BP 0.00513288184789058 AT5G48540//ATFLS1//AtSIP2//ATNRT2.6//AGP26 GO:0048646 anatomical structure formation involved ... BP 0.00574684686984231 AT3G56900//AT5G58100//AT5G11780//AT5G02370//AT1G21810//AtHaspin//AT2G02970//AGL30//STI GO:0048449 floral organ formation BP 0.00788795064402563 AT3G56900//AT5G11780//AT5G02370//AT1G21810//AtHaspin//STI GO:0022900 electron transport chain BP 0.0102545098261256 PETA//ATLFNR1//ATPC1//NDF4//CRR3 GO:0007030 Golgi organization BP 0.0122046144238813 AT4G14160//ACO1//PBA1//AT3G07950//c-NAD-MDH1//KCS11 GO:0098655 cation transmembrane transport BP 0.0123549210114787 ATP5//ATVHA-C3//AHA2//ATPC1//ATNHD1 GO:0098662 inorganic cation transmembrane transport BP 0.0123549210114787 ATP5//ATVHA-C3//AHA2//ATPC1//ATNHD1 GO:0006970 response to osmotic stress BP 0.0124133068567213 AT4G14160//ATPAP26//ATSTP13//AT5G47390//ATMDAR1//ACO1//PBA1//AT3G07950//BGLU36//ATHPP2C5//c-NAD-MDH1//RCI3//KCS11 GO:0098660 inorganic ion transmembrane transport BP 0.012922346364335 ATP5//ATVHA-C3//AHA2//ATPC1//ATNHD1 GO:0022607 cellular component assembly BP 0.0140783780520798 YCF4//PETA//ATLFNR1//AT5G58100//AT5G57200//ENH1//ATP5//PBA1//ATPC1//AT2G43560//AT1G63610//AT2G17033//AtHaspin//AT2G02970//AGL30//STI GO:0010584 pollen exine formation BP 0.0142546602106335 AT5G58100//AT2G02970//AGL30 GO:0010039 response to iron ion BP 0.0154594688174922 ATP5//ACO1//AT3G12900 GO:0010208 pollen wall assembly BP 0.0154594688174922 AT5G58100//AT2G02970//AGL30 GO:0010927 cellular component assembly involved in ... BP 0.0154594688174922 AT5G58100//AT2G02970//AGL30 GO:0085029 extracellular matrix assembly BP 0.0154594688174922 AT5G58100//AT2G02970//AGL30 GO:0048444 floral organ morphogenesis BP 0.0156910145513033 AT3G56900//AT5G11780//AT5G02370//AT1G21810//AtHaspin//STI GO:0048563 post-embryonic organ morphogenesis BP 0.0156910145513033 AT3G56900//AT5G11780//AT5G02370//AT1G21810//AtHaspin//STI GO:1902170 cellular response to reactive nitrogen s... BP 0.016710953081394 ATNRT2.4//AT3G12900 GO:0010256 endomembrane system organization BP 0.0173774113124444 AT4G14160//ACO1//PBA1//AT3G07950//c-NAD-MDH1//KCS11 GO:0031347 regulation of defense response BP 0.0186772161528018 RLM3//AtCRLK2//ATLFNR1//AT5G38980//ATCRR3//PBA1//AT4G20830//MAPKKK9//AT1G76110 GO:0018198 peptidyl-cysteine modification BP 0.0192995730644399 HEMC//ATMDAR1 GO:0030198 extracellular matrix organization BP 0.0194092258451631 AT5G58100//AT2G02970//AGL30 GO:0043062 extracellular structure organization BP 0.0194092258451631 AT5G58100//AT2G02970//AGL30 GO:0006754 ATP biosynthetic process BP 0.0208381649031841 ATP5//AHA2//ATPC1 GO:0009887 organ morphogenesis BP 0.0212540113195775 HEMC//AT3G56900//AT5G11780//AT5G02370//ATPC1//HST//AT1G76110//AT1G21810//AtHaspin//STI GO:0006979 response to oxidative stress BP 0.0218112682447283 ATP5//HSP17.6II//AtSIP2//ACO1//AT4G20830//AT3G12900//AT3G10680//RCI3//AtGolS4 GO:0048437 floral organ development BP 0.0221184531175442 AT3G56900//AT5G11780//AT5G02370//AT3G58140//AT1G21810//ATHPP2C5//AGO5//AtHaspin//AT2G02970//STI GO:0080134 regulation of response to stress BP 0.0237637263038339 RLM3//AtCRLK2//ATLFNR1//AT5G38980//ATCRR3//PBA1//AT4G20830//MAPKKK9//AT1G76110 GO:0009145 purine nucleoside triphosphate biosynthe... BP 0.0238650733628514 ATP5//AHA2//ATPC1 GO:0009201 ribonucleoside triphosphate biosynthetic... BP 0.0238650733628514 ATP5//AHA2//ATPC1 GO:0009206 purine ribonucleoside triphosphate biosy... BP 0.0238650733628514 ATP5//AHA2//ATPC1 GO:0009142 nucleoside triphosphate biosynthetic pro... BP 0.0254630417355632 ATP5//AHA2//ATPC1 GO:0009828 plant-type cell wall loosening BP 0.0279819434401774 ATEXPB2//ATEXPB1 GO:0055072 iron ion homeostasis BP 0.0279819434401774 ATP5//ACO1 GO:0048645 organ formation BP 0.0284989204871873 AT3G56900//AT5G11780//AT5G02370//AT1G21810//AtHaspin//STI GO:0043933 macromolecular complex subunit organizat... BP 0.0292633525162511 YCF4//PETA//AT3G56900//ATLFNR1//AT5G57200//ENH1//ATP5//AT5G11780//AT5G02370//TRM7//PBA1//ATPC1//CHR40//AT2G43560//AT1G63610//AT1G76110//AtHaspin//STI GO:0055114 oxidation-reduction process BP 0.0304739351613753 NDHG//PETA//ATLFNR1//AT5G51930//ATFLS1//AT3G61400//AT3G56460//ATMDAR1//PBA1//AT4G20830//AT4G10500//ATPC1//AT4G01930//AT4G01760//AT3G12900//CYP705A20//NDF4//c-NAD-MDH1//RCI3//CRR3 GO:0043067 regulation of programmed cell death BP 0.0307364630648542 AtCRLK2//ATLFNR1//ANAC104//ATCRR3//PBA1//AT4G20830//AT1G76110 GO:0044085 cellular component biogenesis BP 0.0336441794900802 YCF4//PETA//HEMC//ATLFNR1//AT5G58100//AT5G57200//ENH1//ATP5//AT3G45700//PBA1//ATPC1//ATGLCAK//AT2G43560//AT1G63610//AT2G17033//AtHaspin//AT2G02970//AGL30//STI//KCS11 GO:0010941 regulation of cell death BP 0.0338135913354976 AtCRLK2//ATLFNR1//ANAC104//ATCRR3//PBA1//AT4G20830//AT1G76110 GO:0000086 G2/M transition of mitotic cell cycle BP 0.0342940977143213 AT5G02370//TRM7//AtHaspin GO:0010389 regulation of G2/M transition of mitotic... BP 0.0342940977143213 AT5G02370//TRM7//AtHaspin GO:0044839 cell cycle G2/M phase transition BP 0.0342940977143213 AT5G02370//TRM7//AtHaspin GO:1902749 regulation of cell cycle G2/M phase tran... BP 0.0342940977143213 AT5G02370//TRM7//AtHaspin GO:0015988 energy coupled proton transmembrane tran... BP 0.0344814057573182 ATVHA-C3//AHA2 GO:0015991 ATP hydrolysis coupled proton transport BP 0.0344814057573182 ATVHA-C3//AHA2 GO:0052541 plant-type cell wall cellulose metabolic... BP 0.0344814057573182 AHA2//AT3G05900 GO:0006090 pyruvate metabolic process BP 0.038165677612992 HEMC//AT3G58140//ATMDAR1//ACO1//PBA1//ATPC1//NDF4//AT2G43560//c-NAD-MDH1 GO:0009127 purine nucleoside monophosphate biosynth... BP 0.0382154094109716 ATP5//AHA2//ATPC1 GO:0009168 purine ribonucleoside monophosphate bios... BP 0.0382154094109716 ATP5//AHA2//ATPC1 GO:0043623 cellular protein complex assembly BP 0.0384820259541203 YCF4//PETA//ATLFNR1//AT5G57200//ENH1//ATP5//PBA1//ATPC1//AT2G43560//AT1G63610//STI GO:0042451 purine nucleoside biosynthetic process BP 0.04025828792115 ATP5//AHA2//ATPC1 GO:0046129 purine ribonucleoside biosynthetic proce... BP 0.04025828792115 ATP5//AHA2//ATPC1 GO:0034220 ion transmembrane transport BP 0.0412833854565201 ATP5//ATVHA-C3//AHA2//ATPC1//ATNHD1 GO:0015985 energy coupled proton transport, down el... BP 0.0415031107783641 ATP5//ATPC1 GO:0015986 ATP synthesis coupled proton transport BP 0.0415031107783641 ATP5//ATPC1 GO:0006818 hydrogen transport BP 0.0415060197428636 ATP5//ATVHA-C3//AHA2//ATPC1 GO:0015992 proton transport BP 0.0415060197428636 ATP5//ATVHA-C3//AHA2//ATPC1 GO:0009651 response to salt stress BP 0.0422419496069228 AT4G14160//ATSTP13//AT5G47390//ATMDAR1//ACO1//PBA1//AT3G07950//BGLU36//c-NAD-MDH1//RCI3//KCS11 GO:1901987 regulation of cell cycle phase transitio... BP 0.0423555131093735 AT5G02370//TRM7//AtHaspin GO:1901990 regulation of mitotic cell cycle phase t... BP 0.0423555131093735 AT5G02370//TRM7//AtHaspin GO:0006461 protein complex assembly BP 0.0428235744556146 YCF4//PETA//ATLFNR1//AT5G57200//ENH1//ATP5//PBA1//ATPC1//AT2G43560//AT1G63610//AtHaspin//STI GO:0018193 peptidyl-amino acid modification BP 0.0434512117618926 HEMC//AT3G56900//TRM7//ATMDAR1//CHR40//AT2G43560//AtHaspin//STI GO:0070271 protein complex biogenesis BP 0.0440635231386654 YCF4//PETA//ATLFNR1//AT5G57200//ENH1//ATP5//PBA1//ATPC1//AT2G43560//AT1G63610//AtHaspin//STI GO:0009152 purine ribonucleotide biosynthetic proce... BP 0.0445066964597966 ATP5//AHA2//ATPC1 GO:0048367 shoot system development BP 0.0455455950410676 HEMC//AT3G56900//ANAC104//AT5G11780//AT5G02370//AT3G58140//ABCG18//ATPC1//CHR40//HST//AT1G76110//AT1G21810//ATHPP2C5//AGO5//AtHaspin//AT2G02970//STI GO:0044770 cell cycle phase transition BP 0.0467114213879552 AT5G02370//TRM7//AtHaspin GO:0044772 mitotic cell cycle phase transition BP 0.0467114213879552 AT5G02370//TRM7//AtHaspin GO:0009163 nucleoside biosynthetic process BP 0.0489692445969831 ATP5//AHA2//ATPC1 GO:0042455 ribonucleoside biosynthetic process BP 0.0489692445969831 ATP5//AHA2//ATPC1 GO:0071241 cellular response to inorganic substance BP 0.0490091418549773 ATNRT2.4//AT3G12900 GO:0065003 macromolecular complex assembly BP 0.0534509409358481 YCF4//PETA//ATLFNR1//AT5G57200//ENH1//ATP5//PBA1//ATPC1//AT2G43560//AT1G63610//AtHaspin//STI GO:0009156 ribonucleoside monophosphate biosyntheti... BP 0.053642286961335 ATP5//AHA2//ATPC1 GO:0046034 ATP metabolic process BP 0.053642286961335 ATP5//AHA2//ATPC1 GO:0006275 regulation of DNA replication BP 0.0547480955490631 AT5G02370//TRM7//ATWHY1//AtHaspin GO:0015706 nitrate transport BP 0.0547480955490631 ATNRT2.4//ATNRT2.6//AHA2//RCI3 GO:0009124 nucleoside monophosphate biosynthetic pr... BP 0.0560564976025997 ATP5//AHA2//ATPC1 GO:0006354 DNA-templated transcription, elongation BP 0.0565466674235954 NDHG//YCF4//YCF10//PETA GO:0071840 cellular component organization or bioge... BP 0.0569242196073842 YCF4//PETA//AT4G14160//HEMC//AT3G56900//AtCRLK2//ATLFNR1//AT5G58100//AT5G57200//ENH1//ATP5//AT5G11780//AT5G02370//TRM7//AT3G58140//ATCRR3//AT3G45700//ACO1//PBA1//AHA2//AT4G21323//AT4G20830//ATPC1//CHR40//AT3G07950//AT3G05900//ATGLCAK//AT2G43560//ATWHY1//AT1G63610//AT1G76110//AT2G17033//c-NAD-MDH1//AtHaspin//ATEXPB2//ATEXPB1//AT2G02970//AGL30//STI//KCS11 GO:0006733 oxidoreduction coenzyme metabolic proces... BP 0.0575735268825312 HEMC//ATLFNR1//ENH1//ATPC1//NDF4//AT2G43560 GO:0010363 regulation of plant-type hypersensitive ... BP 0.0575735268825312 AtCRLK2//ATLFNR1//ATCRR3//PBA1//AT4G20830//AT1G76110 GO:0016043 cellular component organization BP 0.0580157077402838 YCF4//PETA//AT4G14160//AT3G56900//AtCRLK2//ATLFNR1//AT5G58100//AT5G57200//ENH1//ATP5//AT5G11780//AT5G02370//TRM7//AT3G58140//ATCRR3//ACO1//PBA1//AHA2//AT4G21323//AT4G20830//ATPC1//CHR40//AT3G07950//AT3G05900//AT2G43560//ATWHY1//AT1G63610//AT1G76110//AT2G17033//c-NAD-MDH1//AtHaspin//ATEXPB2//ATEXPB1//AT2G02970//AGL30//STI//KCS11 GO:0009144 purine nucleoside triphosphate metabolic... BP 0.0585217919328623 ATP5//AHA2//ATPC1 GO:0009199 ribonucleoside triphosphate metabolic pr... BP 0.0585217919328623 ATP5//AHA2//ATPC1 GO:0009205 purine ribonucleoside triphosphate metab... BP 0.0585217919328623 ATP5//AHA2//ATPC1 GO:0006950 response to stress BP 0.0588619787202033 RLM3//AT4G14160//HEMC//AtCRLK2//ATPAP26//ATSTP13//ATLFNR1//AT5G47390//AT5G38980//ATP5//HSP17.6II//AT5G02370//AtSIP2//ATCRR3//ATMDAR1//ACO1//PBA1//AT4G20830//AT4G10500//MAPKKK9//ATCMPG1//AT3G12900//CHR40//4CL2//AT3G07950//AT3G10680//BGLU36//GBSS1//ATWHY1//AT1G76110//ATERDJ2A//RAD23A//ATHPP2C5//c-NAD-MDH1//RCI3//AtGolS4//AT2G01440//KCS11 GO:0034622 cellular macromolecular complex assembly BP 0.0590062475826813 YCF4//PETA//ATLFNR1//AT5G57200//ENH1//ATP5//PBA1//ATPC1//AT2G43560//AT1G63610//STI GO:0009141 nucleoside triphosphate metabolic proces... BP 0.0610376120455754 ATP5//AHA2//ATPC1 GO:0016101 diterpenoid metabolic process BP 0.0610978035063546 ddf2//PES1 GO:0012501 programmed cell death BP 0.0611372782695148 AtCRLK2//ATLFNR1//ANAC104//ATCRR3//PBA1//AT4G20830//AT1G76110 GO:1901698 response to nitrogen compound BP 0.0614218775824016 ATLFNR1//ATNRT2.4//AHA2//AT4G20830//ATCMPG1//AT3G12900//CHR40//RCI3//AT2G25460 GO:0006098 pentose-phosphate shunt BP 0.0620943853182841 HEMC//ATLFNR1//ENH1//NDF4//AT2G43560