GOID TERM ONTOLOGY pValue Genes GO:0006598 polyamine catabolic process BP 0.00309573348047772 CCoAOMT1//AT3G13650//AGP12 GO:0009698 phenylpropanoid metabolic process BP 0.00513034069091116 ATTT12//CCoAOMT1//AT3G13650//AGP12//4CL2 GO:0009699 phenylpropanoid biosynthetic process BP 0.00840842879187223 ATTT12//CCoAOMT1//AT3G13650//4CL2 GO:0006595 polyamine metabolic process BP 0.00916225903549303 CCoAOMT1//AT3G13650//AGP12 GO:0042398 cellular modified amino acid biosyntheti... BP 0.0120820141849511 CCoAOMT1//AT3G13650//AGP12 GO:0022603 regulation of anatomical structure morph... BP 0.0306733498508439 UBC30//AtYUC4//ATFTA GO:0006575 cellular modified amino acid metabolic p... BP 0.0328328845397047 CCoAOMT1//AT3G13650//AGP12 GO:0007264 small GTPase mediated signal transductio... BP 0.0362173790419184 AtRABA1f//ATRAN3//ARLA1A GO:0009742 brassinosteroid mediated signaling pathw... BP 0.0368279456889629 BIL4//ATBS1 GO:0043401 steroid hormone mediated signaling pathw... BP 0.0368279456889629 BIL4//ATBS1 GO:0048545 response to steroid hormone BP 0.0368279456889629 BIL4//ATBS1 GO:0071367 cellular response to brassinosteroid sti... BP 0.0368279456889629 BIL4//ATBS1 GO:0071383 cellular response to steroid hormone sti... BP 0.0368279456889629 BIL4//ATBS1 GO:0009310 amine catabolic process BP 0.0500911385642959 CCoAOMT1//AT3G13650//AGP12 GO:0042402 cellular biogenic amine catabolic proces... BP 0.0500911385642959 CCoAOMT1//AT3G13650//AGP12 GO:0007154 cell communication BP 0.0501024979298753 RALFL33//AT1G56540//ATPP7//ATFLS5//AtRABA1f//ATRAN3//ARLA1A//ATCSLA09//AT5G02430//BIL4//ATFTA//AT4G31240//ATBPM4//ATBS1//AT1G65850//AtPPsPase1//RCI3//AT2G17650//AT2G34810 GO:0019344 cysteine biosynthetic process BP 0.0526043666985299 CCoAOMT1//AT1G42960//AGP21//ELP GO:0006534 cysteine metabolic process BP 0.0546866662812231 CCoAOMT1//AT1G42960//AGP21//ELP GO:0009605 response to external stimulus BP 0.0569205702280038 AT1G25275//ATU2AF65A//ATFLS5//ARLA1A//ATPA2//ATCSLA09//AT4G31240//APG8A//4CL2//ACP//ATBPM4//AT1G68300//AtPPsPase1//ELP//RCI3//MAP2A//AT2G34810//AT2G32730 GO:0009070 serine family amino acid biosynthetic pr... BP 0.062322758230625 CCoAOMT1//AT1G42960//AGP21//ELP GO:0031668 cellular response to extracellular stimu... BP 0.0628464678683079 ATFLS5//AT4G31240//ATBPM4//AtPPsPase1//RCI3 GO:0071496 cellular response to external stimulus BP 0.0628464678683079 ATFLS5//AT4G31240//ATBPM4//AtPPsPase1//RCI3 GO:0000097 sulfur amino acid biosynthetic process BP 0.0637751686129059 CCoAOMT1//AT1G42960//AGP21//ELP//AT2G05830 GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 0.0646264072285318 UBC30//ATGSTU24//AT2G32730 GO:0009308 amine metabolic process BP 0.0692942681503102 ARLA1A//CCoAOMT1//AT3G13650//AGP12 GO:0009991 response to extracellular stimulus BP 0.073488350197831 ATFLS5//AT4G31240//ATBPM4//AtPPsPase1//RCI3 GO:0007127 meiosis I BP 0.0746715284048145 ARLA1A//ARLIM15 GO:0007131 reciprocal meiotic recombination BP 0.0746715284048145 ARLA1A//ARLIM15 GO:0009805 coumarin biosynthetic process BP 0.0746715284048145 CCoAOMT1//4CL2 GO:0035825 reciprocal DNA recombination BP 0.0746715284048145 ARLA1A//ARLIM15 GO:0009804 coumarin metabolic process BP 0.0773304409820036 CCoAOMT1//4CL2 GO:0006475 internal protein amino acid acetylation BP 0.0883783772488602 972_ GO:0016573 histone acetylation BP 0.0883783772488602 972_ GO:0018393 internal peptidyl-lysine acetylation BP 0.0883783772488602 972_ GO:0018394 peptidyl-lysine acetylation BP 0.0883783772488602 972_ GO:0048598 embryonic morphogenesis BP 0.0883783772488602 230_ GO:2000024 regulation of leaf development BP 0.0883783772488602 389_ GO:0000096 sulfur amino acid metabolic process BP 0.0917547832200459 CCoAOMT1//AT1G42960//AGP21//ELP//AT2G05830 GO:0022604 regulation of cell morphogenesis BP 0.0938806753138393 UBC30//ATFTA GO:0048829 root cap development BP 0.0967789017335123 133_ GO:0051716 cellular response to stimulus BP 0.102196360943188 AT1G56540//ATBZIP9//ATPP7//ATFLS5//AtRABA1f//ATRAN3//ARLA1A//ATCSLA09//AT5G02430//BIL4//ATFTA//AT4G31240//ARLIM15//ACP//ATBPM4//ATBS1//AT1G65850//AtPPsPase1//RCI3//AT2G17650//AT2G05830//AT2G34810 GO:0009691 cytokinin biosynthetic process BP 0.105102768016778 579_ GO:1990542 mitochondrial transmembrane transport BP 0.105102768016778 025_ GO:0044550 secondary metabolite biosynthetic proces... BP 0.105325301663585 ATTT12//CCoAOMT1//AT3G13650//4CL2 GO:0009267 cellular response to starvation BP 0.108282097095004 ATFLS5//AT4G31240//AtPPsPase1//RCI3 GO:0006950 response to stress BP 0.110739834666392 AT1G25275//AT1G56540//ATU2AF65A//ATPP7//ATFLS5//UBC30//ARLA1A//ATSK13//ATPA2//ATCSLA09//ATFTA//CCoAOMT1//AT4G31240//ATQC//APG8A//AT3G13650//ARLIM15//4CL2//ACP//ATBPM4//AT1G65850//AtPPsPase1//ATFBP7//ATGSTU24//RCI3//AT2G05830//MAP2A//AT2G34810//AT2G32730 GO:0009069 serine family amino acid metabolic proce... BP 0.111276378767346 CCoAOMT1//AT1G42960//AGP21//ELP GO:0042176 regulation of protein catabolic process BP 0.113350668772383 543_ GO:0051259 protein oligomerization BP 0.113350668772383 369_ GO:0071732 cellular response to nitric oxide BP 0.113350668772383 033_ GO:0006333 chromatin assembly or disassembly BP 0.114330410090013 HMGB5//INO GO:0042594 response to starvation BP 0.11737548193803 ATFLS5//AT4G31240//AtPPsPase1//RCI3 GO:0006576 cellular biogenic amine metabolic proces... BP 0.11798226440174 CCoAOMT1//AT3G13650//AGP12 GO:1903046 meiotic cell cycle process BP 0.12036860982757 ARLA1A//ARLIM15 GO:0010229 inflorescence development BP 0.121523290477174 389_ GO:0071483 cellular response to blue light BP 0.121523290477174 306_ GO:0071731 response to nitric oxide BP 0.121523290477174 033_ GO:0031669 cellular response to nutrient levels BP 0.122044588858125 ATFLS5//AT4G31240//AtPPsPase1//RCI3 GO:0010167 response to nitrate BP 0.124020108889811 ATFLS5//NRT1.8//RCI3 GO:0019374 galactolipid metabolic process BP 0.126484409893265 AT4G31240//AtPPsPase1 GO:0019375 galactolipid biosynthetic process BP 0.126484409893265 AT4G31240//AtPPsPase1 GO:0010383 cell wall polysaccharide metabolic proce... BP 0.12810721675045 AT5G51500//AT3G05900//ATMYB63 GO:1901701 cellular response to oxygen-containing c... BP 0.130854804036418 ATBZIP9//BIL4//ATFTA//ATBPM4//ATBS1//AT2G17650//AT2G05830//AT2G34810 GO:0044106 cellular amine metabolic process BP 0.134327488687552 CCoAOMT1//AT3G13650//AGP12 GO:1901565 organonitrogen compound catabolic proces... BP 0.134878610195207 NOL//CCoAOMT1//AT3G13650//AGP12 GO:1902170 cellular response to reactive nitrogen s... BP 0.137645411986105 033_ GO:0031667 response to nutrient levels BP 0.139829904621949 ATFLS5//AT4G31240//AtPPsPase1//RCI3 GO:0050896 response to stimulus BP 0.144071117921607 AT1G25275//AT1G56540//ATU2AF65A//ATBZIP9//AGP1//ATPP7//ATFLS5//AtRABA1f//UBC30//ATRAN3//ARLA1A//ATSK13//ATPA2//ATCSLA09//AT5G02430//BIL4//ATFTA//ATTT12//CCoAOMT1//AT4G31240//ATQC//APG8A//NRT1.8//AT3G13650//ARLIM15//4CL2//ACP//ATBPM4//ATBS1//AT1G68300//AT1G65850//AtPPsPase1//ATFBP7//ATGSTU24//GLYI4//ATMYB63//ELP//RCI3//AT2G17650//AT2G05830//MAP2A//AT2G34810//AT2G32730 GO:0009247 glycolipid biosynthetic process BP 0.145250151558148 AT4G31240//AtPPsPase1 GO:0010304 PSII associated light-harvesting complex... BP 0.14559625425108 812_ GO:0071472 cellular response to salt stress BP 0.14559625425108 341_ GO:0006473 protein acetylation BP 0.15347450249429 972_ GO:0009686 gibberellin biosynthetic process BP 0.15347450249429 589_ GO:0009788 negative regulation of abscisic acid-act... BP 0.15347450249429 464_ GO:0016102 diterpenoid biosynthetic process BP 0.15347450249429 589_ GO:1901420 negative regulation of response to alcoh... BP 0.15347450249429 464_ GO:0009741 response to brassinosteroid BP 0.15484053910109 BIL4//ATBS1 GO:0009813 flavonoid biosynthetic process BP 0.155786010132266 ATFLS5//CCoAOMT1//4CL2 GO:0000003 reproduction BP 0.155882071240021 ARLA1A//ACI1//ATTT12//ARLIM15//AtCYS2 GO:0010106 cellular response to iron ion starvation BP 0.158064507007256 ATFLS5//RCI3 GO:0010162 seed dormancy process BP 0.158064507007256 ATTT12//AtCYS2 GO:0022611 dormancy process BP 0.158064507007256 ATTT12//AtCYS2 GO:0009685 gibberellin metabolic process BP 0.161280813021872 589_ GO:0016101 diterpenoid metabolic process BP 0.161280813021872 589_ GO:0052541 plant-type cell wall cellulose metabolic... BP 0.161280813021872 736_ GO:0071281 cellular response to iron ion BP 0.161280813021872 033_ GO:0009292 genetic transfer BP 0.169015836265251 892_ GO:0009294 DNA mediated transformation BP 0.169015836265251 892_ GO:0009911 positive regulation of flower developmen... BP 0.169015836265251 389_ GO:0071470 cellular response to osmotic stress BP 0.169015836265251 341_ GO:0009963 positive regulation of flavonoid biosynt... BP 0.171082729267545 CCoAOMT1//4CL2 GO:0006664 glycolipid metabolic process BP 0.174365429304413 AT4G31240//AtPPsPase1 GO:0071555 cell wall organization BP 0.175423078163304 AT5G51490//AT5G51500//AT3G13674//AT3G05900//ELP GO:0043248 proteasome assembly BP 0.178235474616518 UBC30//ATGSTU24//AT2G32730 GO:0051788 response to misfolded protein BP 0.178235474616518 UBC30//ATGSTU24//AT2G32730 GO:0006826 iron ion transport BP 0.180961291000003 ATFLS5//RCI3 GO:0007126 meiotic nuclear division BP 0.180961291000003 ARLA1A//ARLIM15 GO:0051607 defense response to virus BP 0.180961291000003 ARLA1A//ACP GO:0071669 plant-type cell wall organization or bio... BP 0.181894810472954 AT5G51500//AT3G13674//AT3G05900//ATMYB63 GO:0009062 fatty acid catabolic process BP 0.182830223997506 ATGSTU24//AtCYS2//AT2G45500