GOID TERM ONTOLOGY pValue Genes GO:0048444 floral organ morphogenesis BP 0.00302507355710498 SMC6A//AT3G42660//ATMSH6//JAG//RGA GO:0048563 post-embryonic organ morphogenesis BP 0.00302507355710498 SMC6A//AT3G42660//ATMSH6//JAG//RGA GO:0030048 actin filament-based movement BP 0.00433007245430548 ATPLC1//ATVIIIA//ATMYO5 GO:0048447 sepal morphogenesis BP 0.00927940321895882 SMC6A//ATMSH6//JAG GO:0048451 petal formation BP 0.00927940321895882 SMC6A//ATMSH6//JAG GO:0048453 sepal formation BP 0.00927940321895882 SMC6A//ATMSH6//JAG GO:0048442 sepal development BP 0.00997006182362256 SMC6A//ATMSH6//JAG GO:0048464 flower calyx development BP 0.00997006182362256 SMC6A//ATMSH6//JAG GO:0048449 floral organ formation BP 0.0107004215648637 SMC6A//AT3G42660//ATMSH6//JAG GO:0009846 pollen germination BP 0.0108702733730718 CLI1//PIP5K5 GO:0048446 petal morphogenesis BP 0.0114391422900027 SMC6A//ATMSH6//JAG GO:0051645 Golgi localization BP 0.0141222756701172 ATPLC1//ATMYO5 GO:0051646 mitochondrion localization BP 0.0141222756701172 ATPLC1//ATMYO5 GO:0060151 peroxisome localization BP 0.0141222756701172 ATPLC1//ATMYO5 GO:0048441 petal development BP 0.0195323268771649 SMC6A//ATMSH6//JAG GO:0048465 corolla development BP 0.0195323268771649 SMC6A//ATMSH6//JAG GO:0048645 organ formation BP 0.0260692691963336 SMC6A//AT3G42660//ATMSH6//JAG GO:0007049 cell cycle BP 0.027713913841803 AT5G59740//SMC6A//CYCP1;1//AT3G42660//MS5//ATMSH6//ATCYCD1;1//RIP2 GO:0043086 negative regulation of catalytic activit... BP 0.0314234417602627 AT2G39850//ARA12//ATCYCD1;1 GO:0006928 movement of cell or subcellular componen... BP 0.0341675803231856 ATPLC1//ATVIIIA//ATMYO5 GO:0044092 negative regulation of molecular functio... BP 0.0400166491223902 AT2G39850//ARA12//ATCYCD1;1 GO:0006261 DNA-dependent DNA replication BP 0.0431195511454375 SMC6A//AT3G42660//ATMSH6 GO:0006270 DNA replication initiation BP 0.0433953293088371 AT3G42660//ATMSH6 GO:0022402 cell cycle process BP 0.0454955968306835 AT5G59740//SMC6A//AT3G42660//ATMSH6//ATCYCD1;1//RIP2 GO:0010440 stomatal lineage progression BP 0.0518587423919714 CYCP1;1//ATCYCD1;1 GO:0000079 regulation of cyclin-dependent protein s... BP 0.0548009376528702 CYCP1;1//ATCYCD1;1 GO:0009886 post-embryonic morphogenesis BP 0.0615968615628057 ATGER3//SMC6A//AT3G42660//ATMSH6//JAG//RGA GO:0071900 regulation of protein serine/threonine k... BP 0.0671294966794539 CYCP1;1//ATCYCD1;1 GO:0051726 regulation of cell cycle BP 0.069618398223217 CYCP1;1//AT3G42660//ATMSH6//ATCYCD1;1 GO:0043549 regulation of kinase activity BP 0.0703433907605926 CYCP1;1//ATCYCD1;1 GO:0045859 regulation of protein kinase activity BP 0.0703433907605926 CYCP1;1//ATCYCD1;1 GO:0007030 Golgi organization BP 0.0720375502620138 VHA-A//RGA//GC4 GO:0006281 DNA repair BP 0.0726434113685309 SMC6A//AT4G12740//ATMSH6//ALKBH2 GO:0051338 regulation of transferase activity BP 0.0736068139463747 CYCP1;1//ATCYCD1;1 GO:0048437 floral organ development BP 0.0762016096667874 SMC6A//AT3G42660//ATMSH6//CLI1//JAG//RGA GO:0001932 regulation of protein phosphorylation BP 0.0769182303812238 CYCP1;1//ATCYCD1;1 GO:0042325 regulation of phosphorylation BP 0.0769182303812238 CYCP1;1//ATCYCD1;1 GO:0000003 reproduction BP 0.0784368654167341 ARA12//AT5G59740//ATGRP-6//MS5//ATMSH6//RGA GO:0010089 xylem development BP 0.0802761323346197 AT3G55720//ATMYO5 GO:0006260 DNA replication BP 0.0837505144154971 SMC6A//AT3G42660//ATMSH6//ATCYCD1;1 GO:0048193 Golgi vesicle transport BP 0.0846411536527444 AT2G21630//VHA-A//GC4 GO:0009892 negative regulation of metabolic process BP 0.089206625254845 AT2G39850//ARA12//AT5G59740//SMC6A//AT3G42660//ATMSH6//ATCYCD1;1 GO:0010256 endomembrane system organization BP 0.0912739227622754 VHA-A//RGA//GC4 GO:0010087 phloem or xylem histogenesis BP 0.0941434010272834 AT3G55720//ATMYO5 GO:0048653 anther development BP 0.0977120690275993 CLI1//JAG GO:0006305 DNA alkylation BP 0.0981171191812738 SMC6A//AT3G42660//AT4G12740 GO:0006306 DNA methylation BP 0.0981171191812738 SMC6A//AT3G42660//AT4G12740 GO:0044036 cell wall macromolecule metabolic proces... BP 0.0991824192687384 AT3G55720//ATVIIIA//ATMYO5//AT2G16980 GO:0006304 DNA modification BP 0.100443579784826 SMC6A//AT3G42660//AT4G12740 GO:0044728 DNA methylation or demethylation BP 0.100443579784826 SMC6A//AT3G42660//AT4G12740 GO:0006974 cellular response to DNA damage stimulus BP 0.100974356621549 SMC6A//AT4G12740//ATMSH6//ALKBH2 GO:0009856 pollination BP 0.100974356621549 ATGRP-6//CLI1//AT1G03010//PIP5K5 GO:0044706 multi-multicellular organism process BP 0.100974356621549 ATGRP-6//CLI1//AT1G03010//PIP5K5 GO:0048646 anatomical structure formation involved ... BP 0.100974356621549 SMC6A//AT3G42660//ATMSH6//JAG GO:0006284 base-excision repair BP 0.109181747168719 808_ GO:0051321 meiotic cell cycle BP 0.114858004116066 AT5G59740//MS5//ATMSH6 GO:0009798 axis specification BP 0.116099415401142 AT3G55720//CLI1 GO:0008356 asymmetric cell division BP 0.119428033871368 683_ GO:0046131 pyrimidine ribonucleoside metabolic proc... BP 0.119428033871368 678_ GO:0080050 regulation of seed development BP 0.119428033871368 331_ GO:0007062 sister chromatid cohesion BP 0.131386748899337 AT5G59740//SMC6A GO:0009860 pollen tube growth BP 0.137833712099357 ATGRP-6//AT1G03010//PIP5K5 GO:0031048 chromatin silencing by small RNA BP 0.139196816519258 AT5G59740//SMC6A GO:0006213 pyrimidine nucleoside metabolic process BP 0.139571822383195 678_ GO:0006473 protein acetylation BP 0.139571822383195 636_ GO:0009894 regulation of catabolic process BP 0.139571822383195 331_ GO:0051641 cellular localization BP 0.140203199909488 ATPLC1//AT3G19370//ATSYP131//AT1G65080//ATVIIIA//ATMYO5//AT2G21630//VHA-A//GC4//AT2G19080 GO:0030029 actin filament-based process BP 0.143140669752493 ATPLC1//ATVIIIA//ATMYO5 GO:0016192 vesicle-mediated transport BP 0.146112557337816 ATSYP131//AT2G21630//VHA-A//GC4 GO:0006275 regulation of DNA replication BP 0.147105946958675 AT3G42660//ATMSH6 GO:0015988 energy coupled proton transmembrane tran... BP 0.149471941537821 302_ GO:0015991 ATP hydrolysis coupled proton transport BP 0.149471941537821 302_ GO:0017014 protein nitrosylation BP 0.149471941537821 004_ GO:0018119 peptidyl-cysteine S-nitrosylation BP 0.149471941537821 004_ GO:0045736 negative regulation of cyclin-dependent ... BP 0.149471941537821 697_ GO:0050790 regulation of catalytic activity BP 0.150365789279751 AT2G39850//ARA12//CYCP1;1//ATCYCD1;1 GO:0048569 post-embryonic organ development BP 0.153837692104293 SMC6A//AT3G42660//ATMSH6//CLI1//JAG//RGA GO:0007167 enzyme linked receptor protein signaling... BP 0.159136933134874 RLK902//CLI1 GO:0007169 transmembrane receptor protein tyrosine ... BP 0.159136933134874 RLK902//CLI1 GO:0009555 pollen development BP 0.162231960181656 MS5//CLI1//VHA-A GO:0010092 specification of organ identity BP 0.168935063787607 263_ GO:0010093 specification of floral organ identity BP 0.168935063787607 263_ GO:0018198 peptidyl-cysteine modification BP 0.168935063787607 004_ GO:0051604 protein maturation BP 0.168935063787607 442_ GO:0003002 regionalization BP 0.17064129918594 AT3G55720//CLI1//JAG GO:0009653 anatomical structure morphogenesis BP 0.178222958016735 ATGER3//LSH1//SMC6A//ATGRP-6//AT3G55720//AT3G42660//ATMSH6//AHDP//JAG//AT1G03010//VHA-A//RGA//PIP5K5 GO:0071901 negative regulation of protein serine/th... BP 0.178500597526348 697_ GO:1901658 glycosyl compound catabolic process BP 0.178500597526348 678_ GO:0009119 ribonucleoside metabolic process BP 0.17956843356598 AT4G29600//VHA-A GO:0001933 negative regulation of protein phosphory... BP 0.187957109909508 697_ GO:0006469 negative regulation of protein kinase ac... BP 0.187957109909508 697_ GO:0033673 negative regulation of kinase activity BP 0.187957109909508 697_ GO:0042326 negative regulation of phosphorylation BP 0.187957109909508 697_ GO:0051348 negative regulation of transferase activ... BP 0.187957109909508 697_ GO:0048868 pollen tube development BP 0.190731995863635 ATGRP-6//AT1G03010//PIP5K5 GO:1903046 meiotic cell cycle process BP 0.192014277517629 AT5G59740//ATMSH6 GO:0006259 DNA metabolic process BP 0.192516314202011 SMC6A//AT3G42660//AT4G12740//ATMSH6//ALKBH2//ATCYCD1;1 GO:0007166 cell surface receptor signaling pathway BP 0.196188794109674 RLK902//CLI1 GO:0009887 organ morphogenesis BP 0.196747693598588 SMC6A//AT3G42660//ATMSH6//JAG//RGA GO:0010563 negative regulation of phosphorus metabo... BP 0.206547977924378 697_