GOID TERM ONTOLOGY pValue Genes GO:0009944 polarity specification of adaxial/abaxia... BP 0.00071305685736389 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0009943 adaxial/abaxial axis specification BP 0.000788026474128509 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0065001 specification of axis polarity BP 0.000788026474128509 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0009798 axis specification BP 0.00114793361436322 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0003002 regionalization BP 0.00116691671689909 TET1//AT5G17980//AT3G61700//AMP1//CRM2//AtRABA5b//OBP2//AT2G19970 GO:0009955 adaxial/abaxial pattern specification BP 0.0012542935386965 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0009888 tissue development BP 0.00173018763782759 CAC2//ATHDA18//TET1//AT5G17980//CYCP1;1//AT3G61700//GIS//AMP1//CRM2//GXM2//AHDP//AtHB33//CBB1//AT3G26770//AtRABA5b//AT1G01225//EPF2//5PTASE13//AT2G19970//AtAUX1 GO:0010305 leaf vascular tissue pattern formation BP 0.00180526620594151 TET1//AMP1//CRM2 GO:0007389 pattern specification process BP 0.00270830192843066 TET1//AT5G17980//AT3G61700//AMP1//CRM2//AtRABA5b//OBP2//AT2G19970//AtAUX1 GO:0060429 epithelium development BP 0.00301839938400212 ATHDA18//EPF2//AtAUX1 GO:0009834 plant-type secondary cell wall biogenesi... BP 0.00527054448495043 CBB1//ATMYB58//ATERF38 GO:0042335 cuticle development BP 0.00527054448495043 ACP5//AHDP//AT1G01800 GO:0009411 response to UV BP 0.00582968546951373 ELIP2//CAC2//EFO1//AHDP//CBB1//UVR3//AtAUX1 GO:0009799 specification of symmetry BP 0.00698812885336856 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0009855 determination of bilateral symmetry BP 0.00698812885336856 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0048364 root development BP 0.00901108252139446 CAC2//ATHDA18//TET1//AMP1//GXM2//AHDP//ATLOX1//CBB1//5PTASE13//AtAUX1 GO:0022622 root system development BP 0.00923814553905787 CAC2//ATHDA18//TET1//AMP1//GXM2//AHDP//ATLOX1//CBB1//5PTASE13//AtAUX1 GO:0043473 pigmentation BP 0.0112239307368962 CAC2//AHDP//CBB1//AtAUX1 GO:0043476 pigment accumulation BP 0.0112239307368962 CAC2//AHDP//CBB1//AtAUX1 GO:0043478 pigment accumulation in response to UV l... BP 0.0112239307368962 CAC2//AHDP//CBB1//AtAUX1 GO:0043479 pigment accumulation in tissues in respo... BP 0.0112239307368962 CAC2//AHDP//CBB1//AtAUX1 GO:0043480 pigment accumulation in tissues BP 0.0112239307368962 CAC2//AHDP//CBB1//AtAUX1 GO:0043481 anthocyanin accumulation in tissues in r... BP 0.0112239307368962 CAC2//AHDP//CBB1//AtAUX1 GO:0010015 root morphogenesis BP 0.0138330073657163 CAC2//ATHDA18//TET1//GXM2//AHDP//ATLOX1//CBB1//AtAUX1 GO:0009611 response to wounding BP 0.0144537410033398 CYP74B2//CAC2//ATLOX1//OBP2//5PTASE13 GO:0009816 defense response to bacterium, incompati... BP 0.0144585821618463 ACD6//ATLOX1 GO:2000026 regulation of multicellular organismal d... BP 0.0152085612646661 ELIP2//AtHAM4//ATHDA18//TET1//AT5G17980//AMP1//CRM2//CBB1//AtRABA5b//LYM1//EPF2//AT2G19970 GO:0090627 plant epidermal cell differentiation BP 0.0161817985005452 CAC2//ATHDA18//GXM2//AHDP//CBB1//EPF2//AtAUX1 GO:0010014 meristem initiation BP 0.016412457554964 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0044036 cell wall macromolecule metabolic proces... BP 0.0166826748071871 GXM2//AT3G26770//PAL4//AT1G70550//LYM1//AT1G01225 GO:0051239 regulation of multicellular organismal p... BP 0.0189846486286702 ELIP2//AtHAM4//ATHDA18//TET1//AT5G17980//AMP1//CRM2//CBB1//AtRABA5b//LYM1//EPF2//AT2G19970 GO:0010311 lateral root formation BP 0.0195328022652883 ATLOX1//AtAUX1 GO:0009074 aromatic amino acid family catabolic pro... BP 0.0211833916701294 CYP74B2//AT5G19240//PAL4 GO:0010092 specification of organ identity BP 0.0223095911587919 AT3G61700//CRM2 GO:0010093 specification of floral organ identity BP 0.0223095911587919 AT3G61700//CRM2 GO:0090558 plant epidermis development BP 0.0223505757579261 CAC2//ATHDA18//CYCP1;1//AT3G61700//GIS//GXM2//AHDP//AtHB33//CBB1//EPF2//AtAUX1 GO:0050793 regulation of developmental process BP 0.0229394363026174 ELIP2//AtHAM4//ATHDA18//TCP5//TET1//AT5G17980//AMP1//CRM2//CBB1//AtRABA5b//LYM1//EPF2//AT2G19970 GO:0071554 cell wall organization or biogenesis BP 0.0240715186004785 CAC2//GXM2//AtPME41//CBB1//AT3G26770//PAL4//AT1G70550//LYM1//AT1G01225//ATMYB58//5PTASE13//ATERF38//AtAUX1 GO:0009719 response to endogenous stimulus BP 0.0241836042135857 TCP5//GIS//AT3G51200//APRR2//AtPME41//ATLOX1//AtHB33//DELTA-VPE//IAA26//AT2G37950//AT3G08030//AT1G70550//OBP2//ESP//5PTASE13//AT2G37110//AtAUX1 GO:0016143 S-glycoside metabolic process BP 0.0245247621909169 IMS2//AT3G56010//ATIPS1//ATSFR2//OBP2//ESP GO:0019757 glycosinolate metabolic process BP 0.0245247621909169 IMS2//AT3G56010//ATIPS1//ATSFR2//OBP2//ESP GO:0019760 glucosinolate metabolic process BP 0.0245247621909169 IMS2//AT3G56010//ATIPS1//ATSFR2//OBP2//ESP GO:1901658 glycosyl compound catabolic process BP 0.0252387804377705 AGAL1//ESP GO:0009725 response to hormone BP 0.026994936396993 TCP5//GIS//AT3G51200//APRR2//AtPME41//ATLOX1//AtHB33//DELTA-VPE//IAA26//AT2G37950//AT3G08030//AT1G70550//OBP2//ESP//5PTASE13//AtAUX1 GO:0010218 response to far red light BP 0.0271736826856825 ELIP2//EFO1//OHP2//AtAUX1 GO:0048645 organ formation BP 0.02984085092763 AT3G61700//CRM2//ATLOX1//LYM1//AtAUX1 GO:0008544 epidermis development BP 0.0315329924114105 ATHDA18//EPF2 GO:0010075 regulation of meristem growth BP 0.0351337405151811 TET1//AT5G17980//CBB1//AtRABA5b//AT2G19970 GO:0035266 meristem growth BP 0.0374036319516269 TET1//AT5G17980//CBB1//AtRABA5b//AT2G19970 GO:0010101 post-embryonic root morphogenesis BP 0.0383739741398613 ATLOX1//AtAUX1 GO:0010102 lateral root morphogenesis BP 0.0383739741398613 ATLOX1//AtAUX1 GO:0010033 response to organic substance BP 0.0386964006016156 ACD6//ELIP2//TCP5//EFO1//ATPIP1//GIS//AT3G51200//CRM2//APRR2//AtPME41//OHP2//ATLOX1//AtHB33//DELTA-VPE//IAA26//AT2G37950//AT3G08030//AT1G70550//OBP2//ESP//5PTASE13//SMC3//AT2G37110//AtAUX1 GO:0010053 root epidermal cell differentiation BP 0.0403850369449727 CAC2//ATHDA18//GXM2//AHDP//CBB1//AtAUX1 GO:0015711 organic anion transport BP 0.0407706442281767 GTR2//AtPME41//AT2G37110//AtAUX1 GO:0044550 secondary metabolite biosynthetic proces... BP 0.0435396170949365 CAC2//IMS2//ATIPS1//ATSFR2//OBP2//ATMYB58 GO:1901136 carbohydrate derivative catabolic proces... BP 0.0457222372937819 AGAL1//ESP GO:0010087 phloem or xylem histogenesis BP 0.0474434154052291 AT3G26770//AT1G01225//5PTASE13 GO:0048646 anatomical structure formation involved ... BP 0.0491335996034694 AT3G61700//CRM2//ATLOX1//LYM1//AtD27//AtAUX1 GO:0019748 secondary metabolic process BP 0.0495716550633534 CAC2//IMS2//AT3G56010//ATIPS1//CBB1//ATSFR2//OBP2//ATMYB58//ESP GO:0009684 indoleacetic acid biosynthetic process BP 0.0497335144572396 CYP74B2//IMS2//AT5G19240 GO:0009683 indoleacetic acid metabolic process BP 0.0520767791772904 CYP74B2//IMS2//AT5G19240 GO:0044707 single-multicellular organism process BP 0.0530040482568762 ELIP2//ATVAMP724//AtHAM4//CAC2//ACP5//GTR2//ATHDA18//TCP5//TET1//AT5G17980//CYCP1;1//SAF1//AT3G61700//AMP1//ATIPS1//CRM2//GXM2//AHDP//ATLOX1//AtHB33//DELTA-VPE//AT2G37950//CBB1//AT3G08030//AtRABA5b//UGE3//LYM1//OBP2//AT1G01800//EPF2//AtD27//ESP//5PTASE13//AT2G19970//AtAUX1 GO:0006790 sulfur compound metabolic process BP 0.05616218150825 CAC2//TET1//IMS2//CBL//AT3G56010//ATIPS1//AT3G24030//CBB1//ATSFR2//OBP2//ESP GO:0009653 anatomical structure morphogenesis BP 0.0569943845173095 CAC2//ATHDA18//TCP5//TET1//AT5G17980//AT3G61700//GIS//CRM2//GXM2//AHDP//ATLOX1//AtHB33//CBB1//AtRABA5b//LYM1//EPF2//AtD27//5PTASE13//AT2G19970//AtAUX1 GO:0000038 very long-chain fatty acid metabolic pro... BP 0.0576140467078407 ACP5//AT1G01800 GO:0009933 meristem structural organization BP 0.0603038949882443 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:1901657 glycosyl compound metabolic process BP 0.0604018366520976 AGAL1//IMS2//AT3G56010//ATIPS1//ATSFR2//OBP2//ESP GO:0048532 anatomical structure arrangement BP 0.0618536065287321 TET1//AT5G17980//CRM2//AtRABA5b//AT2G19970 GO:0009825 multidimensional cell growth BP 0.061970959539955 CAC2//CBB1//AtAUX1 GO:0044262 cellular carbohydrate metabolic process BP 0.0634038311359778 AGAL1//AT3G56010//TPPH//ATIPS1//CBB1//ATSFR2//PAL4//AT1G70550//OBP2//5PTASE13 GO:0006865 amino acid transport BP 0.0672227488141354 AtPME41//AT2G37110//AtAUX1 GO:0010051 xylem and phloem pattern formation BP 0.0672227488141354 TET1//AMP1//CRM2 GO:0048507 meristem development BP 0.0687053966351704 TET1//AT5G17980//AT3G61700//AMP1//CRM2//CBB1//AtRABA5b//AT2G19970 GO:0042446 hormone biosynthetic process BP 0.0699391003596373 CYP74B2//CAC2//IMS2//AT5G19240//CBB1 GO:0010817 regulation of hormone levels BP 0.0701453916912646 CYP74B2//CAC2//TET1//IMS2//AT5G19240//CBB1//AtAUX1 GO:0009808 lignin metabolic process BP 0.0704437819612715 CBB1//ATMYB58 GO:0007275 multicellular organismal development BP 0.072369866375795 ELIP2//ATVAMP724//AtHAM4//CAC2//ACP5//ATHDA18//TCP5//TET1//AT5G17980//CYCP1;1//SAF1//AT3G61700//AMP1//ATIPS1//CRM2//GXM2//AHDP//ATLOX1//AtHB33//DELTA-VPE//AT2G37950//CBB1//AT3G08030//AtRABA5b//UGE3//LYM1//OBP2//AT1G01800//EPF2//AtD27//ESP//5PTASE13//AT2G19970//AtAUX1 GO:0009851 auxin biosynthetic process BP 0.0726711372112174 CYP74B2//IMS2//AT5G19240 GO:0048509 regulation of meristem development BP 0.0750584488044472 TET1//AT5G17980//CBB1//AtRABA5b//AT2G19970 GO:0042435 indole-containing compound biosynthetic ... BP 0.0754674295556247 CYP74B2//IMS2//AT5G19240 GO:0048856 anatomical structure development BP 0.0760052012158356 ATVAMP724//AtHAM4//CAC2//ACP5//ATHDA18//TCP5//TET1//AT5G17980//CYCP1;1//SAF1//AT3G61700//GIS//AMP1//ATIPS1//CRM2//GXM2//AHDP//ATLOX1//AtHB33//DELTA-VPE//AT2G37950//CBB1//AT3G26770//AT3G08030//AtRABA5b//UGE3//LYM1//AT1G01225//AT1G01800//EPF2//AtD27//ESP//5PTASE13//AT2G19970//AtAUX1 GO:0043647 inositol phosphate metabolic process BP 0.0812008289642939 ATIPS1//AT4G31310//5PTASE13 GO:0044723 single-organism carbohydrate metabolic p... BP 0.0814068938215942 AGAL1//CAC2//ATPIP1//AT3G56010//TPPH//ATIPS1//CBB1//ATSFR2//PAL4//UGE3//AT1G70550//OBP2//5PTASE13//AtAUX1 GO:0048513 organ development BP 0.0834386063816461 CAC2//ATHDA18//TCP5//TET1//AT5G17980//SAF1//AT3G61700//AMP1//CRM2//GXM2//AHDP//ATLOX1//CBB1//AtRABA5b//LYM1//ESP//5PTASE13//AT2G19970//AtAUX1 GO:0032502 developmental process BP 0.0904754297075533 ELIP2//ATVAMP724//AtHAM4//CAC2//ACP5//ATHDA18//TCP5//TET1//AT5G17980//CYCP1;1//SAF1//AT3G61700//GIS//AMP1//ATIPS1//CRM2//GXM2//AHDP//ATLOX1//AtHB33//DELTA-VPE//AT2G37950//CBB1//AT3G26770//AT3G08030//AtRABA5b//UGE3//LYM1//AT1G01225//OBP2//AT1G01800//EPF2//AtD27//ESP//5PTASE13//AT2G19970//AtAUX1 GO:0042546 cell wall biogenesis BP 0.0916031600734847 CBB1//PAL4//AT1G70550//ATMYB58//ATERF38 GO:1901700 response to oxygen-containing compound BP 0.0917019160473388 ACD6//ELIP2//TCP5//EFO1//SVR3//ATPIP1//GIS//AT3G44380//AtPME41//OHP2//ATLOX1//AtHB33//DELTA-VPE//AT2G37950//AT3G08030//OBP2//ESP//5PTASE13//AT2G37110 GO:0008361 regulation of cell size BP 0.0936140630522149 TET1//AtAUX1 GO:0072330 monocarboxylic acid biosynthetic process BP 0.0937669657645402 CYP74B2//CAC2//ACP5//IMS2//AT5G19240//ATSMO1-3//ATLOX1//OBP2 GO:0048638 regulation of developmental growth BP 0.0955170551502066 TET1//AT5G17980//CBB1//AtRABA5b//AT2G19970 GO:0009850 auxin metabolic process BP 0.0994764194500452 CYP74B2//IMS2//AT5G19240 GO:0015849 organic acid transport BP 0.0994764194500452 AtPME41//AT2G37110//AtAUX1 GO:0042430 indole-containing compound metabolic pro... BP 0.0994764194500452 CYP74B2//IMS2//AT5G19240 GO:0046942 carboxylic acid transport BP 0.0994764194500452 AtPME41//AT2G37110//AtAUX1 GO:0010054 trichoblast differentiation BP 0.0995154317638854 CAC2//GXM2//AHDP//CBB1//AtAUX1 GO:1901565 organonitrogen compound catabolic proces... BP 0.0995154317638854 CYP74B2//AGAL1//AT5G19240//ACDO1//PAL4 GO:0006569 tryptophan catabolic process BP 0.103420782581049 CYP74B2//AT5G19240 GO:0042436 indole-containing compound catabolic pro... BP 0.103420782581049 CYP74B2//AT5G19240 GO:0046218 indolalkylamine catabolic process BP 0.103420782581049 CYP74B2//AT5G19240 GO:0009698 phenylpropanoid metabolic process BP 0.109182503772148 CAC2//CBB1//ATMYB58