GOID TERM ONTOLOGY pValue Genes GO:0009741 response to brassinosteroid BP 5.16416513327318e-05 AXR5//ATBRI1//AUF1//AT2G41820//ATAUX2-27//MAKR4//BAS1 GO:0009733 response to auxin BP 7.64938003556405e-05 GH3.3//AXR5//ATCPL2//IAA30//GH3.5//IAA2//AUF1//AT2G41820//ATAUX2-27//ABCB1//ABR//MAKR4//BAS1 GO:0031048 chromatin silencing by small RNA BP 0.000387321479100473 KINESIN-12A//KAC2//AHBP-1B//emb1974//AT1G63640//ATVLN1//AGO4 GO:0009958 positive gravitropism BP 0.000499258261346653 MEL1//ABCB1//ABR GO:0010583 response to cyclopentenone BP 0.00101327157777021 AXR5//IAA30//Phox4//GH3.5//IAA2//ATAUX2-27//MAKR4 GO:0009886 post-embryonic morphogenesis BP 0.00147554532006689 LBD18//AGO10//CYP78A7//ATCKX6//ATBRI1//JGL//AT1G63640//ATEME1A//ATHB-15//ASL18//AGO4//SRO1 GO:0048569 post-embryonic organ development BP 0.00186084053531226 LBD18//AXR5//GATA23//AT5G60140//CYP78A7//ATBRI1//JGL//AT1G63640//ABCB1//ATEME1A//ATHB-15//ASL18//AGO4//SRO1//ABR GO:0006346 methylation-dependent chromatin silencin... BP 0.00255560289293626 KINESIN-12A//AGO10//emb1974//AT1G63640//ATVLN1//AGO4 GO:0014070 response to organic cyclic compound BP 0.00266296550148915 AXR5//AGO10//AHBP-1B//IAA30//ATWRKY70//ATBRI1//Phox4//GH3.5//IAA2//AUF1//AT2G41820//AT1G63640//ATAUX2-27//AGO4//MAKR4//BAS1 GO:0065008 regulation of biological quality BP 0.00372865299027101 GH3.3//LBD18//TOZ//ACLB-2//AGO10//ATCKX6//ATGLR3.6//ATBRI1//GH3.5//AT3G26370//AUF1//AT1G63640//ATVLN1//ABCB1//ATHB-15//AGO4//ATGLR2.7//ABR//BAS1 GO:0048527 lateral root development BP 0.00416582979207683 LBD18//AXR5//GATA23//ASL18//SRO1 GO:0010101 post-embryonic root morphogenesis BP 0.00553262668216124 LBD18//ASL18//SRO1 GO:0010102 lateral root morphogenesis BP 0.00553262668216124 LBD18//ASL18//SRO1 GO:0022622 root system development BP 0.00561197215363427 LBD18//AXR5//LOI1//GATA23//IAA30//ATBRI1//ABCB1//ATHB-15//ASL18//SRO1//ABR GO:0048364 root development BP 0.00561197215363427 LBD18//AXR5//LOI1//GATA23//IAA30//ATBRI1//ABCB1//ATHB-15//ASL18//SRO1//ABR GO:0048528 post-embryonic root development BP 0.00610635620536417 LBD18//AXR5//GATA23//ASL18//SRO1 GO:0006342 chromatin silencing BP 0.00630045191290957 KINESIN-12A//KAC2//AGO10//AHBP-1B//emb1974//AT1G63640//ATVLN1//AGO4 GO:0016310 phosphorylation BP 0.00632656849135674 BSK5//CIPK5//AT3G61160//ATWRKY70//AT3G46930//ATBRI1//AT4G25160//CYCT1;4//CRK38//AT4G02580//RKF1//AT1G34110//AT3G05050//AT3G03770//AT1G69790//AT2G41820//AT1G53440//AT1G63640//ATVLN1//AT2G24230//AGO4//ABR//CPK14 GO:0031047 gene silencing by RNA BP 0.00642287236701666 KINESIN-12A//KAC2//AGO10//AHBP-1B//emb1974//AT1G63640//ATVLN1//ATEME1A//AGO4 GO:0045814 negative regulation of gene expression, ... BP 0.0067616613035646 KINESIN-12A//KAC2//AGO10//AHBP-1B//emb1974//AT1G63640//ATVLN1//AGO4 GO:0007166 cell surface receptor signaling pathway BP 0.00704359689969339 ATGLR3.6//RKF1//AT1G34110//AT3G03770//AT2G41820//AT2G24230 GO:0009887 organ morphogenesis BP 0.00749607683057721 LBD18//AGO10//CYP78A7//ATBRI1//JGL//AT1G63640//ATVLN1//ATEME1A//ATHB-15//ASL18//AGO4 GO:0048645 organ formation BP 0.00759630754409636 LBD18//ATBRI1//JGL//AT1G63640//ATEME1A//ASL18//AGO4 GO:0090304 nucleic acid metabolic process BP 0.00881963903686999 KINESIN-12A//AXR5//AT5G09510//TOZ//GATA23//KAC2//AT5G65130//AT5G60140//DDB2//AT5G57950//AT5G55100//AT5G49110//bHLH071//AGO10//ATUBC4//AHBP-1B//ATCPL2//IAA30//EDA14//ATWRKY70//AT3G49130//BIR6//emb2474//emb2726//AT4G27240//CYCT1;4//anac071//AT4G02610//APP//UVH3//IAA2//AT3G21810//emb1974//AT3G03970//AT1G68810//AT1G18850//AT1G63640//ATAUX2-27//ATHB18//ATRECQ2//AT2G13440//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12" GO:0006468 protein phosphorylation BP 0.00905040861517545 BSK5//CIPK5//AT3G61160//AT3G46930//AT4G25160//CYCT1;4//CRK38//RKF1//AT1G34110//AT3G05050//AT3G03770//AT1G69790//AT2G41820//AT1G53440//AT1G63640//ATVLN1//AT2G24230//AGO4//ABR//CPK14 GO:0010817 regulation of hormone levels BP 0.0100865135890998 ACLB-2//ATCKX6//ATBRI1//AT3G26370//AUF1//ABCB1//ABR//BAS1 GO:0010224 response to UV-B BP 0.0100904128666354 DDB2//ATBRI1//UVH3//AT3G03770 GO:0048878 chemical homeostasis BP 0.0104867213653749 GH3.3//ATGLR3.6//ATBRI1//GH3.5//ATGLR2.7//BAS1 GO:0016070 RNA metabolic process BP 0.0111229730719311 KINESIN-12A//AXR5//AT5G09510//TOZ//GATA23//KAC2//AT5G65130//AT5G60140//AT5G55100//bHLH071//AGO10//AHBP-1B//ATCPL2//IAA30//EDA14//ATWRKY70//AT3G49130//BIR6//emb2474//emb2726//AT4G27240//CYCT1;4//anac071//AT4G02610//IAA2//AT3G21810//emb1974//AT3G03970//AT1G68810//AT1G18850//AT1G63640//ATAUX2-27//ATHB18//ATRECQ2//AT2G13440//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12 GO:0044260 cellular macromolecule metabolic process BP 0.0114444570385959 LBD18//KINESIN-12A//AXR5//AT4G14290//AT5G09510//TOZ//GATA23//KAC2//AT5G65130//AT5G60140//BSK5//DDB2//AT5G57950//AT5G55100//ACLB-2//AT5G49110//bHLH071//AGO10//ATXR7//ATUBC4//CIPK5//AHBP-1B//ATCPL2//IAA30//AT3G61160//EDA14//ATGSL11//ATWRKY70//AT3G49130//BIR6//AT3G46930//emb2474//AT4G38640//emb2726//AT4G27240//AT4G25160//ATCSLG2//CYCT1;4//anac071//Hop3//AT4G10780//ATISA3//CRK38//AT4G02580//AT4G02610//APP//RKF1//AT1G34110//UVH3//IAA2//AT3G21810//emb1974//AT3G03970//AT3G05050//AT3G03770//PUB43//AT1G68810//AT1G69790//AT2G41820//AT1G53440//AT1G18850//AT1G63640//ATAUX2-27//ATHB18//AT1G21740//ATRECQ2//AT2G13440//ATVLN1//AT2G17110//ATEME1A//ATHB-15//AT2G24230//AGO4//AtWRKY12//ABR//CPK14 GO:0043412 macromolecule modification BP 0.0119137819771478 KINESIN-12A//AT4G14290//AT5G09510//TOZ//BSK5//ACLB-2//ATXR7//CIPK5//AT3G61160//ATWRKY70//AT3G46930//emb2474//AT4G38640//AT4G25160//CYCT1;4//AT4G10780//CRK38//APP//RKF1//AT1G34110//UVH3//emb1974//AT3G05050//AT3G03770//PUB43//AT1G69790//AT2G41820//AT1G53440//AT1G18850//AT1G63640//AT1G21740//AT2G13440//ATVLN1//AT2G17110//ATEME1A//AT2G24230//AGO4//ABR//CPK14 GO:0007167 enzyme linked receptor protein signaling... BP 0.0123345394328951 RKF1//AT1G34110//AT3G03770//AT2G41820//AT2G24230 GO:0007169 transmembrane receptor protein tyrosine ... BP 0.0123345394328951 RKF1//AT1G34110//AT3G03770//AT2G41820//AT2G24230 GO:0045892 negative regulation of transcription, DN... BP 0.013263175035282 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:1902679 negative regulation of RNA biosynthetic ... BP 0.013263175035282 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:1903507 negative regulation of nucleic acid-temp... BP 0.013263175035282 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0048731 system development BP 0.0133459759342452 LBD18//AXR5//LOI1//AT4G14290//TOZ//GATA23//AT5G60140//ACLB-2//AGO10//ARP9//ATXR7//CYP78A7//ATCKX6//IAA30//ATWRKY70//emb2474//ATBRI1//MEL1//emb2726//CYCT1;4//AT1G17930//emb1974//JGL//AT1G63640//ATVLN1//ABCB1//ATEME1A//ATHB-15//ASL18//AGO4//MEE13//SRO1//ABR GO:0009411 response to UV BP 0.0133590238099718 DDB2//ATBRI1//UVH3//AT3G03770//ABCB1//ABR GO:0051253 negative regulation of RNA metabolic pro... BP 0.0136189834983606 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0010541 acropetal auxin transport BP 0.0137305256182537 AUF1//ABCB1 GO:0048366 leaf development BP 0.0140846878244215 TOZ//ATWRKY70//ATBRI1//CYCT1;4//ATVLN1//ATHB-15//AGO4//ABR GO:0010558 negative regulation of macromolecule bio... BP 0.0143518221211025 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:2000113 negative regulation of cellular macromol... BP 0.0143518221211025 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0006464 cellular protein modification process BP 0.0143879314191445 KINESIN-12A//AT4G14290//TOZ//BSK5//ACLB-2//ATXR7//CIPK5//AT3G61160//ATWRKY70//AT3G46930//AT4G38640//AT4G25160//CYCT1;4//AT4G10780//CRK38//APP//RKF1//AT1G34110//UVH3//emb1974//AT3G05050//AT3G03770//PUB43//AT1G69790//AT2G41820//AT1G53440//AT1G63640//AT1G21740//ATVLN1//AT2G17110//ATEME1A//AT2G24230//AGO4//ABR//CPK14 GO:0036211 protein modification process BP 0.0143879314191445 KINESIN-12A//AT4G14290//TOZ//BSK5//ACLB-2//ATXR7//CIPK5//AT3G61160//ATWRKY70//AT3G46930//AT4G38640//AT4G25160//CYCT1;4//AT4G10780//CRK38//APP//RKF1//AT1G34110//UVH3//emb1974//AT3G05050//AT3G03770//PUB43//AT1G69790//AT2G41820//AT1G53440//AT1G63640//AT1G21740//ATVLN1//AT2G17110//ATEME1A//AT2G24230//AGO4//ABR//CPK14 GO:0045934 negative regulation of nucleobase-contai... BP 0.0151134865767342 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0051172 negative regulation of nitrogen compound... BP 0.0151134865767342 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0009791 post-embryonic development BP 0.0152363798505846 LBD18//AXR5//AT4G14290//TOZ//GATA23//AT5G60140//ACLB-2//AGO10//ARP9//ATXR7//CYP78A7//ATCKX6//IAA30//emb2474//ATBRI1//MEL1//emb2726//emb1974//JGL//AT1G63640//ABCB1//ATEME1A//ATHB-15//ASL18//AGO4//MEE13//SRO1//ABR//BRIZ1 GO:0006084 acetyl-CoA metabolic process BP 0.0157853399346098 LOI1//ACLB-2//AT3G26370 GO:0051225 spindle assembly BP 0.0157853399346098 KINESIN-12A//ATVLN1//AGO4 GO:0031327 negative regulation of cellular biosynth... BP 0.0159046096568852 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0009890 negative regulation of biosynthetic proc... BP 0.0167258196041115 KINESIN-12A//KAC2//AGO10//AHBP-1B//ATWRKY70//emb1974//AT1G63640//ATVLN1//AGO4 GO:0006637 acyl-CoA metabolic process BP 0.0171556435509508 LOI1//ACLB-2//AT3G26370 GO:0035383 thioester metabolic process BP 0.0171556435509508 LOI1//ACLB-2//AT3G26370 GO:0048513 organ development BP 0.0183611062901662 LBD18//AXR5//LOI1//TOZ//GATA23//AT5G60140//AGO10//CYP78A7//IAA30//ATWRKY70//ATBRI1//MEL1//AT1G17930//JGL//AT1G63640//ATVLN1//ABCB1//ATEME1A//ATHB-15//ASL18//AGO4//SRO1//ABR GO:0032535 regulation of cellular component size BP 0.018557235612626 LBD18//ATVLN1//ABCB1//ATHB-15//ABR GO:0090066 regulation of anatomical structure size BP 0.018557235612626 LBD18//ATVLN1//ABCB1//ATHB-15//ABR GO:0007051 spindle organization BP 0.0185904151755865 KINESIN-12A//ATVLN1//AGO4 GO:0007049 cell cycle BP 0.0189913843463562 KINESIN-12A//TOZ//KAC2//AT5G57950//AT5G49110//SUV2//AHBP-1B//ATGSL11//CYCT1;4//AT1G63640//ATRECQ2//ATVLN1//ATEME1A//AGO4//ATZW10 GO:0010252 auxin homeostasis BP 0.0190527597389827 GH3.3//GH3.5 GO:0006974 cellular response to DNA damage stimulus BP 0.0191335230682553 DDB2//SUV2//ATUBC4//APP//UVH3//ATRECQ2//ATEME1A//AGO4 GO:0009734 auxin-activated signaling pathway BP 0.0216540362140011 ATCPL2//ABCB1//ABR GO:0070925 organelle assembly BP 0.0216540362140011 KINESIN-12A//ATVLN1//AGO4 GO:0030838 positive regulation of actin filament po... BP 0.0217395452040956 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0045010 actin nucleation BP 0.0217395452040956 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0010311 lateral root formation BP 0.0219879039259945 LBD18//ASL18 GO:0031334 positive regulation of protein complex a... BP 0.022873063349076 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0032273 positive regulation of protein polymeriz... BP 0.022873063349076 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0051495 positive regulation of cytoskeleton orga... BP 0.022873063349076 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0042435 indole-containing compound biosynthetic ... BP 0.0232830561363048 ATWRKY70//GH3.5//AT4G02610 GO:0006355 regulation of transcription, DNA-templat... BP 0.0235655416173782 KINESIN-12A//AXR5//GATA23//KAC2//AT5G65130//AT5G60140//bHLH071//AGO10//AHBP-1B//ATCPL2//IAA30//ATWRKY70//AT4G27240//CYCT1;4//anac071//IAA2//AT3G21810//emb1974//AT1G68810//AT1G63640//ATAUX2-27//ATHB18//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12 GO:1903506 regulation of nucleic acid-templated tra... BP 0.0235655416173782 KINESIN-12A//AXR5//GATA23//KAC2//AT5G65130//AT5G60140//bHLH071//AGO10//AHBP-1B//ATCPL2//IAA30//ATWRKY70//AT4G27240//CYCT1;4//anac071//IAA2//AT3G21810//emb1974//AT1G68810//AT1G63640//ATAUX2-27//ATHB18//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12 GO:2001141 regulation of RNA biosynthetic process BP 0.0235655416173782 KINESIN-12A//AXR5//GATA23//KAC2//AT5G65130//AT5G60140//bHLH071//AGO10//AHBP-1B//ATCPL2//IAA30//ATWRKY70//AT4G27240//CYCT1;4//anac071//IAA2//AT3G21810//emb1974//AT1G68810//AT1G63640//ATAUX2-27//ATHB18//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12 GO:0008064 regulation of actin polymerization or de... BP 0.0240419816958872 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0030832 regulation of actin filament length BP 0.0240419816958872 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0030833 regulation of actin filament polymerizat... BP 0.0240419816958872 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0032956 regulation of actin cytoskeleton organiz... BP 0.0240419816958872 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0032970 regulation of actin filament-based proce... BP 0.0240419816958872 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0044089 positive regulation of cellular componen... BP 0.0240419816958872 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0051252 regulation of RNA metabolic process BP 0.0240623740634351 KINESIN-12A//AXR5//GATA23//KAC2//AT5G65130//AT5G60140//bHLH071//AGO10//AHBP-1B//ATCPL2//IAA30//ATWRKY70//AT4G27240//CYCT1;4//anac071//IAA2//AT3G21810//emb1974//AT1G68810//AT1G63640//ATAUX2-27//ATHB18//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12 GO:0048443 stamen development BP 0.0246214131618161 AT5G60140//ATBRI1//JGL//ABCB1//ABR GO:0048466 androecium development BP 0.0246214131618161 AT5G60140//ATBRI1//JGL//ABCB1//ABR GO:0016458 gene silencing BP 0.0250071727413321 KINESIN-12A//KAC2//AGO10//AHBP-1B//emb1974//AT1G63640//ATVLN1//ATEME1A//AGO4 GO:0010540 basipetal auxin transport BP 0.0250967453659904 AUF1//ABCB1 GO:0030041 actin filament polymerization BP 0.0264868824880926 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0032271 regulation of protein polymerization BP 0.0264868824880926 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0043254 regulation of protein complex assembly BP 0.0264868824880926 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0051493 regulation of cytoskeleton organization BP 0.0277632502944949 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0008154 actin polymerization or depolymerization BP 0.0290757893301997 LBD18//ATVLN1//ABCB1//ATHB-15 GO:0006281 DNA repair BP 0.029219254440035 DDB2//ATUBC4//APP//UVH3//ATRECQ2//ATEME1A//AGO4 GO:0007275 multicellular organismal development BP 0.0294506167781479 LBD18//KINESIN-12A//AXR5//LOI1//AT4G14290//TOZ//GATA23//AT5G60140//SESA5//ACLB-2//AGO10//ARP9//ATXR7//CYP78A7//ATCKX6//IAA30//EDA14//ATGSL11//ATWRKY70//BIR6//emb2474//ATBRI1//MEL1//emb2726//CYCT1;4//anac071//AT1G17930//emb1974//JGL//AT1G63640//ATVLN1//ABCB1//ATEME1A//ATHB-15//ASL18//AGO4//MEE13//SRO1//ABR//BRIZ1 GO:0048608 reproductive structure development BP 0.0298276639877212 AT4G14290//TOZ//AT5G60140//ACLB-2//AGO10//ARP9//ATXR7//CYP78A7//IAA30//emb2474//ATBRI1//MEL1//emb2726//emb1974//JGL//AT1G63640//ABCB1//ATEME1A//ATHB-15//AGO4//MEE13//SRO1//ABR GO:0061458 reproductive system development BP 0.0298276639877212 AT4G14290//TOZ//AT5G60140//ACLB-2//AGO10//ARP9//ATXR7//CYP78A7//IAA30//emb2474//ATBRI1//MEL1//emb2726//emb1974//JGL//AT1G63640//ABCB1//ATEME1A//ATHB-15//AGO4//MEE13//SRO1//ABR GO:0043414 macromolecule methylation BP 0.0298316715884951 KINESIN-12A//AT5G09510//TOZ//ATXR7//emb2474//emb1974//AT1G18850//AT1G63640//ATVLN1//ATEME1A//AGO4 GO:0031326 regulation of cellular biosynthetic proc... BP 0.030313622317996 KINESIN-12A//AXR5//GATA23//KAC2//AT5G65130//AT5G60140//bHLH071//AGO10//AHBP-1B//ATCPL2//IAA30//ATWRKY70//GH3.5//AT4G27240//CYCT1;4//anac071//IAA2//AT3G21810//emb1974//AT1G68810//AT1G63640//ATAUX2-27//ATHB18//ATVLN1//ATEME1A//ATHB-15//AGO4//AtWRKY12 GO:0009314 response to radiation BP 0.0303257946372479 TOZ//GATA23//DDB2//ATGLR3.6//AT3G46930//ATBRI1//MEL1//Hop3//APP//UVH3//AT3G03770//ABCB1//ATEME1A//SRO1//ATGLR2.7//ABR//BAS1 GO:0048856 anatomical structure development BP 0.0304461423653593 LBD18//KINESIN-12A//AXR5//LOI1//AT4G14290//TOZ//GATA23//AT5G60140//AT5G57950//SESA5//ACLB-2//AGO10//ARP9//ATXR7//AT5G16500//CYP78A7//ATCKX6//IAA30//EDA14//ATGSL11//ATWRKY70//BIR6//emb2474//ATBRI1//MEL1//emb2726//CYCT1;4//AT1G17930//emb1974//UNE7//JGL//AT1G63640//ATVLN1//ABCB1//ATEME1A//ATHB-15//ASL18//AGO4//MEE13//SRO1//ABR GO:0007018 microtubule-based movement BP 0.0304463168481246 KAC2//AT3G12020//AT1G63640 GO:0071365 cellular response to auxin stimulus BP 0.0304463168481246 ATCPL2//ABCB1//ABR GO:0009630 gravitropism BP 0.0307313053842903 IAA30//MEL1//TAF2//ABCB1//ABR