GOID TERM ONTOLOGY pValue Genes GO:0009741 response to brassinosteroid BP 0.000446251083993987 AT5G57340//MAKR6//AT4G37295//AT1G67050//AT1G56220//AT2G41820//BRL2//SPL3 GO:0006869 lipid transport BP 0.00087190575391283 AT5G05960//AT3G58550//ATGLTP1//CWLP//AT3G18280//AT3G27870//AT1G68710//EDA4//AT2G48130//ATNHX7//AT2G18370 GO:0010876 lipid localization BP 0.00278463651722333 AT5G05960//AT3G58550//ATGLTP1//CWLP//AT3G18280//AT3G27870//APC13//AT1G68710//EDA4//AT2G48130//ATNHX7//AT2G18370 GO:0009958 positive gravitropism BP 0.012242287778802 CLEL//ATSNX1//ATPIN3 GO:0000023 maltose metabolic process BP 0.0133029233056229 ATFRO8//AT4G30020//AT1G76450//AT1G07280//AT2G36145//AT2G01870//AT1G22630 GO:0000041 transition metal ion transport BP 0.0145830923706461 AT4G15390//ATFLS5//AT5G60530//AT5G23830//GAD//AT3G62270//AT4G22212//ATWRKY65//EDA4//AT2G48130//AT2G21045//UGT71C1 GO:0033993 response to lipid BP 0.0148225151675273 AT1G73480//MAP1D//ASG1//AtMYB28//AT5G57340//MAKR6//AT5G47390//MARD1//AHUS5//AT4G37295//AIRP1//GASA2//AtMYB51//AT1G67050//AT1G56220//GASA5//ATGID1A//AT2G41820//ACO2//AGL67//PAP3//BRL2//AT2G26110//SPL3 GO:0048316 seed development BP 0.0164987552022113 ATYSL3//MEE62//MARD1//AHUS5//MEE40//MEE59//ATS2//ATYSL1//UNE15//MEE57//CLE44//MEE51//ATGID1A//APC13//ATSUC5//ATHB13//ATUSPL1//ATMST1//emb2411 GO:0009739 response to gibberellin BP 0.0188564150431468 AtMYB28//AT5G47390//GASA2//AtMYB51//GASA5//ATGID1A//AGL67//PAP3 GO:0010154 fruit development BP 0.0200255509742277 ATYSL3//MEE62//MARD1//AHUS5//MEE40//MEE59//ATS2//ATYSL1//UNE15//MEE57//CLE44//MEE51//ATGID1A//APC13//ATSUC5//ATHB13//ATUSPL1//ATMST1//emb2411 GO:0006888 ER to Golgi vesicle-mediated transport BP 0.0220050266542387 AHA2//AT4G11670//AT1G80500//AT2G20930//AT2G03510 GO:0048507 meristem development BP 0.0239250007333638 SPL2//AGL1//AT3G55720//CLE44//APC13//ATPIN3//ATCLV1//AGL3//BRL2//AT2G19970//LSH3//SPL3 GO:0006857 oligopeptide transport BP 0.0256464991905976 AT5G14940//ATYSL3//AHA2//ATYSL1//AT3G01350//AtPTR6 GO:0015833 peptide transport BP 0.0256464991905976 AT5G14940//ATYSL3//AHA2//ATYSL1//AT3G01350//AtPTR6 GO:0048509 regulation of meristem development BP 0.026986826581622 SPL2//AT3G55720//ATPIN3//ATCLV1//BRL2//AT2G19970//LSH3 GO:0010167 response to nitrate BP 0.0315329347677084 ATFLS5//GAD//AT3G62270//AHA2//ATSERAT2;1//ATWRKY65//AT2G48130//ATBCA4//AT2G21045//UGT71C1 GO:0044070 regulation of anion transport BP 0.0335297841306611 ATRBOHC//GAD//ATVDAC5//AT2G21045 GO:0042886 amide transport BP 0.0340619885539254 AT5G14940//ATYSL3//AHA2//ATYSL1//AT3G01350//AtPTR6 GO:0048193 Golgi vesicle transport BP 0.0346503513096427 ATSNX1//AHA2//GGP3//AT4G19860//AT4G11670//AT1G16840//AT1G80500//AT1G53400//ATNHX7//AT2G20930//AT2G03510 GO:0009311 oligosaccharide metabolic process BP 0.0352644123404363 ATFRO8//AT4G30020//ATGID1A//AT1G76450//AT1G07280//AT2G36145//TPPE//AT2G01870//AT1G22630 GO:0015706 nitrate transport BP 0.0360029194124942 ATFLS5//GAD//AT3G62270//AHA2//ATSERAT2;1//ATWRKY65//AT2G48130//ATBCA4//AT2G21045//UGT71C1 GO:0044272 sulfur compound biosynthetic process BP 0.0360253697400008 ASN2//AtMYB28//ATFRO8//AtPPa6//AT3G61540//GGP3//AT4G30020//ATSMO1-2//AtMYB51//AtDJ1A//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATMST1//ATSERAT3;1 GO:0046283 anthocyanin-containing compound metaboli... BP 0.0370325093431211 ATFLS5//AHP3//AT1G16310//PAP3 GO:0019344 cysteine biosynthetic process BP 0.0405209221714117 ASN2//AtPPa6//AT3G61540//ATSMO1-2//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATSERAT3;1 GO:0006534 cysteine metabolic process BP 0.0423849579543135 ASN2//AtPPa6//AT3G61540//ATSMO1-2//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATSERAT3;1 GO:0048443 stamen development BP 0.0440842314918103 SPL2//AGL1//AT4G33040//CTF7//AGL3//BRL2 GO:0048466 androecium development BP 0.0440842314918103 SPL2//AGL1//AT4G33040//CTF7//AGL3//BRL2 GO:0019252 starch biosynthetic process BP 0.0455835740184251 ATFRO8//AT4G30020//AT1G76450//AT1G07280//AT2G36145//AT2G01870//AT1G22630 GO:0009069 serine family amino acid metabolic proce... BP 0.0500305566970765 ASN2//AtPPa6//AT3G61540//GGP3//ATSMO1-2//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATSERAT3;1 GO:0009070 serine family amino acid biosynthetic pr... BP 0.0504160742235687 ASN2//AtPPa6//AT3G61540//ATSMO1-2//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATSERAT3;1 GO:0009827 plant-type cell wall modification BP 0.0506094780710251 BST1//AT5G16500//AT3G55890//AT4G37295//AT3G28490//ANX1//SPL3 GO:0005984 disaccharide metabolic process BP 0.0522616291295704 ATFRO8//AT4G30020//AT1G76450//AT1G07280//AT2G36145//TPPE//AT2G01870//AT1G22630 GO:0000097 sulfur amino acid biosynthetic process BP 0.0527447679799175 ASN2//AtPPa6//AT3G61540//GGP3//ATSMO1-2//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATMST1//ATSERAT3;1 GO:0010075 regulation of meristem growth BP 0.0564690183606411 AT3G55720//ATPIN3//BRL2//AT2G19970//LSH3 GO:0042221 response to chemical BP 0.0568922436760713 AT1G73480//MAP1D//ASG1//AT5G14730//AT5G65750//AAP4//ATFLS5//AtMYB28//AT5G57340//FQR1//MAKR6//CAA33//ATRBOHC//AT5G47390//AHP3//CSD3//GAD//AT5G16500//ATCYS1//AtPPa6//ABCG22//ATSNX1//MARD1//AT3G62270//AHUS5//ATMYB48//AT4G37295//AHA2//AT4G30390//AT4G30020//IAA11//ATYSL1//AIRP1//AT4G22790//RHA1B//GASA2//AT4G02410//GT72B1//AtMYB51//AT1G67050//DIN9//AT1G56220//AT3G29410//DIN4//UBC19//AtDJ1A//AT3G06760//GASA5//ATGID1A//AT1G69080//ERD2//APC13//ATHB13//AT2G41820//ATSERAT2;1//ACO2//ATWRKY65//ATGRAS2//ATERF-8//AtMYB47//AT1G14450//TGA7//AGL67//ATPIN3//AT2G48130//AT1G16310//ATWRKY17//ATERF15//ATBCA4//PAP3//BRL2//ATNHX7//AT2G20270//AT2G21045//HIS1-3//AtEIL1//AT2G46690//AT2G41250//UGT71C1//AT2G26110//SPL3 GO:1901700 response to oxygen-containing compound BP 0.0573275085762397 AT1G73480//MAP1D//ASG1//AAP4//ATFLS5//AtMYB28//AT5G57340//MAKR6//CAA33//ATRBOHC//AT5G47390//CSD3//GAD//ATCYS1//AtPPa6//ABCG22//MARD1//AT3G62270//AHUS5//ATMYB48//AT4G37295//AHA2//AIRP1//RHA1B//GASA2//AT4G02410//AtMYB51//AT1G67050//DIN9//AT1G56220//DIN4//AT3G06760//GASA5//ATGID1A//APC13//ATHB13//AT2G41820//ATSERAT2;1//ACO2//ATWRKY65//AtMYB47//AGL67//AT2G48130//AT1G16310//ATWRKY17//ATERF15//ATBCA4//PAP3//BRL2//ATNHX7//AT2G20270//AT2G21045//HIS1-3//UGT71C1//AT2G26110//SPL3 GO:0010224 response to UV-B BP 0.0575817932428306 ATFLS5//CSD3//UBQ3//AT1G16310 GO:0010106 cellular response to iron ion starvation BP 0.0589656404859552 ATFLS5//AT3G62270//ATWRKY65//AT2G48130//AT2G21045//UGT71C1 GO:0009725 response to hormone BP 0.0606366298725346 AT1G73480//MAP1D//ASG1//AtMYB28//AT5G57340//FQR1//MAKR6//AT5G47390//AHP3//AtPPa6//MARD1//AHUS5//AT4G37295//AT4G30390//AT4G30020//IAA11//AIRP1//GASA2//AtMYB51//AT1G67050//AT1G56220//AT3G29410//GASA5//ATGID1A//AT2G41820//ACO2//ATERF-8//AtMYB47//AGL67//ATPIN3//ATERF15//PAP3//BRL2//AtEIL1//AT2G46690//AT2G26110//SPL3 GO:0010359 regulation of anion channel activity BP 0.0634790482757273 ATRBOHC//GAD//AT2G21045 GO:0034599 cellular response to oxidative stress BP 0.0634790482757273 CSD3//AtDJ1A//ACO2 GO:1903959 regulation of anion transmembrane transp... BP 0.0634790482757273 ATRBOHC//GAD//AT2G21045 GO:0035266 meristem growth BP 0.0641540032978209 AT3G55720//ATPIN3//BRL2//AT2G19970//LSH3 GO:0009830 cell wall modification involved in absci... BP 0.0649799779104276 AT3G55890//AT4G37295 GO:0015914 phospholipid transport BP 0.0649799779104276 AT3G27870//AT1G68710 GO:0044277 cell wall disassembly BP 0.0649799779104276 AT3G55890//AT4G37295 GO:0006213 pyrimidine nucleoside metabolic process BP 0.0760378238376098 ATTMPK.1//NDPK3 GO:0006563 L-serine metabolic process BP 0.0760378238376098 ATSERAT2;1//ATSERAT3;1 GO:0009636 response to toxic substance BP 0.0760378238376098 GT72B1//DIN9 GO:0010229 inflorescence development BP 0.0760378238376098 APC13//SPL3 GO:0071281 cellular response to iron ion BP 0.0760378238376098 ACO2//AtEIL1 GO:0022898 regulation of transmembrane transporter ... BP 0.0771236268666795 ATRBOHC//GAD//AT2G21045 GO:0032409 regulation of transporter activity BP 0.0771236268666795 ATRBOHC//GAD//AT2G21045 GO:0032412 regulation of ion transmembrane transpor... BP 0.0771236268666795 ATRBOHC//GAD//AT2G21045 GO:0034762 regulation of transmembrane transport BP 0.0771236268666795 ATRBOHC//GAD//AT2G21045 GO:0034765 regulation of ion transmembrane transpor... BP 0.0771236268666795 ATRBOHC//GAD//AT2G21045 GO:0042545 cell wall modification BP 0.0798431160818389 BST1//AT5G16500//AT3G55890//AT4G37295//AtMYB51//CWLP//AT3G28490//ANX1//AT1G11590//SPL3 GO:0030001 metal ion transport BP 0.0824074497662908 AT4G15390//ATFLS5//AT5G60530//AT5G23830//GAD//AT3G62270//ATCNGC9//AT4G22212//ATGLTP1//AT1G01490//HIPP20//ATWRKY65//EDA4//AT2G48130//ATNHX7//AT2G21045//AT2G46690//UGT71C1 GO:0009933 meristem structural organization BP 0.0842734367883115 AT3G55720//CLE44//APC13//ATCLV1//AT2G19970//LSH3 GO:0010039 response to iron ion BP 0.0843876819933992 ATYSL1//ACO2//AtEIL1 GO:2000026 regulation of multicellular organismal d... BP 0.0857130436446319 AtHAM4//SPL2//AHP3//AGL1//AT3G55720//APC13//ACO2//FTM6//ATPIN3//ATCLV1//BRL2//AT2G19970//LSH3//SPL3 GO:0009790 embryo development BP 0.0868421695485368 MEE62//AHUS5//MEE40//MEE59//CTF7//ATS2//UNE15//MEE57//CLE44//MEE51//APC13//ATHB13//ATMST1//emb2411//AteIF3f GO:0052546 cell wall pectin metabolic process BP 0.0876370122119385 AT3G62270//AHA2 GO:0006826 iron ion transport BP 0.0883123249232149 ATFLS5//AT3G62270//ATWRKY65//AT2G48130//AT2G21045//UGT71C1 GO:0009625 response to insect BP 0.0887518613385611 AtMYB28//AT4G02410//AtMYB51//ATMAK3 GO:0000096 sulfur amino acid metabolic process BP 0.0889170916535534 ASN2//AtPPa6//AT3G61540//GGP3//ATSMO1-2//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATMST1//ATSERAT3;1 GO:0048469 cell maturation BP 0.0891004820640235 BST1//ATRBOHC//GAD//AGP3//AT4G22212//ATPIN3//AT2G04680//AT2G21045//UGT71C1 GO:0048764 trichoblast maturation BP 0.0891004820640235 BST1//ATRBOHC//GAD//AGP3//AT4G22212//ATPIN3//AT2G04680//AT2G21045//UGT71C1 GO:0048765 root hair cell differentiation BP 0.0891004820640235 BST1//ATRBOHC//GAD//AGP3//AT4G22212//ATPIN3//AT2G04680//AT2G21045//UGT71C1 GO:0016226 iron-sulfur cluster assembly BP 0.0905274744461281 AT2G33180//AT5G52960//ATCNFU2//MEE40//ATS2 GO:0031163 metallo-sulfur cluster assembly BP 0.0905274744461281 AT2G33180//AT5G52960//ATCNFU2//MEE40//ATS2 GO:0048532 anatomical structure arrangement BP 0.0924554303463933 AT3G55720//CLE44//APC13//ATCLV1//AT2G19970//LSH3 GO:0006820 anion transport BP 0.0938589117287482 AAP4//ATFLS5//ATRBOHC//GAD//AT3G62270//ATVDAC5//AHA2//AT4G11670//AT3G27870//ATSERAT2;1//ATWRKY65//AT1G68710//AT2G48130//ATWRKY17//ATBCA4//AATL2//AT2G21045//UGT71C1 GO:0048638 regulation of developmental growth BP 0.0953481639555654 AT3G55720//UBC19//ANX1//ATPIN3//BRL2//AT2G19970//LSH3 GO:0072528 pyrimidine-containing compound biosynthe... BP 0.09539518874718 ATTMPK.1//DHOASE//NDPK3//AT4G02120//AtDJ1A GO:0097305 response to alcohol BP 0.0958619212673307 AT1G73480//MAP1D//ASG1//AT5G57340//MAKR6//AT5G47390//MARD1//AHUS5//AT4G37295//AIRP1//AtMYB51//AT1G67050//AT1G56220//ATGID1A//AT2G41820//BRL2//AT2G26110//SPL3 GO:0031537 regulation of anthocyanin metabolic proc... BP 0.0997195001018643 AHP3//PAP3 GO:0071248 cellular response to metal ion BP 0.0997195001018643 ACO2//AtEIL1 GO:0006089 lactate metabolic process BP 0.100628507268901 AT5G65750//ATNUDX27//ATBCA4//AT2G20270 GO:0009438 methylglyoxal metabolic process BP 0.100628507268901 AT5G65750//ATNUDX27//ATBCA4//AT2G20270 GO:0019243 methylglyoxal catabolic process to D-lac... BP 0.100628507268901 AT5G65750//ATNUDX27//ATBCA4//AT2G20270 GO:0042182 ketone catabolic process BP 0.100628507268901 AT5G65750//ATNUDX27//ATBCA4//AT2G20270 GO:0046185 aldehyde catabolic process BP 0.100628507268901 AT5G65750//ATNUDX27//ATBCA4//AT2G20270 GO:0051596 methylglyoxal catabolic process BP 0.100628507268901 AT5G65750//ATNUDX27//ATBCA4//AT2G20270 GO:0050793 regulation of developmental process BP 0.102465185447023 AtHAM4//SPL2//AHP3//AGL1//AT3G55720//UBC19//ANX1//APC13//ACO2//FTM6//ATPIN3//ATCLV1//AGL3//BRL2//AT2G19970//LSH3//SPL3 GO:0044550 secondary metabolite biosynthetic proces... BP 0.102699333745773 AtMYB28//ATFRO8//AtPPa6//AT4G30020//GT72B1//AtMYB51//CCOAMT//ACO2//ATMST1//BGLU46 GO:0009812 flavonoid metabolic process BP 0.103063975371935 AT4G16770//ATFLS5//AHP3//GT72B1//AT3G18280//AT1G16310//AT2G21560//PAP3 GO:0009664 plant-type cell wall organization BP 0.105069711394044 BST1//AT5G16500//AT3G62270//AT3G55890//AT4G37295//AHA2//AT3G28490//ANX1//SPL3 GO:0071705 nitrogen compound transport BP 0.106550043781705 AT5G14940//AAP4//ATFLS5//ATYSL3//GAD//AT3G62270//AHA2//ATYSL1//AT4G11670//ATPUP15//AT3G01350//ATSERAT2;1//ATWRKY65//AT2G48130//ATWRKY17//ATBCA4//AtPTR6//AATL2//AT2G21045//UGT71C1 GO:0009793 embryo development ending in seed dorman... BP 0.111551442034148 MEE62//AHUS5//MEE40//MEE59//ATS2//UNE15//MEE57//CLE44//MEE51//APC13//ATHB13//ATMST1//emb2411 GO:0021700 developmental maturation BP 0.111884332978678 BST1//ATRBOHC//GAD//AGP3//AT4G22212//ATPIN3//AT2G04680//AT2G21045//UGT71C1 GO:0051239 regulation of multicellular organismal p... BP 0.11210061648776 AtHAM4//SPL2//AHP3//AGL1//AT3G55720//APC13//ACO2//FTM6//ATPIN3//ATCLV1//BRL2//AT2G19970//LSH3//SPL3 GO:0016143 S-glycoside metabolic process BP 0.115358695763915 AtMYB28//ATFRO8//AtPPa6//GGP3//AT4G30020//AtMYB51//ATMST1 GO:0019757 glycosinolate metabolic process BP 0.115358695763915 AtMYB28//ATFRO8//AtPPa6//GGP3//AT4G30020//AtMYB51//ATMST1 GO:0019760 glucosinolate metabolic process BP 0.115358695763915 AtMYB28//ATFRO8//AtPPa6//GGP3//AT4G30020//AtMYB51//ATMST1 GO:0006790 sulfur compound metabolic process BP 0.116057092542693 HINT4//ASN2//AtMYB28//ATFRO8//AtPPa6//AT3G61540//GGP3//AT4G30020//ATSMO1-2//AtMYB51//AtDJ1A//AT1G67950//AT1G68260//ATSERAT2;1//ACO2//ATMST1//ATSERAT3;1 GO:0009740 gibberellic acid mediated signaling path... BP 0.116124299340015 ATGID1A//AGL67//PAP3 GO:0009944 polarity specification of adaxial/abaxia... BP 0.116124299340015 AT3G55720//AT2G19970//LSH3 GO:0010476 gibberellin mediated signaling pathway BP 0.116124299340015 ATGID1A//AGL67//PAP3 GO:0009719 response to endogenous stimulus BP 0.117086244724389 AT1G73480//MAP1D//ASG1//AtMYB28//AT5G57340//FQR1//MAKR6//ATRBOHC//AT5G47390//AHP3//AtPPa6//MARD1//AHUS5//AT4G37295//AT4G30390//AT4G30020//IAA11//AIRP1//RHA1B//GASA2//AtMYB51//AT1G67050//AT1G56220//AT3G29410//GASA5//ATGID1A//AT2G41820//ACO2//ATERF-8//AtMYB47//AGL67//ATPIN3//ATWRKY17//ATERF15//PAP3//BRL2//AtEIL1//AT2G46690//AT2G26110//SPL3