GOID TERM ONTOLOGY pValue Genes GO:0051239 regulation of multicellular organismal p... BP 3.26668398434237e-06 ESD6//LNG1//GDPDL4//DDM2//TET1//AHK2//MPK16//ATNFXL2//GAUT1//ARGOS//AMP1//ARP1//BAM2//AT3G42660//CRC//MAP65-2//EBS//ATTOPII//AT3G06035//COBL1//CYC2//AT1G72250//ATPS1//LYM1//RKL1//AT1G05440//AT1G49580//IQD31//EMB1968//FLA7//LAX2//ATCDT1A//APC6//AT1G03620//PIF1//TUB7//AGO4//ATPRMT1A//AtGRF1 GO:2000026 regulation of multicellular organismal d... BP 4.27096119760301e-06 ESD6//LNG1//GDPDL4//DDM2//TET1//AHK2//MPK16//ATNFXL2//GAUT1//AMP1//ARP1//BAM2//AT3G42660//CRC//MAP65-2//EBS//ATTOPII//AT3G06035//COBL1//CYC2//AT1G72250//ATPS1//LYM1//RKL1//AT1G05440//AT1G49580//IQD31//EMB1968//FLA7//LAX2//ATCDT1A//APC6//AT1G03620//PIF1//TUB7//AGO4//ATPRMT1A//AtGRF1 GO:0050793 regulation of developmental process BP 1.27601103549637e-05 ESD6//LNG1//GDPDL4//DDM2//TET1//AHK2//MPK16//ATNFXL2//GAUT1//ARGOS//AMP1//ARP1//BAM2//AT3G42660//ANT//ATHB-8//CRC//MAP65-2//EBS//ATTOPII//AtMAD2//AT3G06035//COBL1//CYC2//AT1G72250//ATPS1//LYM1//RKL1//AT1G05440//AT1G49580//IQD31//EMB1968//FLA7//LAX2//ATCDT1A//APC6//AT1G03620//PIF1//TUB7//AGO4//ATPRMT1A//AtGRF1 GO:0016569 covalent chromatin modification BP 1.47508999455518e-05 ESD6//VRN2//AT5G17160//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//MAP65-2//ATFKBP53//AT1G56210//ATTOPII//IDM1//AtMAD2//COBL1//CYC2//AT1G72250//ATPS1//RIP4//LYM1//ATPCNA1//AT1G05440//AT1G15940//EMB1968//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0006084 acetyl-CoA metabolic process BP 1.689618675093e-05 FPS2//ACLB-2//AtENODL17//PDH-E1//PIP1;3//LAX3//AT1G50110//IQD31//FLA7//ATCDT1A//AT1G12000//AtXYP2 GO:0006637 acyl-CoA metabolic process BP 1.689618675093e-05 FPS2//ACLB-2//AtENODL17//PDH-E1//PIP1;3//LAX3//AT1G50110//IQD31//FLA7//ATCDT1A//AT1G12000//AtXYP2 GO:0035383 thioester metabolic process BP 1.689618675093e-05 FPS2//ACLB-2//AtENODL17//PDH-E1//PIP1;3//LAX3//AT1G50110//IQD31//FLA7//ATCDT1A//AT1G12000//AtXYP2 GO:0006325 chromatin organization BP 4.36268029822181e-05 ESD6//VRN2//AT5G17160//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//MAP65-2//ATFKBP53//EBS//AT1G56210//ATTOPII//IDM1//AtMAD2//AT3G09480//COBL1//CYC2//AT1G72250//ATPS1//RIP4//AT1G06760//LYM1//ATPCNA1//AT1G05440//HTB1//AT1G15940//EMB1968//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0016570 histone modification BP 4.56824419588071e-05 ESD6//VRN2//AT5G17160//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//ATFKBP53//AT1G56210//ATTOPII//IDM1//AtMAD2//COBL1//CYC2//AT1G72250//ATPS1//LYM1//ATPCNA1//AT1G05440//EMB1968//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0016568 chromatin modification BP 4.9304549009352e-05 ESD6//VRN2//AT5G17160//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//MAP65-2//ATFKBP53//AT1G56210//ATTOPII//IDM1//AtMAD2//COBL1//CYC2//AT1G72250//ATPS1//RIP4//LYM1//ATPCNA1//AT1G05440//AT1G15940//EMB1968//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0006275 regulation of DNA replication BP 0.000348303428380127 AT5G48310//AT5G01910//AT3G51280//AT3G42660//MAP65-2//ATTOPII//CYC2//ATPS1//ATPCNA1//AT1G05440//ATPOT1//ATCDT1A//APC6//AGO4 GO:0051276 chromosome organization BP 0.000434980085714864 ESD6//VRN2//AT5G17160//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//ATHB-8//MAP65-2//ATFKBP53//EBS//AT1G56210//ATTOPII//IDM1//AtMAD2//AT3G09480//COBL1//CYC2//AT1G72250//ATPS1//RIP4//AT1G06760//LYM1//ATPCNA1//AT1G05440//HTB1//AT1G15940//EMB1968//ATPOT1//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0048507 meristem development BP 0.000443673158476184 ESD6//LNG1//GDPDL4//TET1//AHK2//MPK16//GAUT1//AMP1//BAM2//ANT//ATHB-8//CRC//AT3G06035//COBL1//ANAC030//RKL1//AT1G63520//AT1G49580//IQD31//AT1G79420//FLA7//LAX2//AT1G03620//TUB7//AGO4 GO:1901987 regulation of cell cycle phase transitio... BP 0.000457722456510967 AT5G48310//AT5G01910//AT3G42660//MAP65-2//AtMAD2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:1901990 regulation of mitotic cell cycle phase t... BP 0.000457722456510967 AT5G48310//AT5G01910//AT3G42660//MAP65-2//AtMAD2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0010075 regulation of meristem growth BP 0.000487292267435441 LNG1//GDPDL4//TET1//MPK16//GAUT1//BAM2//AT3G06035//RKL1//AT1G49580//IQD31//FLA7//LAX2//AT1G03620//TUB7 GO:0035266 meristem growth BP 0.000572907817670739 LNG1//GDPDL4//TET1//MPK16//GAUT1//BAM2//AT3G06035//RKL1//AT1G49580//IQD31//FLA7//LAX2//AT1G03620//TUB7 GO:0006790 sulfur compound metabolic process BP 0.000595369051199172 APS3//FPS2//ATMAP65-1//ACLB-2//TET1//IMS3//AtENODL17//AT5G13760//AtMYB76//AT3G45160//BASS5//PDH-E1//BCAT4//MAT4//ATGSTF11//PIP1;3//LAX3//AT1G50110//IQD31//FLA7//ATCDT1A//AT1G12000//AtXYP2//UMAMIT12//CYP71A13 GO:0006066 alcohol metabolic process BP 0.000598744375080456 APS3//FPS2//GDPDL4//ACLB-2//AtGDPD2//AtENODL17//ATMIPS3//AT3G63240//AT3G57010//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//EDA17//AT1G30690//FLA7//AtXYP2//AT2G29300 GO:0044770 cell cycle phase transition BP 0.000644094121946627 AT5G48310//AT5G01910//AT3G42660//MAP65-2//AtMAD2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0044772 mitotic cell cycle phase transition BP 0.000644094121946627 AT5G48310//AT5G01910//AT3G42660//MAP65-2//AtMAD2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0006305 DNA alkylation BP 0.000673266662908382 ESD6//DDM2//VPS2.2//AT3G51280//AT3G42660//ANT//ATTOPII//IDM1//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//APC6//AGO4 GO:0006306 DNA methylation BP 0.000673266662908382 ESD6//DDM2//VPS2.2//AT3G51280//AT3G42660//ANT//ATTOPII//IDM1//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//APC6//AGO4 GO:0044728 DNA methylation or demethylation BP 0.000724076620053825 ESD6//DDM2//VPS2.2//AT3G51280//AT3G42660//ANT//ATTOPII//IDM1//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//APC6//AGO4 GO:0048509 regulation of meristem development BP 0.000724076620053825 LNG1//GDPDL4//TET1//AHK2//MPK16//GAUT1//BAM2//AT3G06035//RKL1//AT1G49580//IQD31//FLA7//LAX2//AT1G03620//TUB7 GO:1901615 organic hydroxy compound metabolic proce... BP 0.000754685855694417 APS3//FPS2//AT1G57630//GDPDL4//ACLB-2//AtGDPD2//AtENODL17//ATMIPS3//AT3G63240//AT3G57010//AT3G48640//AtTYDC//AT4G25730//PDH-E1//MAP1B//PIP1;3//LAX3//AT1G05440//SBH2//EDA17//AT1G30690//FLA7//AtXYP2//AT2G29300//CYP71A13 GO:0006304 DNA modification BP 0.000778110755896959 ESD6//DDM2//VPS2.2//AT3G51280//AT3G42660//ANT//ATTOPII//IDM1//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//APC6//AGO4 GO:0007346 regulation of mitotic cell cycle BP 0.00085113738237199 AT5G48310//AT5G01910//AT3G42660//MAP65-2//ATTOPII//AtMAD2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0016126 sterol biosynthetic process BP 0.000856458177092771 APS3//FPS2//ACLB-2//AtENODL17//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//AT1G30690//FLA7//AtXYP2 GO:0016129 phytosteroid biosynthetic process BP 0.000889123034652925 FPS2//ACLB-2//AtENODL17//AT3G57010//PDH-E1//PIP1;3//LAX3//AT1G05440//FLA7//AtXYP2 GO:0070925 organelle assembly BP 0.000899597537142676 AT4G15830//MAP65-2//ATTOPII//RPSAb//CYC2//AT2G16270//APC6//AGO4 GO:0043933 macromolecular complex subunit organizat... BP 0.000934661564449431 ESD6//APS3//VRN2//AT4G15830//AT5G17160//GDPDL4//ATMAP65-1//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//ATHB-8//MAP65-2//ATFKBP53//EBS//ATTOC75-IV//AT1G56210//AT1G33340//ATTOPII//IDM1//AtMAD2//AT3G09480//RPSAb//COBL1//CYC2//AT1G72250//ATPS1//ANAC030//RIP4//AT1G06760//LYM1//ATPCNA1//AT1G05440//HTB1//AT1G15940//IQD31//EMB1968//AT2G16270//ATCDT1A//APC6//AT1G12000//TUB7//AGO4//ATPRMT1A GO:0051052 regulation of DNA metabolic process BP 0.000961209398356936 AT5G48310//AT5G01910//AT3G51280//AT3G42660//MAP65-2//ATTOPII//IDM1//CYC2//ATPS1//ATPCNA1//AT1G05440//ATPOT1//ATCDT1A//APC6//AGO4 GO:0009909 regulation of flower development BP 0.00097203507191999 ESD6//DDM2//AHK2//AMP1//AT3G42660//CRC//MAP65-2//EBS//ATTOPII//COBL1//CYC2//AT1G72250//ATPS1//LYM1//AT1G05440//EMB1968//ATCDT1A//APC6//AGO4//ATPRMT1A GO:0000086 G2/M transition of mitotic cell cycle BP 0.000984558271442302 AT5G48310//AT5G01910//AT3G42660//MAP65-2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0010389 regulation of G2/M transition of mitotic... BP 0.000984558271442302 AT5G48310//AT5G01910//AT3G42660//MAP65-2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0044839 cell cycle G2/M phase transition BP 0.000984558271442302 AT5G48310//AT5G01910//AT3G42660//MAP65-2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:1902749 regulation of cell cycle G2/M phase tran... BP 0.000984558271442302 AT5G48310//AT5G01910//AT3G42660//MAP65-2//CYC2//ATPS1//AT1G05440//ATCDT1A//APC6 GO:0048580 regulation of post-embryonic development BP 0.00100347122788403 ESD6//DDM2//AHK2//AMP1//ARP1//AT3G42660//CRC//MAP65-2//EBS//ATTOPII//COBL1//CYC2//AT1G72250//ATPS1//LYM1//AT1G05440//EMB1968//ATCDT1A//APC6//PIF1//AGO4//ATPRMT1A//AtGRF1 GO:0048638 regulation of developmental growth BP 0.00105441208993104 LNG1//GDPDL4//TET1//MPK16//GAUT1//ARGOS//BAM2//AtMAD2//AT3G06035//RKL1//AT1G49580//IQD31//FLA7//LAX2//APC6//AT1G03620//TUB7 GO:0016128 phytosteroid metabolic process BP 0.00109148898696908 FPS2//ACLB-2//AtENODL17//AT3G57010//PDH-E1//PIP1;3//LAX3//AT1G05440//FLA7//AtXYP2 GO:1903047 mitotic cell cycle process BP 0.001129021781212 AT4G15830//AT4G17000//DDM2//AT5G48310//VPS2.2//AT5G01910//AT3G42660//MAP65-2//ATTOPII//AtMAD2//CYC2//AT1G72250//ATPS1//RIP4//AT1G05440//AT2G16270//ATCDT1A//APC6//AGO4 GO:0016125 sterol metabolic process BP 0.00120203599923422 APS3//FPS2//ACLB-2//AtENODL17//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//AT1G30690//FLA7//AtXYP2 GO:0016571 histone methylation BP 0.00133428779877729 ESD6//VRN2//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//AT1G56210//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0044699 single-organism process BP 0.00133966517059571 ESD6//APS3//VRN2//FPS2//AT4G15830//AT4G17000//AT-EXPR//ZIP4//AT-HSFB4//AT1G58070//AKINBETA1//AT1G57630//AT5G17160//LNG1//AT5G27470//SFP2//HIPP27//ATOPT4//AT5G60150//RANBP1//ATOPT1//GDPDL4//ATMAP65-1//DDM2//ACLB-2//AT5G48900//DIR1//AT5G48310//TET1//AT5G44680//AT5G44400//VPS2.2//ATCRA1//AtGDPD2//ERMO1//UDG4//AT5G38020//AHK2//IMS3//RAD5//MPK16//AT5G17930//GLN1;4//AtENODL17//AT5G13760//ATMIPS3//AT5G07630//AtMYB76//UGT76C2//AT5G05960//ATNFXL2//LAC11//ATRAPTOR1A//AT5G01910//ACI1//AT3G63240//BIL4//MARD1//ATCKX6//GAUT1//ARGOS//ATBZIP61//ARR9//AT3G57010//AMP1//ARP1//ATTRX//AT3G50790//AT3G51280//DIN11//BAM2//AT3G48640//ARR5//AT3G46370//AT3G46490//AT3G45160//AT3G42660//sks9//ANT//ATSEN1//AT4G34600//ATHB-8//AT4G30090//AT4G29610//AT4G29030//CRC//AtTYDC//ATOPT6//MAP65-2//BGAL12//ATGDU2//ATFKBP53//AT4G25730//PIP1;5//EBS//ATMSRB9//ATFAH2//AT4G18030//BASS5//AT4G10390//ATTOC75-IV//ATMSRB6//ALN//AT4G02850//AT1G25530//GALS1//BETA-TIP//AT1G13650//PDH-E1//AT1G56210//CYP96A14P//AT3G11964//BGAL1//ATTOPII//BCAT4//AT3G23770//IDM1//AT3G23090//ATMYB15//AtMAD2//AT3G23550//ASPGB1//MAT4//ATLOX5//AT3G06035//GalAK//WDL1//RPSAb//ATGSTF11//COBL1//AT3G05470//CYC2//AT3G05250//MAP1B//PIP1;3//PHR1//TSA1//LAX3//AT1G72250//ATPS1//ANAC030//AT1G74460//AT2G41820//NRT1.5//ATPER1//ORA59//RIP4//AT1G06720//LYM1//FTM1//AT1G26380//ATPCNA1//RKL1//SIAR1//AT1G05440//NRT1.9//SBH2//AT1G63520//CYP78A8//AT1G49580//AT1G50110//APL2//AT1G15940//AT1G22550//AtGXMT1//IQD31//RLM1//EDA17//EMB1968//AT1G06550//ATGSL07//AT1G79420//ATVPS11//ATPOT1//CYP708A3//AT1G30690//ZIP7//AtHsp90.5//AT2G16270//FLA7//RNS3//LAC5//ATRNR1//LAX2//ATCDT1A//APC6//EIF2//LRX1//AT1G12000//AS2//AT1G03620//AT1G27190//PIF1//AtXYP2//UMAMIT12//ZAT11//AT2G18690//SCY1//AT2G40700//CAC3//NATA1//AT2G28780//AT2G29300//TUB7//AGO4//ROPGAP3//ATNPSN11//AT2G25890//ATPRMT1A//AtGRF1//ATPSK2//ABCG31//CYCP4;1//AT2G45850//ATLMCO4//CYP71A13//DVL11//CYCB1;4 GO:0018193 peptidyl-amino acid modification BP 0.00145938006898972 DDM2//ACLB-2//ATFKBP65//AT5G48310//VPS2.2//AHK2//AT3G51280//AT3G42660//MAP65-2//ATFKBP53//ATTOPII//IDM1//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A//DVL11 GO:0006479 protein methylation BP 0.00171889017787705 ESD6//VRN2//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//AT1G56210//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0008213 protein alkylation BP 0.00171889017787705 ESD6//VRN2//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//AT1G56210//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0006694 steroid biosynthetic process BP 0.00177641785051671 APS3//FPS2//ACLB-2//AtENODL17//AT3G57010//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//AT1G30690//FLA7//AtXYP2 GO:0006260 DNA replication BP 0.00180617347363248 DDM2//AT5G48310//VPS2.2//RAD5//AT5G01910//AT3G51280//AT3G42660//MAP65-2//ATTOPII//AtMAD2//CYC2//ATPS1//ATPCNA1//AT1G05440//EMB1968//ATPOT1//ATRNR1//ATCDT1A//APC6//AGO4 GO:0048831 regulation of shoot system development BP 0.00180617347363248 ESD6//DDM2//AHK2//AMP1//AT3G42660//CRC//MAP65-2//EBS//ATTOPII//COBL1//CYC2//AT1G72250//ATPS1//LYM1//AT1G05440//EMB1968//ATCDT1A//APC6//AGO4//ATPRMT1A GO:0040008 regulation of growth BP 0.00200124919339138 LNG1//GDPDL4//TET1//MPK16//GAUT1//ARGOS//BAM2//AtMAD2//AT3G06035//RKL1//AT1G49580//IQD31//FLA7//LAX2//APC6//AT1G03620//TUB7 GO:0032259 methylation BP 0.00203955207966447 ESD6//VRN2//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//RUXF//MAP65-2//ATFKBP53//AT4G25730//AT1G56210//AT3G11964//ATTOPII//IDM1//AT3G25470//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//EMB1968//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0008283 cell proliferation BP 0.00211479099602105 ATMAP65-1//DDM2//VPS2.2//ARGOS//AT3G51280//AT3G42660//ANT//ATHB-8//MAP65-2//ATTOPII//AtMAD2//ATPS1//ATPCNA1//AT1G05440//APC6//AGO4//ATPSK2 GO:0010073 meristem maintenance BP 0.00223368624460273 LNG1//GDPDL4//TET1//MPK16//GAUT1//BAM2//ANT//AT3G06035//RKL1//AT1G49580//IQD31//AT1G79420//FLA7//LAX2//AT1G03620//TUB7//AGO4 GO:0007051 spindle organization BP 0.00224831961604138 AT4G15830//MAP65-2//ATTOPII//CYC2//AT2G16270//APC6//AGO4 GO:0051225 spindle assembly BP 0.00224831961604138 AT4G15830//MAP65-2//ATTOPII//CYC2//AT2G16270//APC6//AGO4 GO:0042221 response to chemical BP 0.00228977228059449 GH3.3//ESD6//AT4G15830//AT5G11070//AKINBETA1//AT1G57630//AT5G27470//PROPEP3//ATFKBP65//DIR1//ATCRA1//UDG4//AHK2//IMS3//GLN1;4//HSP17.6II//ATMIPS3//AtMYB76//BIL4//MARD1//ARGOS//ATBZIP61//ARR9//ARP1//DIN11//BAM2//AT3G48640//ARR5//ATSEN1//ATHB-8//CRC//AtTYDC//PIP1;5//BASS5//AT4G10390//AT4G02850//AT1G67050//ATTOPII//AT3G16530//IDM1//AT3G23090//ATMYB15//AtMAD2//AT3G23550//CYC2//SAUR28//AT3G05250//PIP1;3//LAX3//AT1G29460//AT1G72730//ATPS1//ANAC030//AT2G41820//NRT1.5//ATPER1//ORA59//FTM1//ATBXL2//AT1G26380//NRT1.9//AT1G15940//AtHsp90.5//LAC5//ATRNR1//AT1G12000//AT2G42900//PIF1//ZAT11//AT2G18690//NATA1//AT2G28780//TUB7//AGO4//AtGRF1//ABCG31//MAKR4//CYP71A13 GO:0016132 brassinosteroid biosynthetic process BP 0.00304606521155804 FPS2//ACLB-2//AtENODL17//AT3G57010//PDH-E1//PIP1;3//LAX3//FLA7//AtXYP2 GO:1901617 organic hydroxy compound biosynthetic pr... BP 0.00313157463226693 APS3//FPS2//AT1G57630//ACLB-2//AtENODL17//ATMIPS3//AT3G57010//AT3G48640//AtTYDC//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//AT1G30690//FLA7//AtXYP2//AT2G29300//CYP71A13 GO:0006732 coenzyme metabolic process BP 0.00317368249558625 FPS2//ACLB-2//AtENODL17//PDH-E1//MAT4//ATGSTF11//PIP1;3//LAX3//AT1G50110//IQD31//FLA7//ATCDT1A//AT1G12000//AtXYP2//CAC3 GO:0051567 histone H3-K9 methylation BP 0.00317368249558625 DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4 GO:0061647 histone H3-K9 modification BP 0.00317368249558625 DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4 GO:2000241 regulation of reproductive process BP 0.00318305279862755 ESD6//DDM2//AHK2//AMP1//AT3G42660//CRC//MAP65-2//EBS//ATTOPII//COBL1//CYC2//AT1G72250//ATPS1//LYM1//AT1G05440//EMB1968//ATCDT1A//APC6//AGO4//ATPRMT1A GO:0043414 macromolecule methylation BP 0.00335967990248957 ESD6//VRN2//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//RUXF//MAP65-2//ATFKBP53//AT4G25730//AT1G56210//AT3G11964//ATTOPII//IDM1//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//EMB1968//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0008202 steroid metabolic process BP 0.00348028906357262 APS3//FPS2//ACLB-2//AtENODL17//AT3G57010//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//AT1G30690//FLA7//AtXYP2 GO:0031669 cellular response to nutrient levels BP 0.00351275098242068 APS3//AKINBETA1//AtGDPD2//DIN11//ALN//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0046165 alcohol biosynthetic process BP 0.00355247781521159 APS3//FPS2//ACLB-2//AtENODL17//ATMIPS3//AT3G57010//PDH-E1//PIP1;3//LAX3//AT1G05440//SBH2//AT1G30690//FLA7//AtXYP2//AT2G29300 GO:0016131 brassinosteroid metabolic process BP 0.00364679930981718 FPS2//ACLB-2//AtENODL17//AT3G57010//PDH-E1//PIP1;3//LAX3//FLA7//AtXYP2 GO:0065008 regulation of biological quality BP 0.0036726481271126 GH3.3//ESD6//FPS2//LNG1//GDPDL4//ACLB-2//AT5G48900//TET1//IMS3//AtENODL17//ATMIPS3//UGT76C2//ATCKX6//AT3G57010//ATTRX//BAM2//ATHB-8//CRC//MAP65-2//PDH-E1//BCAT4//IDM1//AT3G25470//PIP1;3//LAX3//ATPS1//ANAC030//SIAR1//AT1G15940//ATPOT1//FLA7//APC6//AtXYP2//AT2G18690//AGO4//ROPGAP3//AT2G25890 GO:0010817 regulation of hormone levels BP 0.00377027639780781 FPS2//LNG1//ACLB-2//AT5G48900//TET1//IMS3//AtENODL17//UGT76C2//ATCKX6//AT3G57010//BAM2//PDH-E1//BCAT4//PIP1;3//LAX3//FLA7//AtXYP2//AT2G18690//ROPGAP3 GO:0034968 histone lysine methylation BP 0.00395362176358191 DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0042445 hormone metabolic process BP 0.00411041857452998 FPS2//ACLB-2//IMS3//AtENODL17//UGT76C2//ATCKX6//AT3G57010//PDH-E1//BCAT4//PIP1;3//LAX3//FLA7//AtXYP2//AT2G18690 GO:0018022 peptidyl-lysine methylation BP 0.00415318255118467 DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//ATTOPII//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0018205 peptidyl-lysine modification BP 0.00433196755190856 DDM2//ACLB-2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//MAP65-2//ATTOPII//IDM1//CYC2//AT1G72250//ATPS1//ATPCNA1//AT1G05440//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A//DVL11 GO:0044036 cell wall macromolecule metabolic proces... BP 0.00464877779778815 AT1G58070//GDPDL4//AT5G38020//AtENODL17//LAC11//GAUT1//ANT//ATHB-8//ATXTH18//AT3G23090//ANAC030//LYM1//FTM1//AtGXMT1//AT1G30690//ATLMCO4 GO:0031667 response to nutrient levels BP 0.0047936222958883 APS3//AKINBETA1//AtGDPD2//DIN11//ALN//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0005975 carbohydrate metabolic process BP 0.00546843503410811 ZIP4//AT1G58070//LNG1//AT5G27470//GDPDL4//ATMAP65-1//ACLB-2//AtGDPD2//AtENODL17//ATMIPS3//AtMYB76//LAC11//AT3G63240//GAUT1//BAM2//AtGH9B18//ATXTH18//BGAL12//AT4G23820//PIP1;5//GALS1//BGAL1//AT3G13560//AT3G23770//AT3G23090//GalAK//ATGSTF11//AT3G07320//LAX3//AtGH9C2//ANAC030//ATBXL2//APL2//AtGXMT1//ATGSL07//AT1G30690//AT2G40310//ATRNR1//AT1G12000//AT1G11820//TUB7//AGO4//ATLMCO4//AtGH9B8//BGLU33 GO:0010033 response to organic substance BP 0.00557243264591928 GH3.3//ESD6//AT4G15830//AT5G11070//AKINBETA1//AT1G57630//DIR1//ATCRA1//UDG4//AHK2//GLN1;4//AtMYB76//BIL4//MARD1//ARGOS//ATBZIP61//ARR9//ARP1//DIN11//BAM2//AT3G48640//ARR5//ATSEN1//ATHB-8//CRC//PIP1;5//BASS5//AT4G10390//AT4G02850//AT1G67050//ATTOPII//AT3G16530//IDM1//ATMYB15//AtMAD2//AT3G23550//CYC2//SAUR28//AT3G05250//LAX3//AT1G29460//AT1G72730//ATPS1//ANAC030//AT2G41820//NRT1.5//ORA59//FTM1//AT1G26380//AT1G15940//AT2G42900//PIF1//ZAT11//AT2G18690//NATA1//AT2G28780//AGO4//AtGRF1//MAKR4//CYP71A13 GO:1902589 single-organism organelle organization BP 0.00597039260181398 ESD6//VRN2//AT4G15830//AT4G17000//AT5G17160//GDPDL4//ATMAP65-1//DDM2//AT5G48310//VPS2.2//AT3G51280//AT3G42660//ANT//ATHB-8//MAP65-2//ATFKBP53//AT1G56210//ATTOPII//IDM1//AtMAD2//COBL1//AT3G05470//CYC2//AT1G72250//ATPS1//ANAC030//RIP4//LYM1//ATPCNA1//AT1G05440//AT1G15940//IQD31//EMB1968//ATPOT1//AT2G16270//ATCDT1A//APC6//AT1G12000//AGO4//ATPRMT1A GO:0006259 DNA metabolic process BP 0.00640493423228969 ESD6//DDM2//AT5G48310//AT5G44680//VPS2.2//RAD5//AT5G17930//AT5G01910//AT3G51280//AT3G42660//ANT//MAP65-2//ATTOPII//IDM1//AtMAD2//CYC2//PHR1//AT1G72250//ATPS1//ATPCNA1//AT1G05440//AT1G15940//EMB1968//ATPOT1//ATRNR1//ATCDT1A//APC6//AT2G40700//AGO4 GO:0010431 seed maturation BP 0.0064159718205614 ESD6//ATCRA1//MARD1//ARR9//BAM2//ATHB-8//CRC//ATPER1//AT2G25890//AtGRF1 GO:0010393 galacturonan metabolic process BP 0.00642883305047221 GDPDL4//AtENODL17//GAUT1//GALS1//AT1G30690 GO:0045488 pectin metabolic process BP 0.00642883305047221 GDPDL4//AtENODL17//GAUT1//GALS1//AT1G30690 GO:0010162 seed dormancy process BP 0.00650931379286041 ESD6//ATCRA1//MARD1//ARR9//BAM2//CRC//ATPER1//AT2G25890//AtGRF1 GO:0022611 dormancy process BP 0.00650931379286041 ESD6//ATCRA1//MARD1//ARR9//BAM2//CRC//ATPER1//AT2G25890//AtGRF1 GO:0044262 cellular carbohydrate metabolic process BP 0.00657000478957361 ZIP4//AT1G58070//GDPDL4//ATMAP65-1//ACLB-2//AtGDPD2//AtENODL17//ATMIPS3//AtMYB76//LAC11//AT3G63240//GAUT1//ATXTH18//BGAL12//AT3G23090//GalAK//ATGSTF11//ANAC030//APL2//AtGXMT1//ATGSL07//AT1G30690//AGO4//ATLMCO4 GO:0000910 cytokinesis BP 0.00667993465094778 AT4G15830//AT4G17000//ATMAP65-1//DDM2//VPS2.2//MAP65-2//ATTOPII//CYC2//AT1G72250//RIP4//AT1G05440//AT2G16270//APC6//AGO4//ATNPSN11 GO:0009267 cellular response to starvation BP 0.00758109363907796 APS3//AtGDPD2//DIN11//ALN//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0051186 cofactor metabolic process BP 0.00792981726573322 FPS2//ACLB-2//AHK2//AtENODL17//PDH-E1//MAT4//ATGSTF11//PIP1;3//LAX3//AT1G50110//IQD31//FLA7//ATCDT1A//AT1G12000//PIF1//AtXYP2//CAC3 GO:1901700 response to oxygen-containing compound BP 0.00825613829675307 ESD6//AT5G11070//AKINBETA1//AT1G57630//ATFKBP65//DIR1//ATCRA1//UDG4//AHK2//IMS3//GLN1;4//HSP17.6II//ATMIPS3//AtMYB76//BIL4//MARD1//ARR9//ARP1//DIN11//BAM2//AT3G48640//ATSEN1//CRC//AtTYDC//PIP1;5//BASS5//AT4G10390//AT1G67050//AT3G16530//AT3G23090//ATMYB15//SAUR28//PIP1;3//AT1G72730//ANAC030//AT2G41820//NRT1.5//ATPER1//ORA59//FTM1//NRT1.9//AtHsp90.5//AT2G42900//PIF1//ZAT11//AT2G18690//NATA1//AtGRF1//MAKR4//CYP71A13 GO:0031668 cellular response to extracellular stimu... BP 0.00901049945758497 APS3//AKINBETA1//AtGDPD2//DIN11//ALN//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0071496 cellular response to external stimulus BP 0.00901049945758497 APS3//AKINBETA1//AtGDPD2//DIN11//ALN//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0006342 chromatin silencing BP 0.00934341691716311 ESD6//DDM2//AT5G48310//ANT//ATTOPII//CYC2//AT1G72250//ATPS1//RIP4//AT1G05440//AT1G15940//ATCDT1A//APC6//AT1G12000//AGO4 GO:0042594 response to starvation BP 0.00943506161340893 APS3//AtGDPD2//DIN11//ALN//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0010051 xylem and phloem pattern formation BP 0.00956003058581149 TET1//AMP1//ANT//COBL1//RIP4//AT1G79420//LAX2//AS2 GO:0042446 hormone biosynthetic process BP 0.009718042790024 FPS2//ACLB-2//IMS3//AtENODL17//AT3G57010//PDH-E1//BCAT4//PIP1;3//LAX3//FLA7//AtXYP2//AT2G18690 GO:0006826 iron ion transport BP 0.00987957600287575 AHK2//AT3G23090//PIP1;3//NRT1.5//NRT1.9//ZIP7 GO:0016572 histone phosphorylation BP 0.0100370052950366 AT5G17160//VPS2.2//MAP65-2//ATTOPII//AtMAD2//ATCDT1A//AGO4 GO:0045892 negative regulation of transcription, DN... BP 0.0100869709730013 ESD6//DDM2//AT5G48310//AT5G13240//ATNFXL2//ANT//ATTOPII//CYC2//AT1G72250//ATPS1//RIP4//AT1G05440//AT1G15940//ATCDT1A//APC6//AT1G12000//ATOFP7//AGO4