GOID	TERM	ONTOLOGY	pValue	Genes
GO:0050801	ion homeostasis	BP	0.000150931075955863	ATOPT3//AtG3Pp4//ATHMA1//MSP-1//FPS1//ATSDAT//ATGLR3.6//EX1//AT4G32190//ATGLR2.4//AT4G26130//ACR11//AT1G53210//AtPIF4//PIP2;6//ATCAX1
GO:0015979	photosynthesis	BP	0.00015183908867839	MSP-1//ATPRFB//AT5G03880//STN8//LHCB4.1//CP12//SIG3//PTAC16//DEG5//ACR11//PMI1//AtCHUP1//DEG1//DAC//ATAB2//AT1G75460//CLPP6//APO1//AT1G54500//ATHM1//PSB29//PIP2;6//ALB3//AT2G44920//ARASP//AT2G37660
GO:0035304	regulation of protein dephosphorylation	BP	0.000185998207902733	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0035303	regulation of dephosphorylation	BP	0.00020383302645342	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0055080	cation homeostasis	BP	0.000216294799960355	ATOPT3//ATHMA1//MSP-1//FPS1//ATSDAT//ATGLR3.6//EX1//AT4G32190//ATGLR2.4//AT4G26130//ACR11//AT1G53210//AtPIF4//PIP2;6//ATCAX1
GO:0019684	photosynthesis, light reaction	BP	0.000235664832482921	MSP-1//ATPRFB//AT5G03880//STN8//LHCB4.1//PTAC16//DEG5//ACR11//PMI1//AtCHUP1//DEG1//DAC//ATAB2//AT1G75460//CLPP6//AT1G54500//ATHM1//PSB29//PIP2;6//ALB3//ARASP//AT2G37660
GO:0009409	response to cold	BP	0.000258038788010042	AT1G51090//RAP2.1//MSP-1//COR78//CP12//AtPIP2;1//AT4G32910//ATHVA22D//ACR11//ATSFR2//AGL4//ERD10//KCS3//RAP2.4//AT1G11210//GWD//AT1G64890//COR15B//COR15//KCS2//ATHM1//PIP2;6//LCBK2//AT2G44920//ATCAX1//AT2G37660
GO:0042592	homeostatic process	BP	0.000341871633661646	ATOPT3//AtG3Pp4//HCF164//ATHMA1//MSP-1//CcdA//FPS1//ATSDAT//AT5G03880//AT3G57070//ATGLR3.6//EX1//AT4G32190//ATGLR2.4//AT4G26130//ACR11//AT1G53210//AT1G67420//ATHM1//AtPIF4//PIP2;6//ATCAX1
GO:0009073	aromatic amino acid family biosynthetic ...	BP	0.000447661976034381	APO2//ATSUFE//FLU//ATSKL1//ATAB2//AT1G36320//ISPF//CLPP6//AT2G17033
GO:0098771	inorganic ion homeostasis	BP	0.000531690691885379	ATOPT3//AtG3Pp4//ATHMA1//ATSDAT//ATGLR3.6//EX1//AT4G32190//ATGLR2.4//AT1G53210//ATCAX1
GO:0009266	response to temperature stimulus	BP	0.000542670401696004	AT1G51090//RAP2.1//ABA1//MSP-1//FTSH11//COR78//AT-HSFA3//CP12//AtPIP2;1//AT4G32910//ATHVA22D//ACR11//ATMSD1//ATSFR2//anac046//AGL4//ERD10//KCS3//RAP2.4//AT1G11210//GWD//AT1G64890//COR15B//COR15//KCS2//ATHM1//PIP2;6//LCBK2//AT2G44920//ATCBK3//ATCAX1//AT2G37660
GO:0048878	chemical homeostasis	BP	0.000572833007820508	ATOPT3//AtG3Pp4//ATHMA1//MSP-1//FPS1//ATSDAT//ATGLR3.6//EX1//AT4G32190//ATGLR2.4//AT4G26130//ACR11//AT1G53210//AtPIF4//PIP2;6//ATCAX1
GO:0065008	regulation of biological quality	BP	0.000621130922831901	ATOPT3//AtG3Pp4//AT5G08430//HCF164//ATHMA1//MSP-1//CcdA//FPS1//ATSDAT//BKI1//BCCP//AT5G03880//AT5G01990//AT3G57070//ATGLR3.6//EX1//AT4G32915//AT4G32910//AT4G32190//ATGLR2.4//ATCIPK6//AT4G26130//AKT2//AT4G12060//ACR11//BR6OX2//ATSKL1//AT1G53210//AT1G19970//UGT74D1//COR15//RECA1//AT1G67420//PG2//CYP735A2//ATHM1//AtPIF4//PIP2;6//AT2G34590//ATCAX1//SCPL8
GO:0009668	plastid membrane organization	BP	0.000646724593784114	MSP-1//HCF106//ATPRFB//PTAC16//ATS2//ATSUFE//PMI1//AtCHUP1//DAC//ATSKL1//ATAB2//AT1G36390//ISPF//CLPP6//ATHM1//PSB29//ALB3
GO:0010027	thylakoid membrane organization	BP	0.000646724593784114	MSP-1//HCF106//ATPRFB//PTAC16//ATS2//ATSUFE//PMI1//AtCHUP1//DAC//ATSKL1//ATAB2//AT1G36390//ISPF//CLPP6//ATHM1//PSB29//ALB3
GO:0007186	G-protein coupled receptor signaling pat...	BP	0.000699079874138023	ATDGK1//ATGLR3.6//PSB29//LCBK2
GO:0019725	cellular homeostasis	BP	0.0009703738258602	ATOPT3//HCF164//ATHMA1//MSP-1//CcdA//FPS1//ATSDAT//AT5G03880//AT3G57070//ATGLR3.6//ATGLR2.4//AT4G26130//ACR11//ATHM1//AtPIF4//PIP2;6//ATCAX1
GO:0006091	generation of precursor metabolites and ...	BP	0.00103449839230156	MSP-1//AMK2//ATPRFB//AT5G03880//STN8//LHCB4.1//AT3G60180//AtPIP2;1//PTAC16//DEG5//ACR11//ATMSD1//PMI1//AtCHUP1//DEG1//DAC//ATAB2//AT1G75460//PDH-E1//CLPP6//AT-E1//AT1G54500//ATHM1//PSB29//PIP2;6//ALB3//ARASP//AT2G37660
GO:0009902	chloroplast relocation	BP	0.00114941937119788	MSP-1//ATPRFB//ATSSL4//PTAC16//PMI1//AtCHUP1//DAC//ATAB2//CLPP6//PSB29//ALB3
GO:0016109	tetraterpenoid biosynthetic process	BP	0.00114941937119788	PDE226//AAE15//ABA1//AMK2//ATCCD1//PTAC16//ATS2//FLU//ISPF//AT2G44920//ATFC-II
GO:0016117	carotenoid biosynthetic process	BP	0.00114941937119788	PDE226//AAE15//ABA1//AMK2//ATCCD1//PTAC16//ATS2//FLU//ISPF//AT2G44920//ATFC-II
GO:0019750	chloroplast localization	BP	0.00114941937119788	MSP-1//ATPRFB//ATSSL4//PTAC16//PMI1//AtCHUP1//DAC//ATAB2//CLPP6//PSB29//ALB3
GO:0051644	plastid localization	BP	0.00114941937119788	MSP-1//ATPRFB//ATSSL4//PTAC16//PMI1//AtCHUP1//DAC//ATAB2//CLPP6//PSB29//ALB3
GO:0051667	establishment of plastid localization	BP	0.00114941937119788	MSP-1//ATPRFB//ATSSL4//PTAC16//PMI1//AtCHUP1//DAC//ATAB2//CLPP6//PSB29//ALB3
GO:0016108	tetraterpenoid metabolic process	BP	0.00135150618410426	PDE226//AAE15//ABA1//AMK2//ATCCD1//PTAC16//ATS2//FLU//ISPF//AT2G44920//ATFC-II
GO:0016116	carotenoid metabolic process	BP	0.00135150618410426	PDE226//AAE15//ABA1//AMK2//ATCCD1//PTAC16//ATS2//FLU//ISPF//AT2G44920//ATFC-II
GO:0051656	establishment of organelle localization	BP	0.00135150618410426	MSP-1//ATPRFB//ATSSL4//PTAC16//PMI1//AtCHUP1//DAC//ATAB2//CLPP6//PSB29//ALB3
GO:0044711	single-organism biosynthetic process	BP	0.00139326557970535	PDE226//ATOPT3//CYP97B3//AAE15//AT5G08430//HCF164//PUT1//ATHMA1//ATGWD3//ABA1//MSP-1//AT5G65760//ASN2//PIP2;4//APO2//FTSH11//AT5G50100//ATPPOX//FPS1//GAUT4//AMK2//BKI1//ATPRFB//BCCP//CESA5//AT5G05200//AT5G01020//ATCCD1//CP12//SIG3//AtPIP2;1//F3'H//PTAC16//AtSSU//SQE3//AT4G34950//AT4G33670//ATS2//ATSUFE//AKT2//AK-HSDH//AT4G12060//AAPT1//ATMSD1//PMI1//BR6OX2//AtCHUP1//AT3G24030//AT3G23870//FLU//DEG1//DAC//ATSKL1//ATSFR2//ATAB2//AtUGP1//AOC4//AT1G55280//AT1G36320//ISPF//CLPP5//ATNADP-ME4//AT1G53100//KCS3//FMO//AT1G70820//GWD//CLPP6//AOAT1//AT2G31670//AT2G17033//AT2G21860//BLH1//ATGGH2//AT1G09150//PG2//KCS2//ATHM1//DHNS//PSB29//AT2G27290//PIP2;6//ALB3//AT2G44920//AT2G34590//AT2G34310//PSRP4//ATCAX1//AT2G31040//AT2G37660//SCPL8//ATFC-II
GO:0030003	cellular cation homeostasis	BP	0.00147699159574652	ATOPT3//ATHMA1//MSP-1//FPS1//ATSDAT//ATGLR3.6//ATGLR2.4//AT4G26130//ACR11//AtPIF4//PIP2;6//ATCAX1
GO:0006796	phosphate-containing compound metabolic ...	BP	0.00166344764328598	AT2G45340//PDE226//CYP97B3//AAE15//AT5G09290//AT4G37250//ATHMA1//ATGWD3//ABA1//MSP-1//APO2//AT5G50100//FPS1//AMK2//ATPRFB//AT5G03880//ATCIPK14//STN8//AT5G01020//ATCCD1//AT3G60180//AT3G59110//SRPK4//ATSSL4//AtIDD2//PTAC16//SQE3//ATCIPK6//ATS2//AT4G23740//AKT2//AK-HSDH//AAPT1//PMI1//AtCHUP1//FLU//DEG1//ATPK7//DAC//ATSKL1//ATAB2//ATNUDX26//ATWNK1//AT1G72180//ISPF//SNRK2-8//AT1G75460//SPA4//AT1G71710//AT1G70820//GWD//CLPP6//COR15//ATHM1//AtPIF4//PSB29//AT2G27290//ALB3//AT2G44920//AT2G34310//ATCBK3//AT2G37660//SCPL8//AT2G35050//ATFC-II//AT2G30730//AT2G41930
GO:0006793	phosphorus metabolic process	BP	0.00175706488115536	AT2G45340//PDE226//CYP97B3//AAE15//AT5G09290//AT4G37250//ATHMA1//ATGWD3//ABA1//MSP-1//APO2//AT5G50100//FPS1//AMK2//ATPRFB//BCCP//AT5G03880//ATCIPK14//STN8//AT5G01020//ATCCD1//AT3G60180//AT3G59110//SRPK4//ATSSL4//AtIDD2//PTAC16//SQE3//ATCIPK6//ATS2//AT4G23740//AKT2//AK-HSDH//AAPT1//PMI1//AtCHUP1//FLU//DEG1//ATPK7//DAC//ATSKL1//ATAB2//ATNUDX26//ATWNK1//AT1G72180//ISPF//SNRK2-8//AT1G75460//SPA4//AT1G71710//AT1G70820//GWD//CLPP6//COR15//ATHM1//AtPIF4//PSB29//AT2G27290//ALB3//AT2G44920//AT2G34590//AT2G34310//ATCBK3//AT2G37660//SCPL8//AT2G35050//ATFC-II//AT2G30730//AT2G41930
GO:0051640	organelle localization	BP	0.00182686261102176	MSP-1//AT5G55400//ATPRFB//ATSSL4//PTAC16//PMI1//AtCHUP1//DAC//ATAB2//CLPP6//PSB29//ALB3
GO:0009743	response to carbohydrate	BP	0.00190460575794578	ABA1//LHCB4.1//CP12//AtPIP2;1//AT3G52740//F3'H//SQE3//AT4G32910//ACR11//ISPF//AtATL15//GWD//AOAT1//BLH1//ATGGH2//PSB29//PIP2;6//ATCAX1
GO:0006873	cellular ion homeostasis	BP	0.00195759656702597	ATOPT3//ATHMA1//MSP-1//FPS1//ATSDAT//ATGLR3.6//ATGLR2.4//AT4G26130//ACR11//AtPIF4//PIP2;6//ATCAX1
GO:0006636	unsaturated fatty acid biosynthetic proc...	BP	0.00201978112570904	AAE15//ATCCD1//ATS2//FLU//ATSKL1//ISPF//AT2G44920//SCPL8
GO:0033559	unsaturated fatty acid metabolic process	BP	0.00201978112570904	AAE15//ATCCD1//ATS2//FLU//ATSKL1//ISPF//AT2G44920//SCPL8
GO:0006790	sulfur compound metabolic process	BP	0.00209154463428189	AT5G09290//AT5G08430//HCF164//MSP-1//AT5G65760//ASN2//APO2//FTSH11//ATPPOX//FPS1//BCCP//AT5G01020//AtPIP2;1//PTAC16//AT4G34950//AT3G24030//FLU//DEG1//ATSKL1//ATSFR2//ATAB2//ISPF//FMO//AOAT1//AT2G31670//BLH1//AT1G09150//AT2G34590//ATCAX1//SCPL8//ATFC-II
GO:0044283	small molecule biosynthetic process	BP	0.00248085073242918	AAE15//AT5G08430//PUT1//ABA1//MSP-1//AT5G65760//ASN2//APO2//AT5G50100//ATPPOX//FPS1//BKI1//BCCP//AT5G01020//ATCCD1//AtPIP2;1//SQE3//AT4G33670//ATS2//ATSUFE//AKT2//AK-HSDH//AT4G12060//BR6OX2//AT3G24030//FLU//ATSKL1//ATAB2//AOC4//AT1G55280//AT1G36320//ISPF//ATNADP-ME4//KCS3//CLPP6//AOAT1//AT2G31670//AT2G17033//AT2G21860//BLH1//AT1G09150//KCS2//DHNS//PIP2;6//AT2G44920//AT2G34590//AT2G34310//AT2G37660//SCPL8"
GO:0016144	S-glycoside biosynthetic process	BP	0.00273152121304934	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1
GO:0019758	glycosinolate biosynthetic process	BP	0.00273152121304934	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1
GO:0019761	glucosinolate biosynthetic process	BP	0.00273152121304934	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1
GO:0045893	positive regulation of transcription, DN...	BP	0.00274391335930488	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0051254	positive regulation of RNA metabolic pro...	BP	0.00274391335930488	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:1902680	positive regulation of RNA biosynthetic ...	BP	0.00274391335930488	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:1903508	positive regulation of nucleic acid-temp...	BP	0.00274391335930488	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0016226	iron-sulfur cluster assembly	BP	0.0027689138982238	APO2//ATS2//ATSUFE//ATSKL1//ATAB2//AT1G36390//AT1G36320//CLPP6//AT2G17033
GO:0031163	metallo-sulfur cluster assembly	BP	0.0027689138982238	APO2//ATS2//ATSUFE//ATSKL1//ATAB2//AT1G36390//AT1G36320//CLPP6//AT2G17033
GO:0016311	dephosphorylation	BP	0.0028093742508437	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//AT1G71710//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0055082	cellular chemical homeostasis	BP	0.00291273799177892	ATOPT3//ATHMA1//MSP-1//FPS1//ATSDAT//ATGLR3.6//ATGLR2.4//AT4G26130//ACR11//AtPIF4//PIP2;6//ATCAX1
GO:0016143	S-glycoside metabolic process	BP	0.00306813546403049	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1//ATFC-II
GO:0019757	glycosinolate metabolic process	BP	0.00306813546403049	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1//ATFC-II
GO:0019760	glucosinolate metabolic process	BP	0.00306813546403049	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1//ATFC-II
GO:0010155	regulation of proton transport	BP	0.00329027138321476	PDE226//APO2//AMK2//LHCB4.1//CP12//ATSSL4//ATAB2//ISPF
GO:0055065	metal ion homeostasis	BP	0.00329027138321476	ATOPT3//ATHMA1//ATGLR3.6//EX1//AT4G32190//ATGLR2.4//AT1G53210//ATCAX1
GO:0044272	sulfur compound biosynthetic process	BP	0.0034051394753373	AT5G08430//HCF164//MSP-1//AT5G65760//ASN2//APO2//FTSH11//ATPPOX//AT5G01020//AtPIP2;1//PTAC16//AT4G34950//AT3G24030//FLU//DEG1//ATSKL1//ATSFR2//ATAB2//ISPF//FMO//AOAT1//AT2G31670//BLH1//AT1G09150//ATCAX1//SCPL8
GO:0009893	positive regulation of metabolic process	BP	0.00345181412514829	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//AT5G05200//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//DAC//ATSKL1//ATAB2//AtUGP1//ISPF//CLPP6//AT1G54500//BLH1//ATHM1//PSB29//AT2G27290//ALB3//AT2G44920//PSKF109//AT2G31040//ATFC-II
GO:0006633	fatty acid biosynthetic process	BP	0.00351571531982355	AAE15//BCCP//ATCCD1//ATS2//FLU//ATSKL1//ISPF//ATNADP-ME4//KCS3//KCS2//AT2G44920//SCPL8
GO:0006470	protein dephosphorylation	BP	0.00365036754371554	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0010628	positive regulation of gene expression	BP	0.00380660102768649	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0045935	positive regulation of nucleobase-contai...	BP	0.00380660102768649	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0051173	positive regulation of nitrogen compound...	BP	0.00428480817971007	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0032879	regulation of localization	BP	0.00447239926110081	PDE226//APO2//FTSH11//AMK2//LHCB4.1//AT5G01020//CP12//ATSSL4//ATAB2//ISPF//AT1G19970//ATCAX1
GO:0031399	regulation of protein modification proce...	BP	0.00456298584052386	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0042793	transcription from plastid promoter	BP	0.00469474071644679	MSP-1//ATPRFB//PMI1//AtCHUP1//ATAB2//CLPP6//PSB29//ALB3
GO:0044802	single-organism membrane organization	BP	0.00478229803578881	MSP-1//HCF106//ATPRFB//AtIDD2//PTAC16//ATS2//ATSUFE//PMI1//AtCHUP1//DAC//ATSKL1//ATAB2//AT1G36390//ISPF//AT1G75460//CLPP6//COR15//BLH1//ATHM1//AtPIF4//PSB29//ALB3
GO:0010557	positive regulation of macromolecule bio...	BP	0.00499906778518751	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0019220	regulation of phosphate metabolic proces...	BP	0.0050837382431136	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0051174	regulation of phosphorus metabolic proce...	BP	0.0050837382431136	MSP-1//ATPRFB//AT5G03880//AtIDD2//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0006778	porphyrin-containing compound metabolic ...	BP	0.00515949087227946	AAE15//CLPX//AT5G05200//ATCCD1//PTAC16//ATS2//HEMG1//FLU//DEG1//ATSKL1//ISPF//AT1G04350//AT2G44920//AT2G37660//ATFC-II
GO:0061024	membrane organization	BP	0.00531795011841715	MSP-1//HCF106//ATPRFB//AtIDD2//PTAC16//ATS2//ATSUFE//PMI1//AtCHUP1//DAC//ATSKL1//ATAB2//AT1G36390//ISPF//AT1G75460//CLPP6//COR15//BLH1//ATHM1//AtPIF4//PSB29//ALB3
GO:0033013	tetrapyrrole metabolic process	BP	0.00540847861772393	AAE15//CLPX//AT5G05200//ATCCD1//PTAC16//ATS2//HEMG1//FLU//DEG1//ATSKL1//ISPF//AT1G04350//AT2G44920//AT2G37660//ATFC-II
GO:0042254	ribosome biogenesis	BP	0.00540847861772393	MSP-1//AT5G53070//ATPRFB//LHCB4.1//PTAC16//PMI1//AtCHUP1//FLU//ATAB2//ISPF//CLPP6//ATHM1//PSB29//ALB3//AT2G37660
GO:0022613	ribonucleoprotein complex biogenesis	BP	0.00566710892437111	MSP-1//AT5G53070//ATPRFB//LHCB4.1//PTAC16//PMI1//AtCHUP1//FLU//ATAB2//ISPF//CLPP6//ATHM1//PSB29//ALB3//AT2G37660
GO:0031328	positive regulation of cellular biosynth...	BP	0.00580902056739956	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0009628	response to abiotic stimulus	BP	0.00599393101329738	ATOPT3//AT1G51090//RAP2.1//AT5G09290//AT5G08430//ATHMA1//ATCOL1//ABA1//MSP-1//ASN2//APO2//FTSH11//AT5G52660//COR78//FPS1//AT5G19150//BCCP//AT-HSFA3//LHCB4.1//ATCCD1//CP12//SIG3//AtPIP2;1//AT3G52740//ATGLR3.6//F3'H//PTAC16//SQE3//AT4G32910//ATGLR2.4//ATCIPK6//ATHVA22D//DFL2//ACR11//ATMSD1//FLU//ASPG1//ATSFR2//ATAB2//anac046//AtUGP1//AGL4//ERD10//ISPF//AT1G53210//SNRK2-8//SPA4//KCS3//AtATL15//RAP2.4//AT1G70820//AT1G11210//GWD//AT1G64890//AOAT1//COR15B//COR15//BLH1//AT1G67420//ATGGH2//PG2//KCS2//ATHM1//AtPIF4//PIP2;6//LCBK2//AT2G44920//ATCBK3//ATCAX1//AT2G37660
GO:0006364	rRNA processing	BP	0.00644323639148107	MSP-1//ATPRFB//LHCB4.1//PTAC16//PMI1//AtCHUP1//FLU//ATAB2//ISPF//CLPP6//ATHM1//PSB29//ALB3//AT2G37660
GO:0010604	positive regulation of macromolecule met...	BP	0.00648484076286051	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0044281	small molecule metabolic process	BP	0.00653527138628432	AT4G16800//CYP97B3//AAE15//AT5G08430//HCF164//PUT1//ATHMA1//ABA1//MSP-1//AT5G65760//ASN2//DCT//APO2//FTSH11//AT5G50100//ATPPOX//FPS1//AMK2//AT5G45950//BKI1//BCCP//ATNUDX27//AT5G01020//ATCCD1//AT3G60180//AtPIP2;1//PTAC16//SQE3//AT4G34950//AT4G33670//ATS2//ATSUFE//AKT2//AK-HSDH//AT4G12060//AT4G01610//ATMSD1//BR6OX2//AT3G24030//FLU//DEG1//DAC//ATSKL1//ATFAO3//ATSFR2//ATAB2//ATNUDX26//AOC4//AT1G55280//AT1G36320//ISPF//ATNADP-ME4//KCS3//AT1G71710//PDH-E1//FMO//AT1G70820//CLPP6//AT-E1//AOAT1//AT2G31670//AT2G17033//AT2G21860//BLH1//ATGGH2//AT1G09150//KCS2//ATHM1//DHNS//PSB29//PIP2;6//LCBK2//AT2G44920//AtGLDP2//AT2G34590//AT2G34310//ATCAX1//AT2G37660//SCPL8//ATFC-II
GO:0016072	rRNA metabolic process	BP	0.00675826091365262	MSP-1//ATPRFB//LHCB4.1//PTAC16//PMI1//AtCHUP1//FLU//ATAB2//ISPF//CLPP6//ATHM1//PSB29//ALB3//AT2G37660
GO:0034470	ncRNA processing	BP	0.00680343195158737	MSP-1//ATPRFB//LHCB4.1//PTAC16//PMI1//AtCHUP1//FLU//ATAB2//ISPF//AT1G78010//CLPP6//ATHM1//PSB29//ALB3//AT2G37660
GO:0007166	cell surface receptor signaling pathway	BP	0.00704946313133244	AT2G45340//AT4G37250//ATDGK1//ATGLR3.6//AT4G23740//AT1G72180//PSB29//LCBK2
GO:0072507	divalent inorganic cation homeostasis	BP	0.00750155243862407	ATHMA1//ATGLR3.6//ATGLR2.4//AT1G53210//ATCAX1
GO:0006508	proteolysis	BP	0.00797751302663597	AT4G16190//ARA12//AT5G65760//AT5G59130//FTSH11//AT5G44530//AT5G04710//AT3G57470//ATSBT3.18//DEG5//scpl20//AT4G01610//ATMSD1//DEG1//MAP1B//ASPG1//CLPP5//AT1G75460//ATNADP-ME4//BETA-VPE//CLPP6//AT1G67420//AT2G16810//ARASP//SCPL8
GO:1901659	glycosyl compound biosynthetic process	BP	0.00804722664294675	HCF164//ATHMA1//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATCAX1
GO:0044550	secondary metabolite biosynthetic proces...	BP	0.00814354798661372	HCF164//APO2//FTSH11//ATPPOX//PTAC16//AT4G34950//DEG1//ATSFR2//ATAB2//FMO//AT2G31670//ATGGH2//KCS2//ATCAX1
GO:0006779	porphyrin-containing compound biosynthet...	BP	0.00820973345576019	AAE15//ATCCD1//PTAC16//ATS2//HEMG1//FLU//ATSKL1//ISPF//AT2G44920//AT2G37660//ATFC-II
GO:0031325	positive regulation of cellular metaboli...	BP	0.00831445343797466	RAP2.1//AT5G28300//MSP-1//CIA2//ATPRFB//ATSSL4//AtIDD2//AT4G32910//PMI1//AtCHUP1//FLU//ATSKL1//ATAB2//ISPF//CLPP6//AT1G54500//ATHM1//PSB29//AT2G27290//ALB3
GO:0017004	cytochrome complex assembly	BP	0.00842923969340282	HCF164//CcdA//DAC
GO:0005982	starch metabolic process	BP	0.00884391519399018	AAE15//ATGWD3//APO2//AT5G05200//DAC//ATSFR2//AtUGP1//CLPP5//AT1G70820//GWD//PG2//ATHM1//AT2G31040//AT2G37660//ATFC-II
GO:0009631	cold acclimation	BP	0.00909048582400653	ERD10//GWD//COR15//ATCAX1
GO:0010207	photosystem II assembly	BP	0.00909346446534751	MSP-1//ATPRFB//PMI1//AtCHUP1//DAC//ATAB2//AT1G75460//CLPP6//ATHM1//PSB29//ALB3//ARASP
GO:0032268	regulation of cellular protein metabolic...	BP	0.00932326112766097	MSP-1//ATPRFB//AT5G03880//AtIDD2//AT4G32915//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0033014	tetrapyrrole biosynthetic process	BP	0.00967575843392059	AAE15//ATCCD1//PTAC16//ATS2//HEMG1//FLU//ATSKL1//ISPF//AT2G44920//AT2G37660//ATFC-II
GO:0051246	regulation of protein metabolic process	BP	0.0101818458698878	MSP-1//ATPRFB//AT5G03880//AtIDD2//AT4G32915//PMI1//AtCHUP1//ATAB2//AT1G75460//CLPP6//COR15//AtPIF4//PSB29//ALB3
GO:0016114	terpenoid biosynthetic process	BP	0.0111815415883447	PDE226//AAE15//ABA1//FPS1//AMK2//ATCCD1//PTAC16//SQE3//ATS2//FLU//ISPF//AT2G44920//ATFC-II
GO:0019252	starch biosynthetic process	BP	0.0116975242883863	AAE15//ATGWD3//APO2//AT5G05200//DAC//ATSFR2//AtUGP1//CLPP5//AT1G70820//GWD//ATHM1//AT2G31040//ATFC-II
GO:0015994	chlorophyll metabolic process	BP	0.0122317846486019	AAE15//CLPX//AT5G05200//ATCCD1//PTAC16//ATS2//FLU//DEG1//ATSKL1//ISPF//AT1G04350//AT2G44920//AT2G37660
GO:0009414	response to water deprivation	BP	0.0123476371373297	AT1G51090//RAP2.1//ABA1//COR78//ATCCD1//AtPIP2;1//ATCIPK6//ATHVA22D//ASPG1//ERD10//RAP2.4//AT1G70820//AT1G11210//AT1G64890//COR15B//COR15
GO:0016053	organic acid biosynthetic process	BP	0.0128429401517461	AAE15//AT5G08430//ABA1//MSP-1//AT5G65760//ASN2//APO2//BCCP//AT5G01020//ATCCD1//AtPIP2;1//AT4G33670//ATS2//ATSUFE//AK-HSDH//AT4G12060//FLU//ATSKL1//ATAB2//AOC4//AT1G55280//AT1G36320//ISPF//ATNADP-ME4//KCS3//CLPP6//AOAT1//AT2G31670//AT2G17033//BLH1//AT1G09150//KCS2//PIP2;6//AT2G44920//AT2G37660//SCPL8
GO:0046394	carboxylic acid biosynthetic process	BP	0.0128429401517461	AAE15//AT5G08430//ABA1//MSP-1//AT5G65760//ASN2//APO2//BCCP//AT5G01020//ATCCD1//AtPIP2;1//AT4G33670//ATS2//ATSUFE//AK-HSDH//AT4G12060//FLU//ATSKL1//ATAB2//AOC4//AT1G55280//AT1G36320//ISPF//ATNADP-ME4//KCS3//CLPP6//AOAT1//AT2G31670//AT2G17033//BLH1//AT1G09150//KCS2//PIP2;6//AT2G44920//AT2G37660//SCPL8