GOID TERM ONTOLOGY pValue Genes GO:0052546 cell wall pectin metabolic process BP 0.00111142008073207 AT1G66180//UGD2//ATKDSA2//ATNRT1 GO:0010393 galacturonan metabolic process BP 0.00199001679362154 AT1G66180//UGD2//ATKDSA2//ATNRT1 GO:0045488 pectin metabolic process BP 0.00199001679362154 AT1G66180//UGD2//ATKDSA2//ATNRT1 GO:0009965 leaf morphogenesis BP 0.00223578438369215 TCP5//LOP1//CRR1//AT4G32340//ARF5//ANAC031//CLF GO:0031048 chromatin silencing by small RNA BP 0.0054095202789583 KAC2//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0006346 methylation-dependent chromatin silencin... BP 0.00682107287068338 ATSAHH1//ATINO80//ARF5//AT1G63640//AT2G07170 GO:0048366 leaf development BP 0.00761536552312093 TCP5//LOP1//CRR1//AT4G32340//ARF5//ANAC031//AT2G31690//ARF10//CLF GO:0031540 regulation of anthocyanin biosynthetic p... BP 0.0099078581537902 AT5G38320//ARF10 GO:0006342 chromatin silencing BP 0.0108993481170694 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0045814 negative regulation of gene expression, ... BP 0.0115029214967661 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0016458 gene silencing BP 0.0116145572632746 ATSAHH1//KAC2//ROS3//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170//CLF GO:0007033 vacuole organization BP 0.012555498551992 emb2448//UGD2//AT1G53210 GO:0010629 negative regulation of gene expression BP 0.0187426391393287 ATSAHH1//KAC2//ROS3//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170//CLF GO:0048588 developmental cell growth BP 0.0194085443833567 ATSAHH1//ACT7//AT4G39130//UGD2//AIMP//AT3G03080//ATKDSA2//AT2G22180//ELP GO:0010558 negative regulation of macromolecule bio... BP 0.0216472882706257 ATSAHH1//KAC2//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:2000113 negative regulation of cellular macromol... BP 0.0216472882706257 ATSAHH1//KAC2//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0040029 regulation of gene expression, epigeneti... BP 0.0228333629549563 ATSAHH1//KAC2//ROS3//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170//CLF GO:0009664 plant-type cell wall organization BP 0.0243297201942816 AT5G52650//AT4G39130//AT1G66180//UGD2//AT3G03080//ATKDSA2//AT2G22180//ATNRT1 GO:0031327 negative regulation of cellular biosynth... BP 0.0243297201942816 ATSAHH1//KAC2//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0009890 negative regulation of biosynthetic proc... BP 0.0252736351571205 ATSAHH1//KAC2//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0015988 energy coupled proton transmembrane tran... BP 0.026678702066041 emb2448//AT4G02620 GO:0015991 ATP hydrolysis coupled proton transport BP 0.026678702066041 emb2448//AT4G02620 GO:0031047 gene silencing by RNA BP 0.0269215932027667 KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170//CLF GO:0010305 leaf vascular tissue pattern formation BP 0.0292428300841418 LOP1//ARF5 GO:0010605 negative regulation of macromolecule met... BP 0.030286420930065 ATSAHH1//KAC2//ROS3//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170//CLF GO:0031537 regulation of anthocyanin metabolic proc... BP 0.0319010458654273 AT5G38320//ARF10 GO:0007030 Golgi organization BP 0.0359053905387574 ATSAHH1//EYE//emb2448//UGD2//AT1G53210 GO:0071669 plant-type cell wall organization or bio... BP 0.037368020045259 AT5G52650//AT4G39130//emb2448//AT1G66180//UGD2//AT3G03080//ATKDSA2//AT2G22180//ATNRT1 GO:0052541 plant-type cell wall cellulose metabolic... BP 0.037488598188321 AT1G66180//ATNRT1 GO:0031324 negative regulation of cellular metaboli... BP 0.0433272566484134 ATSAHH1//KAC2//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0006259 DNA metabolic process BP 0.0434754379416242 ATRPA70D//ROS3//ATPRD2//ATINO80//AT4G05310//AT3G01410//ATIPT1//AT1G63640//DWA2//AT2G07170//CLF GO:0048767 root hair elongation BP 0.0448219237365318 ATSAHH1//ACT7//UGD2//AIMP//ELP GO:0010016 shoot system morphogenesis BP 0.0461523551441639 TCP5//LOP1//CRR1//EYE//AT4G32340//ARF5//ANAC031//CLF GO:0045229 external encapsulating structure organiz... BP 0.0491572243846437 AT5G52650//AT4G39130//ARF5//AT1G66850//AT1G66180//UGD2//AT3G03080//ATKDSA2//AT2G22180//ATNRT1//ELP GO:0010256 endomembrane system organization BP 0.0491745436358097 ATSAHH1//EYE//emb2448//UGD2//AT1G53210 GO:0045892 negative regulation of transcription, DN... BP 0.0491879882007683 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0051253 negative regulation of RNA metabolic pro... BP 0.0491879882007683 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.0491879882007683 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:1903507 negative regulation of nucleic acid-temp... BP 0.0491879882007683 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0009887 organ morphogenesis BP 0.0499984920947284 TCP5//LOP1//CRR1//AT4G32340//ARF5//AT3G01410//ANAC031//AT1G63640//CLF GO:0048827 phyllome development BP 0.0513128223137478 TCP5//LOP1//CRR1//OVA1//AT4G32340//ARF5//AT3G01410//ANAC031//AT1G15330//AT2G31690//ARF10//CLF GO:0045934 negative regulation of nucleobase-contai... BP 0.0526067354270683 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:1903046 meiotic cell cycle process BP 0.0528788763364299 KAC2//ATPRD2//AT3G01410//ATIPT1 GO:0080147 root hair cell development BP 0.0537688041350201 ATSAHH1//ACT7//UGD2//AIMP//ELP GO:0051172 negative regulation of nitrogen compound... BP 0.055266950709198 ATSAHH1//KAC2//ATINO80//ARF5//AT3G01410//AT1G63640//AT2G07170 GO:0016049 cell growth BP 0.0553265263930382 ATSAHH1//LOP1//EYE//ACT7//AT4G39130//UGD2//AIMP//AT3G03080//ATKDSA2//AT2G22180//ELP GO:0009892 negative regulation of metabolic process BP 0.0559096956865738 ATSAHH1//KAC2//ROS3//ATINO80//AT3G49100//ARF5//AT3G01410//AT1G63640//AT2G07170//CLF GO:0009616 virus induced gene silencing BP 0.0586630352361144 ATINO80//AT1G63640//AT2G01820 GO:0052018 modulation by symbiont of RNA levels in ... BP 0.0586630352361144 ATINO80//AT1G63640//AT2G01820 GO:0052249 modulation of RNA levels in other organi... BP 0.0586630352361144 ATINO80//AT1G63640//AT2G01820 GO:0009962 regulation of flavonoid biosynthetic pro... BP 0.0628421287033626 AT5G38320//AT1G18740//ARF10 GO:0098586 cellular response to virus BP 0.0628421287033626 ATINO80//AT1G63640//AT2G01820 GO:1902600 hydrogen ion transmembrane transport BP 0.0630688621269798 emb2448//AT4G02620 GO:0016556 mRNA modification BP 0.0649823303958717 TCP5//CRR1//AT3G14330 GO:0008033 tRNA processing BP 0.0665890227207197 AT4G38890//ATIPT1 GO:0071555 cell wall organization BP 0.0669312862834102 AT5G52650//AT4G39130//ARF5//AT1G66180//UGD2//AT3G03080//ATKDSA2//AT2G22180//ATNRT1//ELP GO:0035821 modification of morphology or physiology... BP 0.069362346061468 ATINO80//AT1G63640//AT2G01820 GO:0044003 modification by symbiont of host morphol... BP 0.069362346061468 ATINO80//AT1G63640//AT2G01820 GO:0051817 modification of morphology or physiology... BP 0.069362346061468 ATINO80//AT1G63640//AT2G01820 GO:0051604 protein maturation BP 0.0738190119638041 ROS3//ATSTE24 GO:0051701 interaction with host BP 0.0761760827505385 ATINO80//AT1G63640//AT2G01820 GO:0007126 meiotic nuclear division BP 0.0769005042586675 KAC2//ATPRD2//AT3G01410//ATIPT1 GO:0040007 growth BP 0.0819134998432708 ATSAHH1//LOP1//EYE//ACT7//AT4G39130//UGD2//AIMP//AT3G03080//ATIPT1//ATKDSA2//AT2G22180//ELP//ARF10 GO:0010608 posttranscriptional regulation of gene e... BP 0.0879332228496423 ATSAHH1//ATINO80//AT3G49100//ARF5//AT1G63640 GO:0006818 hydrogen transport BP 0.0881573818172088 emb2448//AT4G02620//AT3G19850 GO:0015992 proton transport BP 0.0881573818172088 emb2448//AT4G02620//AT3G19850 GO:0009718 anthocyanin-containing compound biosynth... BP 0.0889778145281313 AT5G38320//ARF10 GO:0060560 developmental growth involved in morphog... BP 0.0919382521382451 ATSAHH1//ACT7//AT4G39130//UGD2//AIMP//AT3G03080//ATKDSA2//AT2G22180//ELP GO:0048469 cell maturation BP 0.0939296331111415 ATSAHH1//ACT7//ARF5//UGD2//AIMP//ELP GO:0048764 trichoblast maturation BP 0.0939296331111415 ATSAHH1//ACT7//ARF5//UGD2//AIMP//ELP GO:0048765 root hair cell differentiation BP 0.0939296331111415 ATSAHH1//ACT7//ARF5//UGD2//AIMP//ELP GO:0016441 posttranscriptional gene silencing BP 0.0954799827532743 ATSAHH1//ATINO80//ARF5//AT1G63640 GO:0007131 reciprocal meiotic recombination BP 0.0957040191146902 ATPRD2//AT3G01410//ATIPT1 GO:0035825 reciprocal DNA recombination BP 0.0957040191146902 ATPRD2//AT3G01410//ATIPT1 GO:0007127 meiosis I BP 0.098276780298314 ATPRD2//AT3G01410//ATIPT1 GO:0071554 cell wall organization or biogenesis BP 0.0984700900704109 AT5G52650//AT4G39130//emb2448//ARF5//AT1G33440//AT1G66180//UGD2//AT3G03080//ATKDSA2//AT2G22180//ATNRT1//ELP//ATDOF2.4 GO:0044403 symbiosis, encompassing mutualism throug... BP 0.100877458618601 ATINO80//AT1G63640//AT2G01820 GO:0048513 organ development BP 0.103327537735989 ATSAHH1//TCP5//LOP1//CRR1//EYE//ACT7//OVA1//AT4G32340//ARF5//UGD2//AIMP//AT3G01410//LPR2//ANAC031//AT1G63640//AT1G15330//AT2G31690//ELP//ARF10//CLF GO:0048868 pollen tube development BP 0.105859438802584 AT4G39130//AT3G03080//AT1G15330//ATKDSA2//AT2G22180 GO:0044419 interspecies interaction between organis... BP 0.106160886664091 ATINO80//AT1G63640//AT2G01820 GO:0048468 cell development BP 0.106886261433728 ATSAHH1//ACT7//AT4G39130//ARF5//UGD2//AIMP//AT3G03080//ATKDSA2//AT2G22180//ELP GO:0021700 developmental maturation BP 0.108379154714086 ATSAHH1//ACT7//ARF5//UGD2//AIMP//ELP GO:0048367 shoot system development BP 0.109851248977938 TCP5//LOP1//CRR1//EYE//BAM8//OVA1//AT4G32340//ARF5//AT3G01410//ANAC031//AT1G63640//AT1G15330//AT2G31690//ARF10//AT2G07170//CLF GO:0006399 tRNA metabolic process BP 0.111550915587328 OVA1//AT4G38890//ATIPT1 GO:0045132 meiotic chromosome segregation BP 0.111550915587328 KAC2//ATPRD2//AT3G01410 GO:0044728 DNA methylation or demethylation BP 0.113837179779546 ROS3//ATINO80//AT1G63640//CLF GO:0006304 DNA modification BP 0.115967495842114 ROS3//ATINO80//AT1G63640//CLF GO:0051567 histone H3-K9 methylation BP 0.118115333588242 ARF5//AT1G63640//AT2G07170//CLF GO:0061647 histone H3-K9 modification BP 0.118115333588242 ARF5//AT1G63640//AT2G07170//CLF GO:0051607 defense response to virus BP 0.119828331662711 ATINO80//AT1G63640//AT2G01820 GO:0006553 lysine metabolic process BP 0.121120275630039 402_ GO:0009956 radial pattern formation BP 0.121120275630039 059_ GO:0010100 negative regulation of photomorphogenesi... BP 0.121120275630039 774_ GO:0051651 maintenance of location in cell BP 0.121120275630039 458_ GO:0070972 protein localization to endoplasmic reti... BP 0.121120275630039 295_ GO:0009855 determination of bilateral symmetry BP 0.125469806058672 LOP1//ARF5//ANAC031 GO:0007018 microtubule-based movement BP 0.12591638071274 KAC2//AT1G63640 GO:0009799 specification of symmetry BP 0.128326194898547 LOP1//ARF5//ANAC031 GO:0051276 chromosome organization BP 0.12881732174249 ATSAHH1//KAC2//ATPRD2//ATINO80//ARF5//AT3G01410//AT1G63640//AT1G54230//AT2G07170//CLF GO:0010054 trichoblast differentiation BP 0.132068177364929 ATSAHH1//ACT7//ARF5//UGD2//AIMP//ELP